Wall clock time and date at job start Tue Mar 31 2020 11:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 110.21973 * 2 1 4 4 N 1.46493 * 109.47346 * 301.93309 * 3 2 1 5 5 C 1.34780 * 120.00054 * 179.97438 * 4 3 2 6 6 O 1.21585 * 119.99949 * 359.97438 * 5 4 3 7 7 N 1.34773 * 119.99893 * 180.02562 * 5 4 3 8 8 C 1.39244 * 119.99891 * 185.28902 * 7 5 4 9 9 C 1.39486 * 119.83134 * 214.67748 * 8 7 5 10 10 C 1.36375 * 120.16603 * 179.97438 * 9 8 7 11 11 C 1.40872 * 119.82957 * 0.02615 * 10 9 8 12 12 C 1.41155 * 120.16393 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00054 * 332.13769 * 12 11 10 14 14 C 1.39888 * 120.00334 * 152.13115 * 12 11 10 15 15 N 1.30879 * 120.00163 * 164.12136 * 14 12 11 16 16 Si 1.86807 * 120.00001 * 344.12601 * 14 12 11 17 17 H 1.48504 * 109.46736 * 95.15483 * 16 14 12 18 18 H 1.48493 * 109.47343 * 215.15620 * 16 14 12 19 19 H 1.48504 * 109.46727 * 335.15976 * 16 14 12 20 20 C 1.40863 * 119.67196 * 359.97438 * 11 10 9 21 21 C 1.36376 * 119.82803 * 0.02562 * 20 11 10 22 22 C 1.54486 * 110.24586 * 121.93459 * 2 1 3 23 23 C 1.54635 * 101.76371 * 93.66897 * 22 2 1 24 24 C 1.51279 * 104.19589 * 24.79848 * 23 22 2 25 25 O 1.21279 * 124.93998 * 163.74514 * 24 23 22 26 26 N 1.34423 * 110.11705 * 343.74704 * 24 23 22 27 27 H 1.09003 * 109.46981 * 59.29775 * 1 2 3 28 28 H 1.08996 * 109.47027 * 179.29502 * 1 2 3 29 29 H 1.08994 * 109.47192 * 299.29721 * 1 2 3 30 30 H 1.08996 * 109.47517 * 181.92801 * 3 2 1 31 31 H 1.09001 * 109.46710 * 61.93092 * 3 2 1 32 32 H 0.97003 * 120.00294 * 359.97438 * 4 3 2 33 33 H 0.96998 * 120.00528 * 5.28222 * 7 5 4 34 34 H 1.07994 * 119.91778 * 0.02670 * 9 8 7 35 35 H 1.08000 * 120.08327 * 180.30193 * 10 9 8 36 36 H 0.97001 * 119.99623 * 180.02562 * 15 14 12 37 37 H 1.08002 * 120.08536 * 180.02562 * 20 11 10 38 38 H 1.08005 * 119.90879 * 179.97438 * 21 20 11 39 39 H 1.09000 * 110.96764 * 211.78794 * 22 2 1 40 40 H 1.08999 * 110.96540 * 335.51316 * 22 2 1 41 41 H 1.08992 * 110.48157 * 143.47960 * 23 22 2 42 42 H 1.09002 * 110.48272 * 265.98933 * 23 22 2 43 43 H 0.96998 * 124.34699 * 179.56728 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0588 1.4357 0.0000 4 7 1.5421 2.1464 -1.1721 5 6 1.8774 3.4350 -1.3808 6 8 2.6084 4.0077 -0.5960 7 7 1.4016 4.0890 -2.4589 8 6 1.8341 5.3835 -2.7348 9 6 0.9507 6.3052 -3.2968 10 6 1.3669 7.5750 -3.5694 11 6 2.6928 7.9547 -3.2823 12 6 3.1312 9.2669 -3.5619 13 1 2.6708 9.8317 -4.3591 14 6 4.1618 9.8361 -2.8065 15 7 4.7798 10.9042 -3.2425 16 14 4.6563 9.0714 -1.1754 17 1 5.8030 8.1519 -1.3873 18 1 5.0498 10.1428 -0.2255 19 1 3.5090 8.3115 -0.6171 20 6 3.5789 7.0183 -2.7147 21 6 3.1483 5.7521 -2.4478 22 6 2.0646 -0.7667 1.2300 23 6 2.2646 -2.1875 0.6535 24 6 2.4538 -1.9625 -0.8305 25 8 2.9124 -2.7767 -1.6035 26 7 2.0396 -0.7289 -1.1675 27 1 -0.3633 0.5247 -0.8836 28 1 -0.3633 -1.0276 -0.0126 29 1 -0.3633 0.5028 0.8962 30 1 3.1481 1.4217 -0.0346 31 1 1.7306 1.9437 0.9068 32 1 0.9585 1.6896 -1.7981 33 1 0.7580 3.6580 -3.0427 34 1 -0.0655 6.0128 -3.5160 35 1 0.6805 8.2890 -4.0000 36 1 5.4948 11.2986 -2.7188 37 1 4.5967 7.3023 -2.4915 38 1 3.8267 5.0329 -2.0130 39 1 3.0113 -0.3469 1.5701 40 1 1.3305 -0.7717 2.0358 41 1 3.1507 -2.6529 1.0848 42 1 1.3835 -2.8019 0.8390 43 1 2.0736 -0.3668 -2.0668 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365479706.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:22 Heat of formation + Delta-G solvation = -41.870730 kcal Electronic energy + Delta-G solvation = -25765.357583 eV Core-core repulsion = 22003.081869 eV Total energy + Delta-G solvation = -3762.275715 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.17481 -39.95912 -37.98231 -37.35046 -34.69810 -34.31560 -33.09144 -31.83635 -30.94970 -29.93131 -29.43269 -27.28413 -25.11278 -24.07049 -21.86140 -21.50933 -21.28592 -20.58609 -20.06282 -18.38343 -17.60648 -17.29121 -16.81092 -16.58496 -15.64082 -15.59598 -15.05421 -14.91618 -14.45551 -14.30089 -14.09704 -13.80753 -13.53637 -13.34005 -13.26398 -12.98439 -12.77766 -12.54879 -12.52069 -12.37749 -12.24349 -11.89567 -11.51073 -11.40817 -10.90488 -10.77356 -10.57959 -10.25010 -10.23566 -9.77425 -9.71327 -9.59492 -9.17468 -9.10945 -9.02401 -7.77877 -7.16838 -6.94490 -4.42404 2.23023 2.44986 2.71696 2.75312 2.94198 3.16067 3.26590 3.39168 3.52934 3.80611 3.89081 4.03094 4.16201 4.37323 4.43256 4.52673 4.54608 4.80387 5.05616 5.17225 5.21230 5.24345 5.40258 5.43947 5.46995 5.49295 5.67065 5.90821 6.12041 6.30734 6.41429 6.42318 6.58132 6.62959 6.75365 6.87849 6.95466 7.16784 7.43072 7.59127 7.66052 7.86716 7.87555 8.09066 8.27039 8.34320 8.62688 8.79649 8.91241 10.07251 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025703 B = 0.002576 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.121461 B =10868.294233 C =11246.610291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 C 0.140 3.860 4 N -0.753 5.753 5 C 0.695 3.305 6 O -0.575 6.575 7 N -0.666 5.666 8 C 0.009 3.991 9 C -0.094 4.094 10 C -0.199 4.199 11 C 0.086 3.914 12 C -0.440 4.440 13 H 0.091 0.909 14 C 0.082 3.918 15 N -0.809 5.809 16 Si 0.913 3.087 17 H -0.271 1.271 18 H -0.293 1.293 19 H -0.240 1.240 20 C -0.230 4.230 21 C -0.059 4.059 22 C -0.121 4.121 23 C -0.155 4.155 24 C 0.521 3.479 25 O -0.535 6.535 26 N -0.722 5.722 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.391 0.609 33 H 0.392 0.608 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.286 0.714 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.847 -21.674 8.632 24.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.057 3.943 3 C 0.014 3.986 4 N -0.411 5.411 5 C 0.395 3.605 6 O -0.451 6.451 7 N -0.312 5.312 8 C -0.084 4.084 9 C -0.114 4.114 10 C -0.219 4.219 11 C 0.083 3.917 12 C -0.468 4.468 13 H 0.109 0.891 14 C -0.137 4.137 15 N -0.433 5.433 16 Si 0.740 3.260 17 H -0.198 1.198 18 H -0.221 1.221 19 H -0.163 1.163 20 C -0.249 4.249 21 C -0.079 4.079 22 C -0.159 4.159 23 C -0.195 4.195 24 C 0.307 3.693 25 O -0.412 6.412 26 N -0.378 5.378 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.225 0.775 33 H 0.225 0.775 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.123 0.877 39 H 0.109 0.891 40 H 0.115 0.885 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -7.731 -21.393 9.065 24.487 hybrid contribution -0.291 -0.353 -0.320 0.558 sum -8.022 -21.746 8.745 24.773 Atomic orbital electron populations 1.22190 0.93069 1.02845 1.03427 1.21352 0.94819 0.91672 0.86430 1.21470 0.99340 0.88687 0.89085 1.45079 1.55623 1.11539 1.28903 1.15978 0.81523 0.80930 0.82024 1.90951 1.40800 1.66691 1.46701 1.42054 1.47241 1.15376 1.26547 1.16849 0.93879 0.83678 1.13984 1.20138 0.96463 0.93254 1.01592 1.20549 0.95752 0.95383 1.10166 1.17773 0.90932 0.93236 0.89745 1.19479 1.13940 0.97930 1.15465 0.89119 1.26197 0.93285 0.94169 1.00022 1.69702 1.17494 1.18795 1.37294 0.86296 0.80841 0.77990 0.80825 1.19783 1.22116 1.16315 1.20645 0.99038 0.93952 1.11310 1.20293 0.93398 0.96429 0.97827 1.22670 1.03340 0.93672 0.96243 1.22353 1.05328 0.98565 0.93296 1.20888 0.75998 0.81387 0.91036 1.90777 1.45173 1.47625 1.57600 1.46407 1.64219 1.15809 1.11322 0.91828 0.91675 0.90473 0.90789 0.89977 0.77530 0.77503 0.88634 0.87803 0.90411 0.88155 0.87660 0.89139 0.88458 0.87796 0.87674 0.75113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.69 8.61 37.16 0.32 -0.37 16 2 C 0.14 0.81 0.84 -130.90 -0.11 0.70 16 3 C 0.14 1.19 4.76 -4.05 -0.02 1.17 16 4 N -0.75 -7.52 5.14 -65.23 -0.33 -7.85 16 5 C 0.69 10.97 8.28 -86.92 -0.72 10.25 16 6 O -0.58 -11.89 14.09 5.29 0.07 -11.82 16 7 N -0.67 -10.45 5.31 -14.10 -0.07 -10.52 16 8 C 0.01 0.18 6.26 -83.57 -0.52 -0.34 16 9 C -0.09 -1.89 9.90 -39.79 -0.39 -2.29 16 10 C -0.20 -4.52 9.74 -39.26 -0.38 -4.90 16 11 C 0.09 2.21 5.18 -106.80 -0.55 1.65 16 12 C -0.44 -11.93 9.58 -37.86 -0.36 -12.29 16 13 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 14 C 0.08 2.19 5.44 -17.34 -0.09 2.10 16 15 N -0.81 -21.77 13.93 55.54 0.77 -20.99 16 16 Si 0.91 21.80 24.39 -169.99 -4.15 17.65 16 17 H -0.27 -6.37 6.71 56.52 0.38 -5.99 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.24 -6.02 6.65 56.52 0.38 -5.64 16 20 C -0.23 -5.77 6.97 -39.26 -0.27 -6.04 16 21 C -0.06 -1.38 8.57 -39.79 -0.34 -1.72 16 22 C -0.12 -0.50 6.21 -25.09 -0.16 -0.65 16 23 C -0.16 -0.82 6.86 -26.74 -0.18 -1.00 16 24 C 0.52 4.82 8.43 -10.86 -0.09 4.73 16 25 O -0.54 -7.49 18.03 5.56 0.10 -7.39 16 26 N -0.72 -5.24 5.43 -46.61 -0.25 -5.49 16 27 H 0.06 0.29 6.79 -51.93 -0.35 -0.06 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.39 2.75 7.05 -40.82 -0.29 2.46 16 33 H 0.39 4.54 8.83 -40.82 -0.36 4.18 16 34 H 0.10 1.59 8.06 -52.49 -0.42 1.16 16 35 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 36 H 0.29 6.98 8.30 -40.82 -0.34 6.64 16 37 H 0.10 2.55 4.27 -52.49 -0.22 2.32 16 38 H 0.11 2.46 6.49 -52.48 -0.34 2.12 16 39 H 0.09 0.38 7.91 -51.93 -0.41 -0.03 16 40 H 0.10 0.22 7.89 -51.93 -0.41 -0.19 16 41 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.41 2.98 8.72 -40.82 -0.36 2.63 16 LS Contribution 351.68 15.07 5.30 5.30 Total: -1.00 -34.36 351.68 -8.18 -42.54 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -5.73 Total: 7.59 kcal Atomic # 6 Polarization: -5.13 SS G_CDS: -3.89 Total: -9.02 kcal Atomic # 7 Polarization: -44.97 SS G_CDS: 0.11 Total: -44.86 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: 0.17 Total: -19.20 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.15 Total: 17.65 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.36 -8.18 -42.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365479706.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.667 kcal (2) G-P(sol) polarization free energy of solvation -34.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds