Wall clock time and date at job start Tue Mar 31 2020 12:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30841 * 125.90347 * 2 1 4 4 N 1.40077 * 108.20904 * 180.02562 * 3 2 1 5 5 C 1.46506 * 126.03484 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92645 * 0.26143 * 4 3 2 7 7 C 1.35318 * 107.74290 * 359.57821 * 6 4 3 8 8 C 1.50700 * 126.03840 * 180.16409 * 7 6 4 9 9 C 1.50695 * 109.47145 * 265.30936 * 8 7 6 10 10 O 1.21292 * 119.99919 * 359.97438 * 9 8 7 11 11 N 1.34774 * 120.00283 * 179.97438 * 9 8 7 12 12 C 1.46509 * 120.00295 * 179.97438 * 11 9 8 13 13 C 1.50700 * 109.46724 * 90.00099 * 12 11 9 14 14 H 1.08000 * 120.00104 * 0.02562 * 13 12 11 15 15 C 1.37875 * 119.99496 * 180.02562 * 13 12 11 16 16 N 1.31514 * 120.00555 * 359.97438 * 15 13 12 17 17 Si 1.86806 * 119.99844 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47181 * 59.99417 * 17 15 13 19 19 H 1.48492 * 109.47299 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46835 * 299.99972 * 17 15 13 21 21 C 1.46498 * 120.00173 * 359.97438 * 11 9 8 22 22 C 1.50706 * 109.47332 * 89.99612 * 21 11 9 23 23 C 1.34516 * 125.78574 * 90.00276 * 22 21 11 24 24 C 1.41380 * 106.83656 * 180.02562 * 23 22 21 25 25 C 1.34513 * 106.84658 * 0.02562 * 24 23 22 26 26 O 1.34298 * 125.78873 * 269.70034 * 22 21 11 27 27 H 1.08997 * 109.47164 * 89.98038 * 1 2 3 28 28 H 1.09002 * 109.46768 * 209.97863 * 1 2 3 29 29 H 1.08999 * 109.47145 * 329.97571 * 1 2 3 30 30 H 1.08999 * 109.46871 * 90.02616 * 5 4 3 31 31 H 1.08994 * 109.46947 * 210.02323 * 5 4 3 32 32 H 1.08997 * 109.47271 * 330.02840 * 5 4 3 33 33 H 1.08002 * 126.12338 * 179.73269 * 6 4 3 34 34 H 1.09003 * 109.47210 * 25.30474 * 8 7 6 35 35 H 1.09000 * 109.47322 * 145.30308 * 8 7 6 36 36 H 1.08995 * 109.47051 * 210.00235 * 12 11 9 37 37 H 1.08996 * 109.46557 * 330.00389 * 12 11 9 38 38 H 0.96993 * 119.99757 * 180.02562 * 16 15 13 39 39 H 1.08991 * 109.47624 * 210.00186 * 21 11 9 40 40 H 1.09003 * 109.46812 * 330.00391 * 21 11 9 41 41 H 1.08000 * 126.58060 * 359.96418 * 23 22 21 42 42 H 1.08000 * 126.57668 * 179.97438 * 24 23 22 43 43 H 1.07993 * 125.79555 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5008 -0.0013 6 6 3.6142 -0.7154 -0.0068 7 6 2.3271 -1.1330 -0.0006 8 6 1.8599 -2.5658 -0.0007 9 6 1.5860 -3.0047 -1.4160 10 8 1.7532 -2.2301 -2.3343 11 7 1.1551 -4.2579 -1.6616 12 6 0.8883 -4.6844 -3.0375 13 6 2.1426 -5.2688 -3.6344 14 1 3.0478 -5.3180 -3.0474 15 6 2.1344 -5.7407 -4.9299 16 7 1.0320 -5.6813 -5.6445 17 14 3.6890 -6.4657 -5.6696 18 1 4.1213 -7.6360 -4.8641 19 1 3.4187 -6.8980 -7.0642 20 1 4.7629 -5.4400 -5.6681 21 6 0.9536 -5.1937 -0.5526 22 6 -0.4613 -5.0764 -0.0470 23 6 -1.5159 -5.7844 -0.4896 24 6 -2.6384 -5.3563 0.2558 25 6 -2.2027 -4.4119 1.1089 26 8 -0.8819 -4.2514 0.9257 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5142 30 1 5.0836 1.7155 1.0262 31 1 5.6089 0.9983 -0.5158 32 1 4.5560 2.4334 -0.5147 33 1 4.4892 -1.3485 -0.0129 34 1 2.6329 -3.2001 0.4332 35 1 0.9471 -2.6503 0.5891 36 1 0.1005 -5.4377 -3.0381 37 1 0.5704 -3.8257 -3.6288 38 1 1.0263 -6.0136 -6.5557 39 1 1.1325 -6.2115 -0.8989 40 1 1.6482 -4.9567 0.2534 41 1 -1.5071 -6.5350 -1.2661 42 1 -3.6515 -5.7175 0.1583 43 1 -2.8108 -3.8773 1.8235 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361695461.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:59 Heat of formation + Delta-G solvation = 37.484556 kcal Electronic energy + Delta-G solvation = -26770.208600 eV Core-core repulsion = 23011.373989 eV Total energy + Delta-G solvation = -3758.834611 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.36469 -42.21916 -40.40309 -36.80840 -35.12133 -34.78977 -33.78626 -32.92671 -31.45191 -30.60201 -29.67884 -28.23226 -26.68946 -25.86075 -24.46267 -22.54568 -21.81148 -21.57898 -20.71553 -19.80659 -18.77028 -18.16164 -17.74845 -17.65342 -17.02073 -16.63462 -16.31677 -16.16593 -15.99989 -15.34284 -14.99577 -14.51206 -14.45841 -14.20476 -14.15345 -13.90012 -13.85007 -13.67165 -13.48860 -13.29239 -13.16573 -13.01285 -12.96126 -12.92127 -12.64419 -12.56017 -12.46376 -12.17277 -11.72498 -11.43386 -10.75836 -10.61871 -10.60096 -10.11204 -9.58856 -9.30146 -9.22892 -8.18555 -6.32817 0.83388 0.95958 1.39225 1.43294 1.50324 1.67212 1.74151 1.78171 1.88216 2.23291 2.40056 2.65062 3.11812 3.59459 3.85065 3.92566 3.97443 4.12762 4.21783 4.23776 4.33292 4.41543 4.45125 4.45690 4.47993 4.64692 4.67404 4.70911 4.80732 4.96460 5.00016 5.08018 5.12079 5.13067 5.17897 5.28546 5.30587 5.57679 5.68951 5.75004 5.86136 6.10154 6.19268 6.30375 6.73570 6.77787 6.80577 7.33172 7.55119 8.88795 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.008563 B = 0.005350 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3269.116235 B = 5232.229046 C = 7840.622099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.073 3.927 3 N -0.337 5.337 4 N -0.382 5.382 5 C 0.096 3.904 6 C 0.067 3.933 7 C -0.236 4.236 8 C -0.046 4.046 9 C 0.504 3.496 10 O -0.585 6.585 11 N -0.600 5.600 12 C 0.267 3.733 13 C -0.538 4.538 14 H 0.060 0.940 15 C 0.007 3.993 16 N -0.931 5.931 17 Si 0.966 3.034 18 H -0.257 1.257 19 H -0.283 1.283 20 H -0.278 1.278 21 C 0.189 3.811 22 C -0.042 4.042 23 C -0.214 4.214 24 C -0.232 4.232 25 C -0.033 4.033 26 O -0.178 6.178 27 H 0.057 0.943 28 H 0.088 0.912 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.202 0.798 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.021 0.979 37 H -0.010 1.010 38 H 0.265 0.735 39 H 0.113 0.887 40 H 0.122 0.878 41 H 0.136 0.864 42 H 0.164 0.836 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.227 4.844 19.401 20.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.093 4.093 3 N -0.161 5.161 4 N -0.164 5.164 5 C -0.044 4.044 6 C -0.080 4.080 7 C -0.248 4.248 8 C -0.087 4.087 9 C 0.294 3.706 10 O -0.465 6.465 11 N -0.331 5.331 12 C 0.146 3.854 13 C -0.577 4.577 14 H 0.078 0.922 15 C -0.192 4.192 16 N -0.570 5.570 17 Si 0.790 3.210 18 H -0.181 1.181 19 H -0.208 1.208 20 H -0.204 1.204 21 C 0.067 3.933 22 C -0.093 4.093 23 C -0.234 4.234 24 C -0.251 4.251 25 C -0.100 4.100 26 O -0.075 6.075 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.219 0.781 34 H 0.143 0.857 35 H 0.130 0.870 36 H 0.039 0.961 37 H 0.008 0.992 38 H 0.074 0.926 39 H 0.131 0.869 40 H 0.140 0.860 41 H 0.154 0.846 42 H 0.181 0.819 43 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges 1.640 6.786 18.896 20.145 hybrid contribution 0.149 -1.377 -1.433 1.993 sum 1.789 5.409 17.463 18.369 Atomic orbital electron populations 1.20173 0.86147 1.04136 1.02301 1.22494 0.97708 0.90575 0.98501 1.77129 0.87805 1.23462 1.27666 1.48625 1.05679 1.05307 1.56776 1.22162 0.82758 0.94674 1.04782 1.22751 0.99699 0.85308 1.00258 1.19594 0.92732 0.95094 1.17364 1.19955 1.04384 0.92441 0.91901 1.21420 0.76026 0.80890 0.92310 1.90646 1.53406 1.53796 1.48643 1.48273 1.64879 1.12055 1.07873 1.18664 0.95540 0.93251 0.77965 1.21698 0.97399 1.39797 0.98776 0.92151 1.25856 0.99648 0.96352 0.97299 1.70063 1.29057 1.47635 1.10290 0.85493 0.79008 0.78929 0.77526 1.18083 1.20841 1.20393 1.20071 0.88356 0.95746 0.89165 1.23044 0.98240 0.94934 0.93083 1.21882 0.93373 1.04601 1.03541 1.22110 1.00663 1.02070 1.00210 1.24805 0.81078 1.01032 1.03080 1.83987 1.25100 1.52199 1.46170 0.92386 0.89314 0.89580 0.88729 0.87364 0.89592 0.78089 0.85745 0.87014 0.96104 0.99189 0.92596 0.86905 0.86003 0.84569 0.81878 0.74132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.96 10.26 71.24 0.73 -1.23 16 2 C 0.07 2.43 7.22 43.10 0.31 2.74 16 3 N -0.34 -11.37 12.57 -47.38 -0.60 -11.97 16 4 N -0.38 -10.59 4.01 -369.56 -1.48 -12.07 16 5 C 0.10 1.58 11.47 127.77 1.47 3.04 16 6 C 0.07 1.84 11.40 83.54 0.95 2.79 16 7 C -0.24 -7.50 4.59 -20.14 -0.09 -7.59 16 8 C -0.05 -1.37 4.51 29.10 0.13 -1.24 16 9 C 0.50 21.18 7.66 87.66 0.67 21.85 16 10 O -0.59 -31.28 15.61 -3.07 -0.05 -31.33 16 11 N -0.60 -25.18 2.44 -830.49 -2.03 -27.21 16 12 C 0.27 14.40 5.16 85.63 0.44 14.84 16 13 C -0.54 -30.46 9.39 25.60 0.24 -30.22 16 14 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 15 C 0.01 0.41 5.46 84.65 0.46 0.87 16 16 N -0.93 -56.61 13.29 21.45 0.28 -56.33 16 17 Si 0.97 44.44 29.54 68.60 2.03 46.46 16 18 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 19 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 20 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 21 C 0.19 5.83 5.74 85.64 0.49 6.32 16 22 C -0.04 -1.25 6.85 24.84 0.17 -1.08 16 23 C -0.21 -6.53 10.81 22.19 0.24 -6.29 16 24 C -0.23 -5.65 10.91 22.19 0.24 -5.41 16 25 C -0.03 -0.68 12.09 66.97 0.81 0.13 16 26 O -0.18 -4.59 9.55 -2.54 -0.02 -4.62 16 27 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.09 2.19 7.37 -2.39 -0.02 2.17 16 29 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.20 4.00 8.06 -2.91 -0.02 3.98 16 34 H 0.12 2.79 7.40 -2.39 -0.02 2.78 16 35 H 0.11 2.96 6.20 -2.39 -0.01 2.94 16 36 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 37 H -0.01 -0.64 7.42 -2.39 -0.02 -0.66 16 38 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 39 H 0.11 3.47 8.07 -2.39 -0.02 3.45 16 40 H 0.12 2.78 6.44 -2.39 -0.02 2.76 16 41 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 42 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 43 H 0.24 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -84.29 371.89 6.42 -77.88 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: 1.01 Total: 19.64 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 7.27 Total: -0.46 kcal Atomic # 7 Polarization: -103.76 SS G_CDS: -3.82 Total: -107.58 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.07 Total: -35.95 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.46 kcal Total: -84.29 6.42 -77.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361695461.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.360 kcal (2) G-P(sol) polarization free energy of solvation -84.293 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds