Wall clock time and date at job start Tue Mar 31 2020 11:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 110.21797 * 2 1 4 4 N 1.46502 * 109.47013 * 301.93258 * 3 2 1 5 5 C 1.34773 * 119.99990 * 179.97438 * 4 3 2 6 6 O 1.21595 * 119.99646 * 359.97438 * 5 4 3 7 7 N 1.34768 * 120.00404 * 180.02562 * 5 4 3 8 8 C 1.39952 * 120.00516 * 174.84767 * 7 5 4 9 9 C 1.39290 * 119.95017 * 145.77473 * 8 7 5 10 10 C 1.38490 * 120.43109 * 179.97438 * 9 8 7 11 11 C 1.37682 * 120.31851 * 0.02562 * 10 9 8 12 12 C 1.40737 * 119.88649 * 359.97438 * 11 10 9 13 13 C 1.41412 * 120.21126 * 180.02562 * 12 11 10 14 14 H 1.08002 * 119.99942 * 205.17021 * 13 12 11 15 15 C 1.39933 * 119.99885 * 25.16153 * 13 12 11 16 16 N 1.30824 * 119.99979 * 16.79304 * 15 13 12 17 17 Si 1.86799 * 120.00009 * 196.78286 * 15 13 12 18 18 H 1.48507 * 109.46969 * 94.96845 * 17 15 13 19 19 H 1.48497 * 109.47443 * 214.96724 * 17 15 13 20 20 H 1.48506 * 109.47248 * 334.97446 * 17 15 13 21 21 C 1.38238 * 119.94774 * 325.49778 * 8 7 5 22 22 C 1.54478 * 110.24973 * 121.93303 * 2 1 3 23 23 C 1.54627 * 101.76567 * 93.66584 * 22 2 1 24 24 C 1.51282 * 104.19443 * 24.80410 * 23 22 2 25 25 O 1.21280 * 124.94192 * 163.74531 * 24 23 22 26 26 N 1.34414 * 110.11359 * 343.74235 * 24 23 22 27 27 H 1.08996 * 109.47885 * 59.29586 * 1 2 3 28 28 H 1.09005 * 109.47384 * 179.30303 * 1 2 3 29 29 H 1.09000 * 109.47163 * 299.29522 * 1 2 3 30 30 H 1.09001 * 109.47212 * 181.92951 * 3 2 1 31 31 H 1.09002 * 109.46917 * 61.93455 * 3 2 1 32 32 H 0.96993 * 119.99877 * 0.02562 * 4 3 2 33 33 H 0.97004 * 119.99907 * 354.57422 * 7 5 4 34 34 H 1.07998 * 119.78083 * 359.95693 * 9 8 7 35 35 H 1.07997 * 119.84271 * 179.97438 * 10 9 8 36 36 H 1.08006 * 120.05609 * 179.97438 * 11 10 9 37 37 H 0.96994 * 120.00134 * 179.97438 * 16 15 13 38 38 H 1.08006 * 120.15704 * 0.02562 * 21 8 7 39 39 H 1.09001 * 110.97031 * 211.78944 * 22 2 1 40 40 H 1.09002 * 110.96578 * 335.51798 * 22 2 1 41 41 H 1.09009 * 110.48813 * 143.47779 * 23 22 2 42 42 H 1.09003 * 110.49198 * 265.98663 * 23 22 2 43 43 H 0.97001 * 124.34632 * 179.57486 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0587 1.4357 0.0000 4 7 1.5419 2.1464 -1.1722 5 6 1.8772 3.4350 -1.3810 6 8 2.6082 4.0078 -0.5961 7 7 1.4014 4.0890 -2.4590 8 6 1.6605 5.4549 -2.6196 9 6 1.8440 5.9826 -3.8955 10 6 2.1004 7.3329 -4.0660 11 6 2.1771 8.1689 -2.9748 12 6 1.9938 7.6500 -1.6795 13 6 2.0706 8.5026 -0.5539 14 1 2.3361 8.0990 0.4121 15 6 1.8028 9.8691 -0.6917 16 7 1.1735 10.3088 -1.7510 17 14 2.3436 11.0655 0.6370 18 1 3.6603 11.6478 0.2727 19 1 1.3396 12.1524 0.7630 20 1 2.4611 10.3475 1.9317 21 6 1.7281 6.2794 -1.5120 22 6 2.0646 -0.7666 1.2300 23 6 2.2646 -2.1874 0.6535 24 6 2.4538 -1.9624 -0.8304 25 8 2.9124 -2.7766 -1.6035 26 7 2.0396 -0.7289 -1.1675 27 1 -0.3635 0.5247 -0.8835 28 1 -0.3634 -1.0276 -0.0125 29 1 -0.3633 0.5028 0.8962 30 1 3.1481 1.4217 -0.0346 31 1 1.7305 1.9437 0.9068 32 1 0.9579 1.6898 -1.7977 33 1 0.8827 3.6121 -3.1257 34 1 1.7864 5.3345 -4.7574 35 1 2.2416 7.7318 -5.0596 36 1 2.3777 9.2212 -3.1126 37 1 0.9875 11.2559 -1.8464 38 1 1.5818 5.8719 -0.5225 39 1 3.0113 -0.3467 1.5701 40 1 1.3305 -0.7717 2.0357 41 1 3.1509 -2.6529 1.0848 42 1 1.3836 -2.8019 0.8391 43 1 2.0734 -0.3669 -2.0667 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365501184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:26 Heat of formation + Delta-G solvation = -70.778371 kcal Electronic energy + Delta-G solvation = -25722.764099 eV Core-core repulsion = 21959.234855 eV Total energy + Delta-G solvation = -3763.529244 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.89680 -41.18413 -39.21589 -38.30600 -36.21507 -35.48623 -34.76548 -32.35637 -31.73113 -31.59627 -29.77782 -27.74542 -27.20766 -25.17433 -23.28635 -22.70307 -22.06238 -21.50622 -21.16528 -19.59828 -19.45422 -18.01327 -17.48418 -17.12885 -17.08189 -16.55210 -16.37462 -16.12533 -15.92843 -15.42875 -15.12626 -14.92477 -14.71956 -14.59447 -14.10468 -13.89215 -13.64849 -13.51953 -13.37070 -13.28740 -12.98115 -12.90003 -12.79592 -12.75996 -12.16861 -12.01045 -11.97477 -11.81151 -11.53748 -11.24253 -10.98219 -10.97498 -10.78455 -10.24786 -10.16432 -9.37576 -8.71266 -8.57035 -6.35104 0.93910 1.04593 1.37435 1.50055 1.51318 1.54456 1.65569 2.17678 2.22258 2.31716 2.76155 3.20979 3.35826 3.41028 3.73454 3.76339 3.90121 4.10168 4.38962 4.48449 4.56930 4.65054 4.70825 4.73136 4.85206 4.94251 5.06278 5.09797 5.10845 5.13054 5.14174 5.20385 5.31571 5.33829 5.38165 5.71866 5.80273 5.84167 5.99038 6.06599 6.12935 6.18153 6.38110 6.70832 6.96299 7.02482 7.07443 7.19610 7.59076 8.34956 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022755 B = 0.002552 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.192902 B =10968.842077 C =11787.506332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.154 3.846 3 C 0.137 3.863 4 N -0.725 5.725 5 C 0.695 3.305 6 O -0.616 6.616 7 N -0.670 5.670 8 C 0.177 3.823 9 C -0.253 4.253 10 C -0.091 4.091 11 C -0.201 4.201 12 C 0.089 3.911 13 C -0.501 4.501 14 H 0.063 0.937 15 C 0.037 3.963 16 N -0.823 5.823 17 Si 0.981 3.019 18 H -0.261 1.261 19 H -0.262 1.262 20 H -0.264 1.264 21 C -0.234 4.234 22 C -0.115 4.115 23 C -0.147 4.147 24 C 0.511 3.489 25 O -0.591 6.591 26 N -0.717 5.717 27 H 0.061 0.939 28 H 0.076 0.924 29 H 0.087 0.913 30 H 0.059 0.941 31 H 0.083 0.917 32 H 0.409 0.591 33 H 0.417 0.583 34 H 0.130 0.870 35 H 0.122 0.878 36 H 0.103 0.897 37 H 0.289 0.711 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.126 0.874 41 H 0.110 0.890 42 H 0.127 0.873 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.387 -19.759 4.370 20.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.067 3.933 3 C 0.012 3.988 4 N -0.384 5.384 5 C 0.396 3.604 6 O -0.495 6.495 7 N -0.318 5.318 8 C 0.083 3.917 9 C -0.275 4.275 10 C -0.110 4.110 11 C -0.221 4.221 12 C 0.087 3.913 13 C -0.531 4.531 14 H 0.081 0.919 15 C -0.177 4.177 16 N -0.449 5.449 17 Si 0.802 3.198 18 H -0.186 1.186 19 H -0.186 1.186 20 H -0.188 1.188 21 C -0.256 4.256 22 C -0.153 4.153 23 C -0.186 4.186 24 C 0.300 3.700 25 O -0.472 6.472 26 N -0.371 5.371 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.106 0.894 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.247 0.753 33 H 0.254 0.746 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.144 0.856 41 H 0.129 0.871 42 H 0.145 0.855 43 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -3.631 -19.568 4.735 20.457 hybrid contribution -0.164 0.618 -0.696 0.945 sum -3.795 -18.950 4.039 19.744 Atomic orbital electron populations 1.22207 0.91505 1.03754 1.03963 1.21393 0.95750 0.89458 0.86674 1.21641 0.98606 0.90321 0.88223 1.44864 1.54446 1.09603 1.29445 1.16157 0.80341 0.82162 0.81756 1.90975 1.41965 1.68201 1.48342 1.42324 1.56825 1.07889 1.24809 1.17257 0.99170 0.81394 0.93863 1.20433 1.16652 0.95821 0.94562 1.20815 0.98985 0.93344 0.97838 1.21305 1.08633 0.99505 0.92622 1.17832 0.88062 0.91545 0.93908 1.19741 1.43951 0.93563 0.95822 0.91875 1.26693 0.91801 1.00240 0.99001 1.69858 1.28716 1.17297 1.28985 0.85216 0.79187 0.77171 0.78240 1.18587 1.18642 1.18775 1.20937 1.14036 0.93946 0.96675 1.22759 1.04229 0.92338 0.96016 1.22392 1.06609 0.99528 0.90109 1.21581 0.74887 0.81097 0.92472 1.90741 1.47785 1.49305 1.59371 1.46504 1.63321 1.15529 1.11746 0.92019 0.90499 0.89413 0.92294 0.89897 0.75339 0.74557 0.85209 0.86035 0.87873 0.90053 0.89609 0.89131 0.85604 0.87139 0.85536 0.75373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.13 8.61 71.98 0.62 -0.51 16 2 C 0.15 1.57 0.84 4.05 0.00 1.57 16 3 C 0.14 2.38 4.76 86.38 0.41 2.79 16 4 N -0.73 -14.82 5.14 -478.53 -2.46 -17.28 16 5 C 0.70 23.35 8.29 179.06 1.48 24.83 16 6 O -0.62 -27.83 14.09 -4.01 -0.06 -27.89 16 7 N -0.67 -22.13 5.34 -317.33 -1.70 -23.82 16 8 C 0.18 7.87 6.25 38.10 0.24 8.10 16 9 C -0.25 -10.57 9.97 22.58 0.23 -10.34 16 10 C -0.09 -4.17 10.02 22.20 0.22 -3.94 16 11 C -0.20 -10.84 8.69 22.75 0.20 -10.64 16 12 C 0.09 5.14 5.57 -21.31 -0.12 5.02 16 13 C -0.50 -29.03 9.05 23.46 0.21 -28.82 16 14 H 0.06 3.68 7.90 -2.91 -0.02 3.65 16 15 C 0.04 1.97 5.16 85.25 0.44 2.41 16 16 N -0.82 -43.91 10.94 21.82 0.24 -43.67 16 17 Si 0.98 39.95 29.59 68.60 2.03 41.98 16 18 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 19 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 20 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 21 C -0.23 -12.55 8.39 22.85 0.19 -12.35 16 22 C -0.12 -0.74 6.21 31.65 0.20 -0.54 16 23 C -0.15 -1.30 6.86 30.59 0.21 -1.09 16 24 C 0.51 9.24 8.43 87.90 0.74 9.99 16 25 O -0.59 -16.86 18.03 -3.03 -0.05 -16.92 16 26 N -0.72 -9.94 5.43 -419.99 -2.28 -12.22 16 27 H 0.06 0.49 6.79 -2.39 -0.02 0.47 16 28 H 0.08 0.44 8.14 -2.38 -0.02 0.42 16 29 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.41 5.51 7.05 -92.71 -0.65 4.86 16 33 H 0.42 9.69 8.84 -92.71 -0.82 8.87 16 34 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 35 H 0.12 4.73 8.06 -2.91 -0.02 4.71 16 36 H 0.10 5.78 6.17 -2.91 -0.02 5.77 16 37 H 0.29 13.80 8.30 -92.71 -0.77 13.03 16 38 H 0.09 4.85 6.48 -2.91 -0.02 4.84 16 39 H 0.09 0.64 7.91 -2.39 -0.02 0.62 16 40 H 0.13 0.18 7.89 -2.39 -0.02 0.16 16 41 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.13 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.41 5.70 8.72 -92.71 -0.81 4.90 16 Total: -1.00 -80.56 357.97 -0.21 -80.77 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -1.21 Total: 32.59 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 5.27 Total: -13.53 kcal Atomic # 7 Polarization: -90.80 SS G_CDS: -6.20 Total: -96.99 kcal Atomic # 8 Polarization: -44.70 SS G_CDS: -0.11 Total: -44.81 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -80.56 -0.21 -80.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365501184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.994 kcal (2) G-P(sol) polarization free energy of solvation -80.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds