Wall clock time and date at job start Tue Mar 31 2020 11:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 110.21797 * 2 1 4 4 N 1.46502 * 109.47013 * 301.93258 * 3 2 1 5 5 C 1.34773 * 119.99990 * 179.97438 * 4 3 2 6 6 O 1.21595 * 119.99646 * 359.97438 * 5 4 3 7 7 N 1.34768 * 120.00404 * 180.02562 * 5 4 3 8 8 C 1.39952 * 120.00516 * 174.84767 * 7 5 4 9 9 C 1.39290 * 119.95017 * 145.77473 * 8 7 5 10 10 C 1.38490 * 120.43109 * 179.97438 * 9 8 7 11 11 C 1.37682 * 120.31851 * 0.02562 * 10 9 8 12 12 C 1.40737 * 119.88649 * 359.97438 * 11 10 9 13 13 C 1.41412 * 120.21126 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99942 * 205.17021 * 13 12 11 15 15 C 1.39933 * 119.99885 * 25.16153 * 13 12 11 16 16 N 1.30824 * 119.99979 * 16.79304 * 15 13 12 17 17 Si 1.86799 * 120.00009 * 196.78286 * 15 13 12 18 18 H 1.48507 * 109.46969 * 94.96845 * 17 15 13 19 19 H 1.48497 * 109.47443 * 214.96724 * 17 15 13 20 20 H 1.48506 * 109.47248 * 334.97446 * 17 15 13 21 21 C 1.38238 * 119.94774 * 325.49778 * 8 7 5 22 22 C 1.54478 * 110.24973 * 121.93303 * 2 1 3 23 23 C 1.54627 * 101.76567 * 93.66584 * 22 2 1 24 24 C 1.51282 * 104.19443 * 24.80410 * 23 22 2 25 25 O 1.21280 * 124.94192 * 163.74531 * 24 23 22 26 26 N 1.34414 * 110.11359 * 343.74235 * 24 23 22 27 27 H 1.08996 * 109.47885 * 59.29586 * 1 2 3 28 28 H 1.09005 * 109.47384 * 179.30303 * 1 2 3 29 29 H 1.09000 * 109.47163 * 299.29522 * 1 2 3 30 30 H 1.09001 * 109.47212 * 181.92951 * 3 2 1 31 31 H 1.09002 * 109.46917 * 61.93455 * 3 2 1 32 32 H 0.96993 * 119.99877 * 0.02562 * 4 3 2 33 33 H 0.97004 * 119.99907 * 354.57422 * 7 5 4 34 34 H 1.07998 * 119.78083 * 359.95693 * 9 8 7 35 35 H 1.07997 * 119.84271 * 179.97438 * 10 9 8 36 36 H 1.08006 * 120.05609 * 179.97438 * 11 10 9 37 37 H 0.96994 * 120.00134 * 179.97438 * 16 15 13 38 38 H 1.08006 * 120.15704 * 0.02562 * 21 8 7 39 39 H 1.09001 * 110.97031 * 211.78944 * 22 2 1 40 40 H 1.09002 * 110.96578 * 335.51798 * 22 2 1 41 41 H 1.09009 * 110.48813 * 143.47779 * 23 22 2 42 42 H 1.09003 * 110.49198 * 265.98663 * 23 22 2 43 43 H 0.97001 * 124.34632 * 179.57486 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4357 0.0000 4 7 1.5419 2.1464 -1.1722 5 6 1.8772 3.4350 -1.3810 6 8 2.6082 4.0078 -0.5961 7 7 1.4014 4.0890 -2.4590 8 6 1.6605 5.4549 -2.6196 9 6 1.8440 5.9826 -3.8955 10 6 2.1004 7.3329 -4.0660 11 6 2.1771 8.1689 -2.9748 12 6 1.9938 7.6500 -1.6795 13 6 2.0706 8.5026 -0.5539 14 1 2.3361 8.0990 0.4121 15 6 1.8028 9.8691 -0.6917 16 7 1.1735 10.3088 -1.7510 17 14 2.3436 11.0655 0.6370 18 1 3.6603 11.6478 0.2727 19 1 1.3396 12.1524 0.7630 20 1 2.4611 10.3475 1.9317 21 6 1.7281 6.2794 -1.5120 22 6 2.0646 -0.7666 1.2300 23 6 2.2646 -2.1874 0.6535 24 6 2.4538 -1.9624 -0.8304 25 8 2.9124 -2.7766 -1.6035 26 7 2.0396 -0.7289 -1.1675 27 1 -0.3635 0.5247 -0.8835 28 1 -0.3634 -1.0276 -0.0125 29 1 -0.3633 0.5028 0.8962 30 1 3.1481 1.4217 -0.0346 31 1 1.7305 1.9437 0.9068 32 1 0.9579 1.6898 -1.7977 33 1 0.8827 3.6121 -3.1257 34 1 1.7864 5.3345 -4.7574 35 1 2.2416 7.7318 -5.0596 36 1 2.3777 9.2212 -3.1126 37 1 0.9875 11.2559 -1.8464 38 1 1.5818 5.8719 -0.5225 39 1 3.0113 -0.3467 1.5701 40 1 1.3305 -0.7717 2.0357 41 1 3.1509 -2.6529 1.0848 42 1 1.3836 -2.8019 0.8391 43 1 2.0734 -0.3669 -2.0667 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365501184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:27 Heat of formation + Delta-G solvation = -45.111319 kcal Electronic energy + Delta-G solvation = -25721.651092 eV Core-core repulsion = 21959.234855 eV Total energy + Delta-G solvation = -3762.416237 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.12100 -39.85290 -37.78590 -37.11645 -34.58683 -34.25236 -33.00704 -31.78726 -30.82708 -29.80145 -28.25608 -26.89092 -25.28275 -24.43800 -21.77542 -21.30024 -20.87716 -20.53894 -20.04146 -18.26305 -17.78235 -17.02161 -16.54810 -15.99949 -15.57079 -15.25346 -15.01982 -14.70819 -14.50532 -14.35528 -14.21193 -13.86539 -13.37122 -13.20541 -13.05046 -12.92426 -12.85651 -12.53229 -12.31739 -12.13457 -11.64079 -11.43265 -11.35585 -11.18533 -11.12761 -10.90856 -10.44631 -10.22839 -10.19289 -9.70843 -9.54698 -9.51339 -9.14888 -9.02922 -9.00185 -7.42980 -6.88613 -6.69093 -4.31881 2.27184 2.69099 2.80036 2.91108 3.03950 3.10543 3.15710 3.22980 3.67959 3.86179 3.94651 3.97808 4.22172 4.43804 4.47765 4.59824 4.67105 4.85846 5.11994 5.23988 5.27675 5.31308 5.46341 5.53348 5.56576 5.72828 5.74848 6.24450 6.36649 6.41146 6.46667 6.66559 6.72409 6.78117 7.05806 7.10296 7.25019 7.33427 7.68934 7.81855 7.90932 8.00822 8.12581 8.25301 8.40350 8.68142 8.89594 8.98386 9.03104 10.23570 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022755 B = 0.002552 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.192902 B =10968.842077 C =11787.506332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.144 3.856 3 C 0.139 3.861 4 N -0.753 5.753 5 C 0.699 3.301 6 O -0.563 6.563 7 N -0.680 5.680 8 C 0.168 3.832 9 C -0.263 4.263 10 C -0.092 4.092 11 C -0.173 4.173 12 C 0.120 3.880 13 C -0.458 4.458 14 H 0.078 0.922 15 C 0.075 3.925 16 N -0.796 5.796 17 Si 0.908 3.092 18 H -0.269 1.269 19 H -0.278 1.278 20 H -0.262 1.262 21 C -0.209 4.209 22 C -0.121 4.121 23 C -0.155 4.155 24 C 0.521 3.479 25 O -0.536 6.536 26 N -0.721 5.721 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.390 0.610 33 H 0.393 0.607 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.279 0.721 38 H 0.106 0.894 39 H 0.090 0.910 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.386 -18.494 4.326 19.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.057 3.943 3 C 0.014 3.986 4 N -0.411 5.411 5 C 0.399 3.601 6 O -0.438 6.438 7 N -0.326 5.326 8 C 0.076 3.924 9 C -0.285 4.285 10 C -0.111 4.111 11 C -0.193 4.193 12 C 0.117 3.883 13 C -0.488 4.488 14 H 0.096 0.904 15 C -0.142 4.142 16 N -0.422 5.422 17 Si 0.733 3.267 18 H -0.194 1.194 19 H -0.204 1.204 20 H -0.186 1.186 21 C -0.231 4.231 22 C -0.159 4.159 23 C -0.195 4.195 24 C 0.307 3.693 25 O -0.413 6.413 26 N -0.377 5.377 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.224 0.776 33 H 0.227 0.773 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.137 0.863 37 H 0.090 0.910 38 H 0.124 0.876 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -2.569 -18.243 4.716 19.017 hybrid contribution -0.449 0.363 -0.595 0.829 sum -3.018 -17.880 4.121 18.595 Atomic orbital electron populations 1.22194 0.93033 1.02807 1.03539 1.21358 0.94850 0.91682 0.86378 1.21484 0.99328 0.88657 0.89135 1.45104 1.55409 1.11761 1.28859 1.15934 0.80837 0.80776 0.82554 1.90995 1.39586 1.66530 1.46713 1.42572 1.56584 1.09618 1.23873 1.17217 1.01235 0.79439 0.94524 1.20008 1.19050 0.95837 0.93585 1.20446 1.00469 0.92849 0.97326 1.21346 1.06328 0.99624 0.91994 1.17491 0.87175 0.90536 0.93107 1.19593 1.41210 0.91816 0.96141 0.90366 1.25899 0.92475 0.99313 0.96489 1.69827 1.28523 1.16371 1.27446 0.86299 0.79214 0.79580 0.81622 1.19366 1.20360 1.18554 1.20981 1.11983 0.93750 0.96341 1.22669 1.03373 0.93616 0.96260 1.22354 1.05303 0.98600 0.93280 1.20889 0.75980 0.81379 0.91047 1.90772 1.45273 1.47646 1.57619 1.46407 1.64167 1.15809 1.11332 0.91800 0.91709 0.90395 0.90763 0.89838 0.77562 0.77341 0.89407 0.89069 0.86337 0.90996 0.87562 0.89109 0.88429 0.87814 0.87686 0.75153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 8.61 37.16 0.32 -0.50 16 2 C 0.14 0.90 0.84 -130.90 -0.11 0.79 16 3 C 0.14 1.30 4.76 -4.04 -0.02 1.28 16 4 N -0.75 -8.26 5.14 -65.22 -0.33 -8.60 16 5 C 0.70 11.93 8.29 -86.93 -0.72 11.21 16 6 O -0.56 -12.42 14.09 5.28 0.07 -12.35 16 7 N -0.68 -11.74 5.34 -14.27 -0.08 -11.82 16 8 C 0.17 3.78 6.25 -83.76 -0.52 3.25 16 9 C -0.26 -5.78 9.97 -39.10 -0.39 -6.17 16 10 C -0.09 -2.15 10.02 -39.69 -0.40 -2.55 16 11 C -0.17 -4.56 8.69 -38.84 -0.34 -4.89 16 12 C 0.12 3.30 5.57 -106.85 -0.59 2.71 16 13 C -0.46 -12.57 9.05 -37.74 -0.34 -12.91 16 14 H 0.08 2.12 7.90 -52.49 -0.41 1.71 16 15 C 0.08 1.93 5.16 -17.35 -0.09 1.84 16 16 N -0.80 -20.73 10.94 55.55 0.61 -20.12 16 17 Si 0.91 19.08 29.59 -169.99 -5.03 14.05 16 18 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 21 C -0.21 -5.40 8.39 -38.69 -0.32 -5.72 16 22 C -0.12 -0.57 6.21 -25.10 -0.16 -0.72 16 23 C -0.16 -0.88 6.86 -26.74 -0.18 -1.07 16 24 C 0.52 5.01 8.43 -10.86 -0.09 4.92 16 25 O -0.54 -7.64 18.03 5.56 0.10 -7.54 16 26 N -0.72 -5.57 5.43 -46.62 -0.25 -5.82 16 27 H 0.06 0.35 6.79 -51.93 -0.35 0.00 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.39 3.12 7.05 -40.82 -0.29 2.83 16 33 H 0.39 5.15 8.84 -40.82 -0.36 4.79 16 34 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 35 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 36 H 0.12 3.20 6.17 -52.48 -0.32 2.88 16 37 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 38 H 0.11 2.83 6.48 -52.48 -0.34 2.49 16 39 H 0.09 0.43 7.91 -51.93 -0.41 0.02 16 40 H 0.10 0.28 7.89 -51.93 -0.41 -0.13 16 41 H 0.10 0.54 8.14 -51.92 -0.42 0.11 16 42 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.41 3.14 8.72 -40.82 -0.36 2.79 16 LS Contribution 357.97 15.07 5.39 5.39 Total: -1.00 -34.53 357.97 -9.25 -43.78 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -5.77 Total: 11.57 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -3.96 Total: -8.53 kcal Atomic # 7 Polarization: -46.30 SS G_CDS: -0.06 Total: -46.36 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.17 Total: -19.89 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -5.03 Total: 14.05 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.53 -9.25 -43.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365501184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.335 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds