Wall clock time and date at job start Tue Mar 31 2020 11:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 110.64537 * 2 1 4 4 N 1.34787 * 119.99670 * 298.31300 * 3 2 1 5 5 O 1.21284 * 120.00551 * 118.31080 * 3 2 1 6 6 C 1.55164 * 110.71798 * 123.33454 * 2 1 3 7 7 C 1.55131 * 101.48723 * 82.69599 * 6 2 1 8 8 N 1.47431 * 104.72088 * 37.28945 * 7 6 2 9 9 C 1.34777 * 125.64389 * 155.81599 * 8 7 6 10 10 O 1.21584 * 120.00083 * 179.69697 * 9 8 7 11 11 N 1.34780 * 120.00216 * 359.69972 * 9 8 7 12 12 C 1.39951 * 120.00152 * 185.09032 * 11 9 8 13 13 C 1.39283 * 119.94954 * 213.90544 * 12 11 9 14 14 C 1.38489 * 120.43200 * 179.97438 * 13 12 11 15 15 C 1.37684 * 120.32215 * 0.05041 * 14 13 12 16 16 C 1.40741 * 119.88098 * 359.97438 * 15 14 13 17 17 C 1.41413 * 120.21040 * 179.97438 * 16 15 14 18 18 H 1.07993 * 119.99475 * 330.28488 * 17 16 15 19 19 C 1.39934 * 120.00009 * 150.28626 * 17 16 15 20 20 N 1.30831 * 119.99966 * 346.30868 * 19 17 16 21 21 Si 1.86799 * 119.99689 * 166.30589 * 19 17 16 22 22 H 1.48501 * 109.47166 * 265.02577 * 21 19 17 23 23 H 1.48502 * 109.47030 * 25.02420 * 21 19 17 24 24 H 1.48496 * 109.47015 * 145.02616 * 21 19 17 25 25 C 1.38243 * 119.94671 * 34.18964 * 12 11 9 26 26 C 1.47023 * 108.70552 * 335.55901 * 8 7 6 27 27 H 1.08997 * 109.47026 * 181.69315 * 1 2 3 28 28 H 1.08997 * 109.46702 * 301.69139 * 1 2 3 29 29 H 1.08993 * 109.47032 * 61.68679 * 1 2 3 30 30 H 0.96996 * 119.99975 * 359.97438 * 4 3 2 31 31 H 0.96992 * 119.99677 * 180.02562 * 4 3 2 32 32 H 1.09004 * 110.99869 * 200.93278 * 6 2 1 33 33 H 1.08992 * 111.00356 * 324.74793 * 6 2 1 34 34 H 1.09004 * 110.49324 * 278.45828 * 7 6 2 35 35 H 1.08992 * 110.34524 * 156.05698 * 7 6 2 36 36 H 0.97001 * 120.00004 * 5.09032 * 11 9 8 37 37 H 1.08000 * 119.78574 * 0.02562 * 13 12 11 38 38 H 1.07997 * 119.84196 * 180.02562 * 14 13 12 39 39 H 1.07995 * 120.06322 * 179.97438 * 15 14 13 40 40 H 0.96994 * 119.99564 * 180.02562 * 20 19 17 41 41 H 1.08004 * 120.15890 * 0.02562 * 25 12 11 42 42 H 1.08998 * 109.88140 * 120.70406 * 26 8 7 43 43 H 1.09002 * 109.87562 * 241.86724 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0613 1.4102 0.0000 4 7 1.7808 2.2360 -1.0277 5 8 2.7413 1.8021 0.9247 6 6 2.0789 -0.7975 1.2125 7 6 2.0074 -2.2537 0.6824 8 7 2.3715 -2.1520 -0.7426 9 6 2.8849 -3.1454 -1.4949 10 8 3.1436 -2.9491 -2.6666 11 7 3.1114 -4.3564 -0.9486 12 6 3.7422 -5.3556 -1.6985 13 6 3.3901 -6.6905 -1.5139 14 6 4.0075 -7.6872 -2.2510 15 6 4.9779 -7.3690 -3.1745 16 6 5.3445 -6.0245 -3.3714 17 6 6.3406 -5.6899 -4.3177 18 1 7.1345 -6.3887 -4.5359 19 6 6.2977 -4.4532 -4.9712 20 7 5.2138 -3.7225 -4.9179 21 14 7.7881 -3.8458 -5.9195 22 1 8.6008 -2.9586 -5.0490 23 1 8.6093 -5.0068 -6.3474 24 1 7.3390 -3.0893 -7.1157 25 6 4.7181 -5.0166 -2.6171 26 6 2.0760 -0.7892 -1.2086 27 1 -0.3633 -1.0272 0.0304 28 1 -0.3632 0.5399 0.8744 29 1 -0.3633 0.4874 -0.9047 30 1 1.2373 1.9224 -1.7674 31 1 2.1231 3.1435 -1.0279 32 1 3.1061 -0.5098 1.4366 33 1 1.4399 -0.6692 2.0861 34 1 0.9973 -2.6493 0.7885 35 1 2.7207 -2.8852 1.2120 36 1 2.8372 -4.5356 -0.0355 37 1 2.6300 -6.9499 -0.7919 38 1 3.7268 -8.7191 -2.1004 39 1 5.4569 -8.1496 -3.7467 40 1 5.1840 -2.8655 -5.3712 41 1 4.9954 -3.9822 -2.7574 42 1 2.9868 -0.3182 -1.5781 43 1 1.3262 -0.8223 -1.9991 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365853738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:09 Heat of formation + Delta-G solvation = -38.885150 kcal Electronic energy + Delta-G solvation = -26666.003181 eV Core-core repulsion = 22903.856931 eV Total energy + Delta-G solvation = -3762.146250 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.83205 -39.50225 -37.80425 -36.66434 -34.21130 -34.06639 -33.10636 -32.47136 -29.56057 -29.46459 -28.34253 -26.70941 -25.16601 -24.10461 -22.63636 -21.36221 -20.64898 -19.56870 -19.17873 -18.27480 -17.54476 -16.93561 -16.66653 -16.10935 -15.55226 -15.05099 -14.94947 -14.63118 -14.54702 -14.21157 -14.08313 -13.52596 -13.03268 -12.91757 -12.84445 -12.70289 -12.62815 -12.22254 -12.10911 -11.77400 -11.51597 -11.27743 -11.12838 -11.05050 -11.03969 -10.69262 -10.46948 -10.13613 -9.99449 -9.96099 -9.64106 -9.26270 -8.98654 -8.92587 -8.41526 -7.25254 -6.83768 -6.45646 -4.21872 2.32289 2.76563 2.90178 3.06540 3.17598 3.20935 3.27107 3.29306 3.86595 3.99978 4.07529 4.25623 4.48342 4.54458 4.74827 4.81134 4.91880 5.08070 5.24007 5.42258 5.46307 5.54917 5.65812 5.71311 5.77393 5.79735 5.97654 6.24518 6.29932 6.49041 6.49104 6.78946 6.98947 7.02382 7.07713 7.23525 7.35928 7.47608 7.80333 7.92812 7.96975 7.99729 8.17780 8.41221 8.57733 8.73353 9.04657 9.08423 9.24453 10.41347 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013898 B = 0.003886 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.199175 B = 7203.642728 C = 8763.918569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.100 4.100 3 C 0.538 3.462 4 N -0.852 5.852 5 O -0.539 6.539 6 C -0.106 4.106 7 C 0.098 3.902 8 N -0.640 5.640 9 C 0.706 3.294 10 O -0.528 6.528 11 N -0.680 5.680 12 C 0.159 3.841 13 C -0.265 4.265 14 C -0.081 4.081 15 C -0.236 4.236 16 C 0.123 3.877 17 C -0.470 4.470 18 H 0.076 0.924 19 C 0.072 3.928 20 N -0.763 5.763 21 Si 0.902 3.098 22 H -0.271 1.271 23 H -0.263 1.263 24 H -0.279 1.279 25 C -0.152 4.152 26 C 0.146 3.854 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.403 0.597 31 H 0.402 0.598 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.390 0.610 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.279 0.721 41 H 0.133 0.867 42 H 0.068 0.932 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.671 10.037 9.719 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.103 4.103 3 C 0.322 3.678 4 N -0.415 5.415 5 O -0.414 6.414 6 C -0.144 4.144 7 C -0.026 4.026 8 N -0.382 5.382 9 C 0.408 3.592 10 O -0.400 6.400 11 N -0.327 5.327 12 C 0.067 3.933 13 C -0.286 4.286 14 C -0.100 4.100 15 C -0.256 4.256 16 C 0.119 3.881 17 C -0.500 4.500 18 H 0.094 0.906 19 C -0.148 4.148 20 N -0.387 5.387 21 Si 0.726 3.274 22 H -0.196 1.196 23 H -0.187 1.187 24 H -0.204 1.204 25 C -0.173 4.173 26 C 0.022 3.978 27 H 0.093 0.907 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.232 0.768 31 H 0.233 0.767 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.224 0.776 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.090 0.910 41 H 0.150 0.850 42 H 0.087 0.913 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.124 10.455 9.343 17.294 hybrid contribution 0.209 0.516 -0.389 0.679 sum -9.915 10.971 8.954 17.287 Atomic orbital electron populations 1.21814 0.91143 1.03641 1.02601 1.21884 0.97805 0.92121 0.98534 1.20172 0.79032 0.86928 0.81713 1.43865 1.56764 1.16762 1.24147 1.90749 1.38254 1.76848 1.35592 1.22754 1.03322 0.92552 0.95780 1.22350 1.00449 0.97502 0.82270 1.47536 1.69205 1.10913 1.10587 1.15596 0.78985 0.79959 0.84680 1.91171 1.55047 1.80595 1.13175 1.42547 1.62994 1.10999 1.16191 1.17391 0.94267 0.85925 0.95765 1.19979 1.07996 0.91511 1.09157 1.20277 0.97013 0.96278 0.96461 1.21017 1.03570 0.96530 1.04525 1.17481 0.90560 0.90247 0.89771 1.19494 1.09861 1.00729 1.19894 0.90564 1.25924 0.96282 0.96292 0.96289 1.69907 1.25189 1.10604 1.32950 0.86415 0.82266 0.79452 0.79218 1.19649 1.18737 1.20434 1.21343 0.97610 1.01135 0.97246 1.21590 1.00498 0.81583 0.94143 0.90735 0.91618 0.91706 0.76802 0.76703 0.89149 0.89363 0.91443 0.90555 0.77610 0.89475 0.89171 0.89009 0.91002 0.84963 0.91342 0.90806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 8.35 37.16 0.31 -0.60 16 2 C -0.10 -0.95 0.75 -153.82 -0.12 -1.06 16 3 C 0.54 5.72 6.66 -10.98 -0.07 5.64 16 4 N -0.85 -6.04 8.76 31.22 0.27 -5.76 16 5 O -0.54 -7.83 16.62 5.55 0.09 -7.74 16 6 C -0.11 -1.04 5.65 -24.46 -0.14 -1.17 16 7 C 0.10 1.03 6.23 -2.40 -0.01 1.02 16 8 N -0.64 -9.51 3.33 -176.09 -0.59 -10.10 16 9 C 0.71 14.29 8.22 -86.92 -0.71 13.57 16 10 O -0.53 -13.31 14.40 5.29 0.08 -13.24 16 11 N -0.68 -13.32 5.29 -14.27 -0.08 -13.40 16 12 C 0.16 3.80 6.26 -83.76 -0.52 3.27 16 13 C -0.26 -5.93 9.97 -39.10 -0.39 -6.32 16 14 C -0.08 -1.86 10.02 -39.69 -0.40 -2.26 16 15 C -0.24 -5.99 9.79 -38.84 -0.38 -6.37 16 16 C 0.12 3.42 5.52 -106.85 -0.59 2.83 16 17 C -0.47 -13.07 9.04 -37.74 -0.34 -13.41 16 18 H 0.08 2.03 7.88 -52.49 -0.41 1.61 16 19 C 0.07 1.92 5.18 -17.34 -0.09 1.83 16 20 N -0.76 -21.39 11.09 55.55 0.62 -20.77 16 21 Si 0.90 19.81 29.58 -169.99 -5.03 14.79 16 22 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 23 H -0.26 -5.66 7.11 56.52 0.40 -5.26 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 C -0.15 -4.16 7.25 -38.68 -0.28 -4.44 16 26 C 0.15 1.84 5.98 -3.06 -0.02 1.82 16 27 H 0.07 0.51 7.42 -51.93 -0.39 0.13 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.35 7.83 -51.93 -0.41 -0.06 16 30 H 0.40 1.94 8.49 -40.82 -0.35 1.60 16 31 H 0.40 2.43 8.93 -40.82 -0.36 2.06 16 32 H 0.09 1.07 7.50 -51.93 -0.39 0.68 16 33 H 0.09 0.69 8.04 -51.93 -0.42 0.27 16 34 H 0.07 0.59 7.69 -51.93 -0.40 0.19 16 35 H 0.08 0.77 7.37 -51.93 -0.38 0.38 16 36 H 0.39 6.05 7.35 -40.82 -0.30 5.75 16 37 H 0.09 1.69 8.06 -52.49 -0.42 1.26 16 38 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 39 H 0.09 2.18 8.06 -52.49 -0.42 1.76 16 40 H 0.28 7.31 8.30 -40.82 -0.34 6.97 16 41 H 0.13 3.91 4.83 -52.48 -0.25 3.66 16 42 H 0.07 0.99 7.81 -51.93 -0.41 0.58 16 43 H 0.07 0.88 7.84 -51.93 -0.41 0.47 16 LS Contribution 354.84 15.07 5.35 5.35 Total: -1.00 -35.51 354.84 -8.74 -44.25 By element: Atomic # 1 Polarization: 17.97 SS G_CDS: -5.70 Total: 12.27 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: -3.76 Total: -5.65 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.23 Total: -50.03 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: 0.17 Total: -20.98 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.51 -8.74 -44.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365853738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.369 kcal (2) G-P(sol) polarization free energy of solvation -35.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds