Wall clock time and date at job start Tue Mar 31 2020 11:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 110.65951 * 2 1 4 4 N 1.34778 * 120.00077 * 56.80733 * 3 2 1 5 5 O 1.21283 * 120.00157 * 236.80982 * 3 2 1 6 6 C 1.54614 * 110.73896 * 236.80567 * 2 1 3 7 7 C 1.54006 * 105.04405 * 263.33022 * 6 2 1 8 8 N 1.47483 * 107.08402 * 1.31032 * 7 6 2 9 9 C 1.34777 * 127.03094 * 154.52084 * 8 7 6 10 10 O 1.21593 * 119.99727 * 180.02562 * 9 8 7 11 11 N 1.34769 * 120.00535 * 0.02562 * 9 8 7 12 12 C 1.39953 * 120.00573 * 174.85295 * 11 9 8 13 13 C 1.39282 * 119.95174 * 145.76851 * 12 11 9 14 14 C 1.38496 * 120.43005 * 180.02562 * 13 12 11 15 15 C 1.37675 * 120.31986 * 0.02562 * 14 13 12 16 16 C 1.40747 * 119.88729 * 359.97438 * 15 14 13 17 17 C 1.41405 * 120.21042 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99405 * 205.18376 * 17 16 15 19 19 C 1.39927 * 120.00333 * 25.17634 * 17 16 15 20 20 N 1.30830 * 119.99920 * 16.78856 * 19 17 16 21 21 Si 1.86804 * 120.00247 * 196.78824 * 19 17 16 22 22 H 1.48500 * 109.46890 * 90.00037 * 21 19 17 23 23 H 1.48500 * 109.47111 * 210.00225 * 21 19 17 24 24 H 1.48501 * 109.46919 * 330.00152 * 21 19 17 25 25 C 1.38239 * 119.94336 * 325.50017 * 12 11 9 26 26 C 1.48118 * 105.93022 * 334.54741 * 8 7 6 27 27 H 1.09000 * 109.47474 * 183.18981 * 1 2 3 28 28 H 1.09005 * 109.47165 * 303.19373 * 1 2 3 29 29 H 1.09000 * 109.46999 * 63.19305 * 1 2 3 30 30 H 0.97000 * 120.00162 * 359.97438 * 4 3 2 31 31 H 0.97003 * 119.99677 * 180.02562 * 4 3 2 32 32 H 1.09001 * 110.32630 * 144.44449 * 6 2 1 33 33 H 1.08997 * 110.41384 * 22.26997 * 6 2 1 34 34 H 1.09000 * 109.90974 * 120.66859 * 7 6 2 35 35 H 1.09000 * 109.91241 * 241.94310 * 7 6 2 36 36 H 0.97005 * 119.99794 * 354.85513 * 11 9 8 37 37 H 1.08002 * 119.78365 * 0.02562 * 13 12 11 38 38 H 1.08000 * 119.83486 * 179.97438 * 14 13 12 39 39 H 1.07998 * 120.05501 * 180.02562 * 15 14 13 40 40 H 0.96998 * 120.00199 * 180.02562 * 20 19 17 41 41 H 1.08004 * 120.16349 * 359.97438 * 25 12 11 42 42 H 1.09002 * 110.66417 * 280.85261 * 26 8 7 43 43 H 1.09006 * 110.79853 * 157.80262 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0616 1.4100 0.0000 4 7 1.7015 2.2661 0.9768 5 8 2.8136 1.7746 -0.8790 6 6 2.0775 -0.7916 -1.2100 7 6 2.3806 -2.1990 -0.6629 8 7 1.9937 -2.2032 0.7603 9 6 1.6325 -3.2703 1.5001 10 8 1.3360 -3.1263 2.6705 11 7 1.6000 -4.4969 0.9427 12 6 1.3303 -5.6187 1.7349 13 6 0.6159 -6.6897 1.2036 14 6 0.3429 -7.8045 1.9788 15 6 0.7750 -7.8657 3.2845 16 6 1.4981 -6.7910 3.8351 17 6 1.9456 -6.8469 5.1753 18 1 2.1232 -5.9336 5.7238 19 6 2.1580 -8.0853 5.7910 20 7 2.2665 -9.1674 5.0637 21 14 2.2868 -8.1937 7.6515 22 1 0.9371 -8.4179 8.2288 23 1 3.1772 -9.3233 8.0210 24 1 2.8485 -6.9261 8.1834 25 6 1.7783 -5.6643 3.0419 26 6 2.0826 -0.7947 1.2099 27 1 -0.3634 -1.0261 0.0572 28 1 -0.3634 0.5626 0.8600 29 1 -0.3633 0.4635 -0.9172 30 1 1.0998 1.9747 1.6795 31 1 2.0435 3.1738 0.9765 32 1 2.9892 -0.3269 -1.5853 33 1 1.3280 -0.8456 -1.9996 34 1 1.7988 -2.9423 -1.2080 35 1 3.4450 -2.4133 -0.7590 36 1 1.7637 -4.6023 -0.0076 37 1 0.2724 -6.6506 0.1803 38 1 -0.2122 -8.6293 1.5571 39 1 0.5601 -8.7372 3.8851 40 1 2.4134 -10.0260 5.4904 41 1 2.3365 -4.8363 3.4535 42 1 3.1181 -0.5195 1.4103 43 1 1.4645 -0.6304 2.0926 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365853737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:06 Heat of formation + Delta-G solvation = -41.691947 kcal Electronic energy + Delta-G solvation = -26178.285009 eV Core-core repulsion = 22416.017047 eV Total energy + Delta-G solvation = -3762.267962 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.92848 -39.65703 -37.87518 -36.78124 -34.44399 -34.19931 -33.14091 -32.38610 -29.81363 -29.73130 -28.31686 -26.72222 -25.26595 -24.14029 -22.77741 -21.31202 -20.81866 -19.64156 -19.39324 -18.31701 -17.71647 -17.07687 -17.01900 -15.69386 -15.61812 -15.28575 -15.23140 -14.65406 -14.55190 -14.32793 -14.13654 -13.68783 -13.36975 -13.13638 -12.85751 -12.71161 -12.66576 -12.26936 -12.09781 -11.71317 -11.60177 -11.32786 -11.17137 -11.11208 -11.03999 -10.88172 -10.43743 -10.24460 -10.14875 -10.04675 -9.68518 -9.48099 -9.09830 -8.99921 -8.66472 -7.41389 -6.86642 -6.67538 -4.30444 2.23102 2.62618 2.80143 2.96261 3.11383 3.16217 3.20675 3.24518 3.65678 3.96030 3.99143 4.22965 4.37072 4.49562 4.68566 4.70661 4.89051 4.97605 5.23560 5.36084 5.46872 5.49805 5.57286 5.71733 5.74612 5.76525 5.85148 6.10947 6.26941 6.41658 6.42509 6.80695 6.87009 6.94480 7.07414 7.12378 7.28266 7.36644 7.69775 7.83299 7.89116 8.02354 8.14045 8.27467 8.40085 8.69443 8.91468 9.00105 9.05011 10.25017 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021860 B = 0.002835 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.594205 B = 9874.358635 C =10718.131519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.101 4.101 3 C 0.537 3.463 4 N -0.852 5.852 5 O -0.540 6.540 6 C -0.114 4.114 7 C 0.100 3.900 8 N -0.640 5.640 9 C 0.722 3.278 10 O -0.562 6.562 11 N -0.677 5.677 12 C 0.169 3.831 13 C -0.262 4.262 14 C -0.091 4.091 15 C -0.173 4.173 16 C 0.121 3.879 17 C -0.458 4.458 18 H 0.078 0.922 19 C 0.076 3.924 20 N -0.796 5.796 21 Si 0.908 3.092 22 H -0.268 1.268 23 H -0.279 1.279 24 H -0.262 1.262 25 C -0.209 4.209 26 C 0.142 3.858 27 H 0.073 0.927 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.404 0.596 31 H 0.402 0.598 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.394 0.606 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.279 0.721 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 15.963 -9.904 18.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.105 4.105 3 C 0.321 3.679 4 N -0.415 5.415 5 O -0.416 6.416 6 C -0.153 4.153 7 C -0.024 4.024 8 N -0.381 5.381 9 C 0.425 3.575 10 O -0.437 6.437 11 N -0.324 5.324 12 C 0.077 3.923 13 C -0.284 4.284 14 C -0.111 4.111 15 C -0.193 4.193 16 C 0.118 3.882 17 C -0.488 4.488 18 H 0.096 0.904 19 C -0.141 4.141 20 N -0.422 5.422 21 Si 0.733 3.267 22 H -0.193 1.193 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.231 4.231 26 C 0.018 3.982 27 H 0.092 0.908 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.233 0.767 31 H 0.233 0.767 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.228 0.772 37 H 0.106 0.894 38 H 0.109 0.891 39 H 0.137 0.863 40 H 0.090 0.910 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -1.722 15.783 -9.585 18.545 hybrid contribution 0.041 0.055 0.555 0.559 sum -1.680 15.838 -9.030 18.308 Atomic orbital electron populations 1.21768 0.91210 1.03766 1.02307 1.21917 0.97994 0.91883 0.98741 1.20188 0.79722 0.87035 0.80949 1.43868 1.52314 1.15965 1.29354 1.90735 1.35851 1.78185 1.36823 1.22519 1.03216 0.93478 0.96075 1.22087 1.00504 0.97776 0.81985 1.47796 1.72723 1.06440 1.11102 1.15382 0.78346 0.79509 0.84301 1.90987 1.54592 1.83783 1.14361 1.42576 1.73982 1.04375 1.11420 1.17228 0.98378 0.85094 0.91643 1.19997 1.11610 0.97190 0.99618 1.20441 0.99844 0.95922 0.94848 1.21343 1.02144 1.01071 0.94745 1.17483 0.88216 0.90035 0.92491 1.19587 1.39445 0.93021 0.96762 0.90381 1.25895 0.92476 0.95251 1.00523 1.69830 1.34981 0.99910 1.37450 0.86310 0.78986 0.78803 0.82595 1.19292 1.20394 1.18620 1.20995 1.07871 1.01289 0.92959 1.22143 1.01084 0.79395 0.95624 0.90758 0.91920 0.91758 0.76724 0.76697 0.88520 0.89965 0.90888 0.91238 0.77228 0.89404 0.89056 0.86334 0.90988 0.87582 0.90938 0.88901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.03 8.40 37.16 0.31 -0.72 16 2 C -0.10 -0.89 0.80 -153.79 -0.12 -1.01 16 3 C 0.54 4.97 6.82 -10.99 -0.07 4.90 16 4 N -0.85 -4.95 8.76 31.22 0.27 -4.68 16 5 O -0.54 -6.96 16.28 5.56 0.09 -6.87 16 6 C -0.11 -1.00 5.91 -25.36 -0.15 -1.15 16 7 C 0.10 0.98 6.70 -2.98 -0.02 0.96 16 8 N -0.64 -8.55 3.20 -175.47 -0.56 -9.11 16 9 C 0.72 13.32 8.27 -86.93 -0.72 12.60 16 10 O -0.56 -12.85 14.31 5.28 0.08 -12.77 16 11 N -0.68 -12.43 5.30 -14.27 -0.08 -12.51 16 12 C 0.17 3.87 6.25 -83.76 -0.52 3.35 16 13 C -0.26 -5.82 9.97 -39.10 -0.39 -6.21 16 14 C -0.09 -2.15 10.02 -39.69 -0.40 -2.55 16 15 C -0.17 -4.58 8.69 -38.84 -0.34 -4.92 16 16 C 0.12 3.35 5.57 -106.85 -0.59 2.76 16 17 C -0.46 -12.70 9.05 -37.74 -0.34 -13.04 16 18 H 0.08 2.14 7.90 -52.49 -0.41 1.72 16 19 C 0.08 1.95 5.16 -17.35 -0.09 1.86 16 20 N -0.80 -20.87 10.94 55.55 0.61 -20.26 16 21 Si 0.91 19.23 29.59 -169.99 -5.03 14.20 16 22 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 25 C -0.21 -5.51 8.39 -38.69 -0.32 -5.83 16 26 C 0.14 1.56 5.97 -2.13 -0.01 1.55 16 27 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 28 H 0.06 0.40 7.40 -51.93 -0.38 0.01 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.40 1.55 8.09 -40.82 -0.33 1.22 16 31 H 0.40 1.87 8.93 -40.82 -0.36 1.51 16 32 H 0.10 0.93 6.85 -51.93 -0.36 0.57 16 33 H 0.08 0.62 7.86 -51.93 -0.41 0.21 16 34 H 0.07 0.63 7.23 -51.93 -0.38 0.25 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.39 5.74 7.36 -40.82 -0.30 5.44 16 37 H 0.09 1.68 8.06 -52.49 -0.42 1.25 16 38 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 39 H 0.12 3.21 6.16 -52.49 -0.32 2.89 16 40 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 41 H 0.11 2.90 6.48 -52.48 -0.34 2.56 16 42 H 0.07 0.78 8.04 -51.93 -0.42 0.37 16 43 H 0.09 1.05 7.77 -51.93 -0.40 0.65 16 LS Contribution 354.53 15.07 5.34 5.34 Total: -1.00 -34.06 354.53 -8.73 -42.79 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -5.66 Total: 11.33 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: -3.79 Total: -7.46 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: 0.24 Total: -46.56 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: 0.17 Total: -19.64 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -34.06 -8.73 -42.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365853737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.097 kcal (2) G-P(sol) polarization free energy of solvation -34.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds