Wall clock time and date at job start Tue Mar 31 2020 11:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50695 * 110.65951 * 2 1 4 4 N 1.34778 * 120.00077 * 56.80733 * 3 2 1 5 5 O 1.21283 * 120.00157 * 236.80982 * 3 2 1 6 6 C 1.54614 * 110.73896 * 236.80567 * 2 1 3 7 7 C 1.54006 * 105.04405 * 263.33022 * 6 2 1 8 8 N 1.47483 * 107.08402 * 1.31032 * 7 6 2 9 9 C 1.34777 * 127.03094 * 154.52084 * 8 7 6 10 10 O 1.21593 * 119.99727 * 180.02562 * 9 8 7 11 11 N 1.34769 * 120.00535 * 0.02562 * 9 8 7 12 12 C 1.39953 * 120.00573 * 174.85295 * 11 9 8 13 13 C 1.39282 * 119.95174 * 145.76851 * 12 11 9 14 14 C 1.38496 * 120.43005 * 180.02562 * 13 12 11 15 15 C 1.37675 * 120.31986 * 0.02562 * 14 13 12 16 16 C 1.40747 * 119.88729 * 359.97438 * 15 14 13 17 17 C 1.41405 * 120.21042 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99405 * 205.18376 * 17 16 15 19 19 C 1.39927 * 120.00333 * 25.17634 * 17 16 15 20 20 N 1.30830 * 119.99920 * 16.78856 * 19 17 16 21 21 Si 1.86804 * 120.00247 * 196.78824 * 19 17 16 22 22 H 1.48500 * 109.46890 * 90.00037 * 21 19 17 23 23 H 1.48500 * 109.47111 * 210.00225 * 21 19 17 24 24 H 1.48501 * 109.46919 * 330.00152 * 21 19 17 25 25 C 1.38239 * 119.94336 * 325.50017 * 12 11 9 26 26 C 1.48118 * 105.93022 * 334.54741 * 8 7 6 27 27 H 1.09000 * 109.47474 * 183.18981 * 1 2 3 28 28 H 1.09005 * 109.47165 * 303.19373 * 1 2 3 29 29 H 1.09000 * 109.46999 * 63.19305 * 1 2 3 30 30 H 0.97000 * 120.00162 * 359.97438 * 4 3 2 31 31 H 0.97003 * 119.99677 * 180.02562 * 4 3 2 32 32 H 1.09001 * 110.32630 * 144.44449 * 6 2 1 33 33 H 1.08997 * 110.41384 * 22.26997 * 6 2 1 34 34 H 1.09000 * 109.90974 * 120.66859 * 7 6 2 35 35 H 1.09000 * 109.91241 * 241.94310 * 7 6 2 36 36 H 0.97005 * 119.99794 * 354.85513 * 11 9 8 37 37 H 1.08002 * 119.78365 * 0.02562 * 13 12 11 38 38 H 1.08000 * 119.83486 * 179.97438 * 14 13 12 39 39 H 1.07998 * 120.05501 * 180.02562 * 15 14 13 40 40 H 0.96998 * 120.00199 * 180.02562 * 20 19 17 41 41 H 1.08004 * 120.16349 * 359.97438 * 25 12 11 42 42 H 1.09002 * 110.66417 * 280.85261 * 26 8 7 43 43 H 1.09006 * 110.79853 * 157.80262 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0616 1.4100 0.0000 4 7 1.7015 2.2661 0.9768 5 8 2.8136 1.7746 -0.8790 6 6 2.0775 -0.7916 -1.2100 7 6 2.3806 -2.1990 -0.6629 8 7 1.9937 -2.2032 0.7603 9 6 1.6325 -3.2703 1.5001 10 8 1.3360 -3.1263 2.6705 11 7 1.6000 -4.4969 0.9427 12 6 1.3303 -5.6187 1.7349 13 6 0.6159 -6.6897 1.2036 14 6 0.3429 -7.8045 1.9788 15 6 0.7750 -7.8657 3.2845 16 6 1.4981 -6.7910 3.8351 17 6 1.9456 -6.8469 5.1753 18 1 2.1232 -5.9336 5.7238 19 6 2.1580 -8.0853 5.7910 20 7 2.2665 -9.1674 5.0637 21 14 2.2868 -8.1937 7.6515 22 1 0.9371 -8.4179 8.2288 23 1 3.1772 -9.3233 8.0210 24 1 2.8485 -6.9261 8.1834 25 6 1.7783 -5.6643 3.0419 26 6 2.0826 -0.7947 1.2099 27 1 -0.3634 -1.0261 0.0572 28 1 -0.3634 0.5626 0.8600 29 1 -0.3633 0.4635 -0.9172 30 1 1.0998 1.9747 1.6795 31 1 2.0435 3.1738 0.9765 32 1 2.9892 -0.3269 -1.5853 33 1 1.3280 -0.8456 -1.9996 34 1 1.7988 -2.9423 -1.2080 35 1 3.4450 -2.4133 -0.7590 36 1 1.7637 -4.6023 -0.0076 37 1 0.2724 -6.6506 0.1803 38 1 -0.2122 -8.6293 1.5571 39 1 0.5601 -8.7372 3.8851 40 1 2.4134 -10.0260 5.4904 41 1 2.3365 -4.8363 3.4535 42 1 3.1181 -0.5195 1.4103 43 1 1.4645 -0.6304 2.0926 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365853737.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:06 Heat of formation + Delta-G solvation = -66.263827 kcal Electronic energy + Delta-G solvation = -26179.350525 eV Core-core repulsion = 22416.017047 eV Total energy + Delta-G solvation = -3763.333479 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.94298 -40.89623 -39.29178 -38.18849 -36.19426 -35.06725 -34.73649 -33.43545 -31.73305 -30.59658 -29.94576 -27.72921 -27.20993 -25.17120 -23.58096 -23.00661 -22.65083 -20.87337 -20.35556 -19.71195 -19.14960 -18.08672 -17.80010 -17.38597 -17.02151 -16.63884 -16.41953 -16.09102 -16.00690 -15.55722 -15.13723 -14.84539 -14.74742 -14.46192 -14.27913 -13.94447 -13.65872 -13.51308 -13.43991 -13.10932 -12.95234 -12.89851 -12.76815 -12.48712 -12.16860 -12.05588 -11.96408 -11.74634 -11.53820 -11.26358 -11.04584 -10.93207 -10.77892 -10.68514 -9.82145 -9.37524 -8.71330 -8.57248 -6.35509 0.93024 1.03384 1.36487 1.36984 1.50251 1.50878 1.62316 2.14034 2.22129 2.51836 2.75384 2.95399 3.30541 3.48074 3.75539 3.78355 4.03464 4.13993 4.21872 4.48393 4.49452 4.54063 4.64522 4.66879 4.80747 4.83004 4.91775 5.04404 5.06709 5.11840 5.13690 5.14352 5.22887 5.30783 5.36161 5.75195 5.83736 5.87419 6.06051 6.12402 6.16187 6.37022 6.38696 6.70445 6.92088 6.96292 7.03403 7.26832 7.53969 8.34789 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021860 B = 0.002835 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.594205 B = 9874.358635 C =10718.131519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.090 4.090 3 C 0.539 3.461 4 N -0.834 5.834 5 O -0.578 6.578 6 C -0.109 4.109 7 C 0.095 3.905 8 N -0.633 5.633 9 C 0.718 3.282 10 O -0.614 6.614 11 N -0.668 5.668 12 C 0.177 3.823 13 C -0.250 4.250 14 C -0.089 4.089 15 C -0.199 4.199 16 C 0.091 3.909 17 C -0.503 4.503 18 H 0.062 0.938 19 C 0.038 3.962 20 N -0.822 5.822 21 Si 0.981 3.019 22 H -0.259 1.259 23 H -0.262 1.262 24 H -0.265 1.265 25 C -0.236 4.236 26 C 0.136 3.864 27 H 0.058 0.942 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.415 0.585 31 H 0.411 0.589 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.415 0.585 37 H 0.132 0.868 38 H 0.124 0.876 39 H 0.105 0.895 40 H 0.289 0.711 41 H 0.082 0.918 42 H 0.074 0.926 43 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.779 16.506 -11.547 20.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.095 4.095 3 C 0.323 3.677 4 N -0.398 5.398 5 O -0.457 6.457 6 C -0.147 4.147 7 C -0.027 4.027 8 N -0.371 5.371 9 C 0.421 3.579 10 O -0.493 6.493 11 N -0.316 5.316 12 C 0.084 3.916 13 C -0.272 4.272 14 C -0.108 4.108 15 C -0.219 4.219 16 C 0.088 3.912 17 C -0.533 4.533 18 H 0.080 0.920 19 C -0.177 4.177 20 N -0.448 5.448 21 Si 0.802 3.198 22 H -0.184 1.184 23 H -0.186 1.186 24 H -0.189 1.189 25 C -0.258 4.258 26 C 0.013 3.987 27 H 0.078 0.922 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.246 0.754 31 H 0.243 0.757 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.253 0.747 37 H 0.149 0.851 38 H 0.142 0.858 39 H 0.122 0.878 40 H 0.100 0.900 41 H 0.100 0.900 42 H 0.092 0.908 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.475 16.380 -11.288 20.046 hybrid contribution 0.269 0.008 0.915 0.954 sum -2.207 16.387 -10.373 19.519 Atomic orbital electron populations 1.21769 0.90102 1.03203 1.03729 1.21820 0.98695 0.91444 0.97494 1.20181 0.79278 0.87298 0.80993 1.43753 1.51510 1.15973 1.28514 1.90728 1.37637 1.78834 1.38493 1.22501 1.03554 0.92356 0.96293 1.22368 1.01343 0.99267 0.79738 1.47712 1.70907 1.06022 1.12450 1.15517 0.78167 0.80276 0.83934 1.90959 1.56776 1.84675 1.16858 1.42325 1.73852 1.03373 1.12027 1.17276 0.96955 0.86554 0.90858 1.20425 1.09645 0.95824 1.01274 1.20822 0.98952 0.97288 0.93709 1.21311 1.03754 1.00558 0.96314 1.17809 0.89072 0.91177 0.93108 1.19737 1.42262 0.93556 0.97732 0.92018 1.26682 0.91424 0.94228 1.05321 1.69857 1.34972 1.00521 1.39458 0.85227 0.79463 0.78933 0.76177 1.18403 1.18621 1.18943 1.20931 1.09496 1.00566 0.94831 1.22309 1.01358 0.78440 0.96632 0.92246 0.90574 0.90370 0.75376 0.75722 0.89114 0.88096 0.88964 0.90458 0.74735 0.85052 0.85777 0.87754 0.90017 0.90016 0.90780 0.89472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 8.40 71.98 0.60 -1.12 16 2 C -0.09 -1.42 0.80 -51.72 -0.04 -1.46 16 3 C 0.54 9.05 6.82 87.66 0.60 9.65 16 4 N -0.83 -8.14 8.76 -173.53 -1.52 -9.66 16 5 O -0.58 -14.13 16.28 -3.04 -0.05 -14.18 16 6 C -0.11 -1.64 5.91 31.48 0.19 -1.45 16 7 C 0.09 1.64 6.70 86.53 0.58 2.22 16 8 N -0.63 -16.23 3.20 -827.33 -2.65 -18.88 16 9 C 0.72 26.40 8.27 179.06 1.48 27.88 16 10 O -0.61 -29.02 14.31 -4.01 -0.06 -29.08 16 11 N -0.67 -23.69 5.30 -317.33 -1.68 -25.37 16 12 C 0.18 8.07 6.25 38.10 0.24 8.31 16 13 C -0.25 -10.50 9.97 22.58 0.23 -10.27 16 14 C -0.09 -4.06 10.02 22.20 0.22 -3.84 16 15 C -0.20 -10.79 8.69 22.75 0.20 -10.59 16 16 C 0.09 5.30 5.57 -21.31 -0.12 5.18 16 17 C -0.50 -29.51 9.05 23.46 0.21 -29.30 16 18 H 0.06 3.65 7.90 -2.91 -0.02 3.63 16 19 C 0.04 2.03 5.16 85.25 0.44 2.47 16 20 N -0.82 -44.15 10.94 21.82 0.24 -43.91 16 21 Si 0.98 40.33 29.59 68.60 2.03 42.36 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 25 C -0.24 -12.96 8.39 22.85 0.19 -12.77 16 26 C 0.14 2.88 5.97 86.73 0.52 3.40 16 27 H 0.06 1.00 8.08 -2.39 -0.02 0.98 16 28 H 0.08 0.79 7.40 -2.38 -0.02 0.77 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.42 2.35 8.09 -92.71 -0.75 1.60 16 31 H 0.41 3.06 8.93 -92.71 -0.83 2.24 16 32 H 0.09 1.56 6.85 -2.39 -0.02 1.54 16 33 H 0.10 1.18 7.86 -2.39 -0.02 1.16 16 34 H 0.09 1.27 7.23 -2.39 -0.02 1.25 16 35 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.41 10.96 7.36 -92.70 -0.68 10.27 16 37 H 0.13 4.38 8.06 -2.91 -0.02 4.35 16 38 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 39 H 0.10 5.84 6.16 -2.91 -0.02 5.82 16 40 H 0.29 13.89 8.30 -92.71 -0.77 13.12 16 41 H 0.08 4.78 6.48 -2.91 -0.02 4.76 16 42 H 0.07 1.56 8.04 -2.39 -0.02 1.54 16 43 H 0.09 1.96 7.77 -2.38 -0.02 1.94 16 Total: -1.00 -78.23 354.53 0.66 -77.57 By element: Atomic # 1 Polarization: 34.01 SS G_CDS: -1.18 Total: 32.83 kcal Atomic # 6 Polarization: -17.23 SS G_CDS: 5.53 Total: -11.69 kcal Atomic # 7 Polarization: -92.20 SS G_CDS: -5.61 Total: -97.81 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -0.11 Total: -43.26 kcal Atomic # 14 Polarization: 40.33 SS G_CDS: 2.03 Total: 42.36 kcal Total: -78.23 0.66 -77.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365853737.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.306 kcal (2) G-P(sol) polarization free energy of solvation -78.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds