Wall clock time and date at job start Tue Mar 31 2020 11:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50696 * 110.64537 * 2 1 4 4 N 1.34787 * 119.99670 * 298.31300 * 3 2 1 5 5 O 1.21284 * 120.00551 * 118.31080 * 3 2 1 6 6 C 1.55164 * 110.71798 * 123.33454 * 2 1 3 7 7 C 1.55131 * 101.48723 * 82.69599 * 6 2 1 8 8 N 1.47431 * 104.72088 * 37.28945 * 7 6 2 9 9 C 1.34777 * 125.64389 * 155.81599 * 8 7 6 10 10 O 1.21584 * 120.00083 * 179.69697 * 9 8 7 11 11 N 1.34780 * 120.00216 * 359.69972 * 9 8 7 12 12 C 1.39951 * 120.00152 * 185.09032 * 11 9 8 13 13 C 1.39283 * 119.94954 * 213.90544 * 12 11 9 14 14 C 1.38489 * 120.43200 * 179.97438 * 13 12 11 15 15 C 1.37684 * 120.32215 * 0.05041 * 14 13 12 16 16 C 1.40741 * 119.88098 * 359.97438 * 15 14 13 17 17 C 1.41413 * 120.21040 * 179.97438 * 16 15 14 18 18 H 1.07993 * 119.99475 * 330.28488 * 17 16 15 19 19 C 1.39934 * 120.00009 * 150.28626 * 17 16 15 20 20 N 1.30831 * 119.99966 * 346.30868 * 19 17 16 21 21 Si 1.86799 * 119.99689 * 166.30589 * 19 17 16 22 22 H 1.48501 * 109.47166 * 265.02577 * 21 19 17 23 23 H 1.48502 * 109.47030 * 25.02420 * 21 19 17 24 24 H 1.48496 * 109.47015 * 145.02616 * 21 19 17 25 25 C 1.38243 * 119.94671 * 34.18964 * 12 11 9 26 26 C 1.47023 * 108.70552 * 335.55901 * 8 7 6 27 27 H 1.08997 * 109.47026 * 181.69315 * 1 2 3 28 28 H 1.08997 * 109.46702 * 301.69139 * 1 2 3 29 29 H 1.08993 * 109.47032 * 61.68679 * 1 2 3 30 30 H 0.96996 * 119.99975 * 359.97438 * 4 3 2 31 31 H 0.96992 * 119.99677 * 180.02562 * 4 3 2 32 32 H 1.09004 * 110.99869 * 200.93278 * 6 2 1 33 33 H 1.08992 * 111.00356 * 324.74793 * 6 2 1 34 34 H 1.09004 * 110.49324 * 278.45828 * 7 6 2 35 35 H 1.08992 * 110.34524 * 156.05698 * 7 6 2 36 36 H 0.97001 * 120.00004 * 5.09032 * 11 9 8 37 37 H 1.08000 * 119.78574 * 0.02562 * 13 12 11 38 38 H 1.07997 * 119.84196 * 180.02562 * 14 13 12 39 39 H 1.07995 * 120.06322 * 179.97438 * 15 14 13 40 40 H 0.96994 * 119.99564 * 180.02562 * 20 19 17 41 41 H 1.08004 * 120.15890 * 0.02562 * 25 12 11 42 42 H 1.08998 * 109.88140 * 120.70406 * 26 8 7 43 43 H 1.09002 * 109.87562 * 241.86724 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0613 1.4102 0.0000 4 7 1.7808 2.2360 -1.0277 5 8 2.7413 1.8021 0.9247 6 6 2.0789 -0.7975 1.2125 7 6 2.0074 -2.2537 0.6824 8 7 2.3715 -2.1520 -0.7426 9 6 2.8849 -3.1454 -1.4949 10 8 3.1436 -2.9491 -2.6666 11 7 3.1114 -4.3564 -0.9486 12 6 3.7422 -5.3556 -1.6985 13 6 3.3901 -6.6905 -1.5139 14 6 4.0075 -7.6872 -2.2510 15 6 4.9779 -7.3690 -3.1745 16 6 5.3445 -6.0245 -3.3714 17 6 6.3406 -5.6899 -4.3177 18 1 7.1345 -6.3887 -4.5359 19 6 6.2977 -4.4532 -4.9712 20 7 5.2138 -3.7225 -4.9179 21 14 7.7881 -3.8458 -5.9195 22 1 8.6008 -2.9586 -5.0490 23 1 8.6093 -5.0068 -6.3474 24 1 7.3390 -3.0893 -7.1157 25 6 4.7181 -5.0166 -2.6171 26 6 2.0760 -0.7892 -1.2086 27 1 -0.3633 -1.0272 0.0304 28 1 -0.3632 0.5399 0.8744 29 1 -0.3633 0.4874 -0.9047 30 1 1.2373 1.9224 -1.7674 31 1 2.1231 3.1435 -1.0279 32 1 3.1061 -0.5098 1.4366 33 1 1.4399 -0.6692 2.0861 34 1 0.9973 -2.6493 0.7885 35 1 2.7207 -2.8852 1.2120 36 1 2.8372 -4.5356 -0.0355 37 1 2.6300 -6.9499 -0.7919 38 1 3.7268 -8.7191 -2.1004 39 1 5.4569 -8.1496 -3.7467 40 1 5.1840 -2.8655 -5.3712 41 1 4.9954 -3.9822 -2.7574 42 1 2.9868 -0.3182 -1.5781 43 1 1.3262 -0.8223 -1.9991 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365853738.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:08 Heat of formation + Delta-G solvation = -65.464055 kcal Electronic energy + Delta-G solvation = -26667.155729 eV Core-core repulsion = 22903.856931 eV Total energy + Delta-G solvation = -3763.298798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.90577 -40.85208 -39.25775 -38.14183 -36.00134 -35.06732 -34.81174 -33.53950 -31.41938 -30.46073 -30.02021 -27.66217 -27.13162 -25.21749 -23.54218 -23.12189 -22.42870 -20.72686 -20.39784 -19.74384 -18.97514 -18.01590 -17.62305 -17.54020 -17.03109 -16.63044 -16.44745 -16.03793 -15.93395 -15.50524 -15.04127 -14.93008 -14.60045 -14.44752 -14.06446 -13.92258 -13.71953 -13.42859 -13.34360 -13.07696 -12.91575 -12.84590 -12.66137 -12.60612 -12.21543 -12.07417 -11.88217 -11.79925 -11.50642 -11.14052 -11.01812 -10.85872 -10.72971 -10.71691 -9.68104 -9.22038 -8.70155 -8.38986 -6.29149 0.93759 1.14120 1.34962 1.40755 1.48410 1.50190 1.66552 2.22233 2.25937 2.51195 2.85488 3.04711 3.23684 3.46110 3.76774 3.80063 4.03610 4.11530 4.24105 4.51931 4.53057 4.56442 4.70267 4.73193 4.81717 4.88489 4.91906 4.94234 5.08683 5.12064 5.24065 5.28497 5.29939 5.32989 5.45706 5.81529 5.84355 5.92618 6.03956 6.19480 6.21292 6.35057 6.48225 6.74175 7.00258 7.05595 7.10391 7.24322 7.69751 8.44818 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.013898 B = 0.003886 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.199175 B = 7203.642728 C = 8763.918569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C 0.534 3.466 4 N -0.835 5.835 5 O -0.583 6.583 6 C -0.102 4.102 7 C 0.094 3.906 8 N -0.635 5.635 9 C 0.699 3.301 10 O -0.586 6.586 11 N -0.670 5.670 12 C 0.160 3.840 13 C -0.252 4.252 14 C -0.079 4.079 15 C -0.254 4.254 16 C 0.088 3.912 17 C -0.509 4.509 18 H 0.075 0.925 19 C 0.028 3.972 20 N -0.802 5.802 21 Si 0.975 3.025 22 H -0.269 1.269 23 H -0.254 1.254 24 H -0.270 1.270 25 C -0.181 4.181 26 C 0.143 3.857 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.416 0.584 31 H 0.409 0.591 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.412 0.588 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.098 0.902 40 H 0.278 0.722 41 H 0.102 0.898 42 H 0.041 0.959 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.715 9.737 11.312 19.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.090 4.090 3 C 0.318 3.682 4 N -0.398 5.398 5 O -0.462 6.462 6 C -0.141 4.141 7 C -0.028 4.028 8 N -0.375 5.375 9 C 0.401 3.599 10 O -0.462 6.462 11 N -0.319 5.319 12 C 0.066 3.934 13 C -0.273 4.273 14 C -0.097 4.097 15 C -0.274 4.274 16 C 0.085 3.915 17 C -0.539 4.539 18 H 0.093 0.907 19 C -0.188 4.188 20 N -0.426 5.426 21 Si 0.797 3.203 22 H -0.194 1.194 23 H -0.177 1.177 24 H -0.195 1.195 25 C -0.203 4.203 26 C 0.019 3.981 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.247 0.753 31 H 0.241 0.759 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.118 0.882 35 H 0.101 0.899 36 H 0.250 0.750 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.116 0.884 40 H 0.088 0.912 41 H 0.120 0.880 42 H 0.059 0.941 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -12.224 10.172 10.981 19.326 hybrid contribution 0.715 0.585 -0.755 1.193 sum -11.509 10.758 10.226 18.782 Atomic orbital electron populations 1.21849 0.88313 1.04524 1.04125 1.21825 0.99747 0.90788 0.96602 1.20386 0.78524 0.87572 0.81718 1.43758 1.55825 1.16756 1.23469 1.90735 1.40277 1.77746 1.37455 1.22749 1.02614 0.91842 0.96873 1.22695 1.02316 0.98436 0.79343 1.47475 1.67503 1.10362 1.12152 1.15822 0.78915 0.80716 0.84438 1.91144 1.57350 1.81653 1.16020 1.42312 1.62403 1.10296 1.16847 1.17538 0.93185 0.87710 0.94997 1.20457 1.07664 0.90411 1.08811 1.20734 0.95455 0.98581 0.94958 1.21244 1.04733 0.95694 1.05715 1.17866 0.91459 0.91709 0.90454 1.19751 1.10765 1.02006 1.21382 0.90701 1.26768 0.99080 0.95995 0.96984 1.70042 1.27294 1.10908 1.34351 0.85303 0.78272 0.78972 0.77792 1.19413 1.17710 1.19529 1.21192 0.99938 0.99703 0.99485 1.21723 0.99691 0.80744 0.95976 0.90126 0.90221 0.90177 0.75279 0.75898 0.91671 0.86451 0.88178 0.89911 0.75024 0.85235 0.85037 0.88384 0.91168 0.88033 0.94050 0.90043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 8.35 71.98 0.60 -0.73 16 2 C -0.09 -1.48 0.75 -51.74 -0.04 -1.52 16 3 C 0.53 10.87 6.66 87.65 0.58 11.46 16 4 N -0.83 -10.86 8.76 -173.52 -1.52 -12.38 16 5 O -0.58 -16.85 16.62 -3.04 -0.05 -16.90 16 6 C -0.10 -1.81 5.65 32.07 0.18 -1.63 16 7 C 0.09 1.74 6.23 86.93 0.54 2.28 16 8 N -0.64 -18.44 3.33 -829.29 -2.76 -21.20 16 9 C 0.70 28.61 8.22 179.05 1.47 30.08 16 10 O -0.59 -30.90 14.40 -3.98 -0.06 -30.95 16 11 N -0.67 -25.65 5.29 -317.33 -1.68 -27.33 16 12 C 0.16 7.58 6.26 38.10 0.24 7.82 16 13 C -0.25 -10.60 9.97 22.58 0.23 -10.37 16 14 C -0.08 -3.41 10.02 22.20 0.22 -3.19 16 15 C -0.25 -12.92 9.79 22.75 0.22 -12.70 16 16 C 0.09 5.09 5.52 -21.31 -0.12 4.97 16 17 C -0.51 -29.68 9.04 23.46 0.21 -29.47 16 18 H 0.07 4.17 7.88 -2.91 -0.02 4.15 16 19 C 0.03 1.54 5.18 85.25 0.44 1.98 16 20 N -0.80 -47.50 11.09 21.82 0.24 -47.26 16 21 Si 0.98 42.34 29.58 68.60 2.03 44.37 16 22 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 23 H -0.25 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 C -0.18 -10.33 7.25 22.85 0.17 -10.16 16 26 C 0.14 3.55 5.98 86.73 0.52 4.06 16 27 H 0.08 0.78 7.42 -2.39 -0.02 0.76 16 28 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.08 0.59 7.83 -2.39 -0.02 0.57 16 30 H 0.42 3.34 8.49 -92.71 -0.79 2.56 16 31 H 0.41 4.52 8.93 -92.71 -0.83 3.69 16 32 H 0.06 1.51 7.50 -2.38 -0.02 1.50 16 33 H 0.12 1.43 8.04 -2.39 -0.02 1.41 16 34 H 0.10 1.31 7.69 -2.38 -0.02 1.29 16 35 H 0.08 1.46 7.37 -2.39 -0.02 1.44 16 36 H 0.41 11.76 7.35 -92.71 -0.68 11.08 16 37 H 0.13 4.35 8.06 -2.91 -0.02 4.32 16 38 H 0.13 4.58 8.06 -2.91 -0.02 4.55 16 39 H 0.10 4.71 8.06 -2.91 -0.02 4.68 16 40 H 0.28 15.46 8.30 -92.71 -0.77 14.70 16 41 H 0.10 6.40 4.83 -2.91 -0.01 6.39 16 42 H 0.04 1.25 7.81 -2.39 -0.02 1.23 16 43 H 0.08 1.90 7.84 -2.39 -0.02 1.88 16 Total: -1.00 -83.41 354.84 0.46 -82.95 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: -1.22 Total: 35.82 kcal Atomic # 6 Polarization: -12.59 SS G_CDS: 5.47 Total: -7.12 kcal Atomic # 7 Polarization: -102.44 SS G_CDS: -5.71 Total: -108.16 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -0.11 Total: -47.86 kcal Atomic # 14 Polarization: 42.34 SS G_CDS: 2.03 Total: 44.37 kcal Total: -83.41 0.46 -82.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365853738.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.484 kcal (2) G-P(sol) polarization free energy of solvation -83.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds