Wall clock time and date at job start Tue Mar 31 2020 11:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.47533 * 2 1 4 4 C 1.53085 * 109.48042 * 120.02293 * 2 1 3 5 5 C 1.53183 * 109.16289 * 62.37691 * 4 2 1 6 6 H 1.09001 * 109.54604 * 297.11225 * 5 4 2 7 7 N 1.46504 * 109.54484 * 176.84841 * 5 4 2 8 8 S 1.65595 * 120.00100 * 144.99967 * 7 5 4 9 9 O 1.42104 * 104.27762 * 181.07140 * 8 7 5 10 10 O 1.42105 * 104.27847 * 308.92723 * 8 7 5 11 11 C 1.81402 * 104.44972 * 64.99979 * 8 7 5 12 12 C 1.53002 * 109.47081 * 172.97978 * 11 8 7 13 13 C 1.50698 * 115.54954 * 39.93674 * 12 11 8 14 14 H 1.08004 * 120.00195 * 271.00327 * 13 12 11 15 15 C 1.37873 * 119.99830 * 91.01486 * 13 12 11 16 16 N 1.31514 * 120.00037 * 174.63248 * 15 13 12 17 17 Si 1.86794 * 120.00225 * 354.62596 * 15 13 12 18 18 H 1.48501 * 109.47245 * 92.71938 * 17 15 13 19 19 H 1.48493 * 109.47499 * 212.72287 * 17 15 13 20 20 H 1.48507 * 109.47146 * 332.71889 * 17 15 13 21 21 C 1.53001 * 117.49545 * 254.23242 * 12 11 8 22 22 C 1.52997 * 117.49748 * 185.60987 * 12 11 8 23 23 C 1.53170 * 109.03646 * 56.98045 * 5 4 2 24 24 C 1.53099 * 109.16242 * 303.01717 * 23 5 4 25 25 O 1.42902 * 109.47804 * 239.97828 * 2 1 3 26 26 H 1.09003 * 109.47236 * 60.00463 * 1 2 3 27 27 H 1.08993 * 109.47402 * 299.99321 * 1 2 3 28 28 H 1.09008 * 109.46992 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47193 * 60.00369 * 3 2 1 30 30 H 1.09003 * 109.46616 * 179.97438 * 3 2 1 31 31 H 1.08992 * 109.47637 * 299.99945 * 3 2 1 32 32 H 1.08998 * 109.52414 * 182.27844 * 4 2 1 33 33 H 1.08996 * 109.52665 * 302.47487 * 4 2 1 34 34 H 0.96996 * 119.99547 * 324.99960 * 7 5 4 35 35 H 1.09001 * 109.47091 * 292.97951 * 11 8 7 36 36 H 1.08998 * 109.47307 * 52.97866 * 11 8 7 37 37 H 0.97001 * 120.00095 * 179.97438 * 16 15 13 38 38 H 1.09003 * 117.50274 * 359.97438 * 21 12 11 39 39 H 1.08995 * 117.49912 * 145.01990 * 21 12 11 40 40 H 1.08999 * 117.50121 * 214.97680 * 22 12 11 41 41 H 1.09000 * 117.49826 * 0.02562 * 22 12 11 42 42 H 1.09002 * 109.52767 * 62.92570 * 23 5 4 43 43 H 1.09000 * 109.52581 * 183.11790 * 23 5 4 44 44 H 1.09007 * 109.47976 * 177.59331 * 24 23 5 45 45 H 1.08990 * 109.48287 * 297.62585 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0406 -0.7221 1.2496 5 6 1.5758 -2.1812 1.2123 6 1 0.4868 -2.2179 1.2409 7 7 2.1225 -2.8994 2.3662 8 16 1.2323 -4.0876 3.0997 9 8 2.0543 -4.5306 4.1709 10 8 -0.0281 -3.4795 3.3465 11 6 1.0785 -5.3820 1.8381 12 6 0.4202 -6.6184 2.4536 13 6 -0.7103 -6.3439 3.4116 14 1 -0.5051 -6.2001 4.4621 15 6 -2.0066 -6.2765 2.9469 16 7 -3.0030 -6.1425 3.7948 17 14 -2.3478 -6.3754 1.1130 18 1 -2.6097 -7.7870 0.7336 19 1 -3.5352 -5.5462 0.7850 20 1 -1.1697 -5.8714 0.3624 21 6 1.3154 -7.8248 2.7437 22 6 0.3196 -7.8725 1.5829 23 6 2.0765 -2.8322 -0.0806 24 6 1.5645 -2.0285 -1.2789 25 8 2.0066 -0.6741 -1.1665 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 0.5137 0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6769 1.9563 0.8900 30 1 3.1302 1.4423 0.0005 31 1 1.6769 1.9563 -0.8899 32 1 3.1298 -0.6873 1.2710 33 1 1.6421 -0.2356 2.1398 34 1 3.0059 -2.6789 2.7006 35 1 0.4653 -5.0158 1.0147 36 1 2.0682 -5.6451 1.4649 37 1 -3.9150 -6.0947 3.4678 38 1 2.3732 -7.7378 2.4956 39 1 1.0868 -8.4201 3.6276 40 1 -0.5640 -8.4992 1.7033 41 1 0.7229 -7.8168 0.5718 42 1 3.1665 -2.8400 -0.0862 43 1 1.7038 -3.8546 -0.1418 44 1 1.9531 -2.4624 -2.2004 45 1 0.4751 -2.0551 -1.2957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001414241971.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:36 Heat of formation + Delta-G solvation = -127.961320 kcal Electronic energy + Delta-G solvation = -26806.232552 eV Core-core repulsion = 23143.374870 eV Total energy + Delta-G solvation = -3662.857683 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.06482 -38.84494 -37.96587 -36.85840 -36.62976 -34.53299 -34.32447 -31.91133 -30.17118 -28.81513 -28.20971 -27.61072 -24.82573 -23.35279 -22.82132 -21.40618 -20.57497 -20.00665 -18.74251 -18.39775 -17.61063 -17.18613 -17.03850 -16.74241 -16.37930 -15.80986 -15.74313 -15.41020 -15.27922 -14.88289 -14.76225 -14.55823 -14.22639 -13.99923 -13.41180 -13.18821 -13.11798 -12.97552 -12.94507 -12.89333 -12.78130 -12.64252 -12.57411 -12.38517 -12.26378 -12.14369 -12.05563 -12.02511 -11.81564 -11.68602 -11.04020 -10.94113 -10.73414 -10.49140 -10.46435 -10.17352 -8.36627 -6.52891 -0.54530 1.30999 1.33804 1.45690 2.04020 2.32380 2.83249 2.91301 2.99927 3.14201 3.43575 3.58035 3.74482 3.78933 3.85540 4.01995 4.05515 4.12099 4.20467 4.30197 4.35569 4.44562 4.46203 4.57044 4.61644 4.71918 4.76548 4.83112 4.85728 4.87314 4.90985 4.94442 5.02107 5.10119 5.11889 5.18245 5.22764 5.35797 5.39753 5.46798 5.60972 6.13582 6.15168 6.33199 6.61150 7.24201 8.80105 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016533 B = 0.005068 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1693.206580 B = 5524.070632 C = 5884.103477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.111 3.889 3 C -0.134 4.134 4 C -0.143 4.143 5 C 0.134 3.866 6 H 0.077 0.923 7 N -1.110 6.110 8 S 2.623 3.377 9 O -1.005 7.005 10 O -0.991 6.991 11 C -0.572 4.572 12 C -0.030 4.030 13 C -0.536 4.536 14 H 0.026 0.974 15 C 0.038 3.962 16 N -0.934 5.934 17 Si 0.929 3.071 18 H -0.259 1.259 19 H -0.295 1.295 20 H -0.212 1.212 21 C -0.167 4.167 22 C -0.171 4.171 23 C -0.181 4.181 24 C 0.055 3.945 25 O -0.381 6.381 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.423 0.577 35 H 0.137 0.863 36 H 0.160 0.840 37 H 0.269 0.731 38 H 0.116 0.884 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.086 0.914 44 H 0.119 0.881 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.974 10.749 -15.167 22.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.071 3.929 3 C -0.191 4.191 4 C -0.182 4.182 5 C 0.027 3.973 6 H 0.095 0.905 7 N -0.869 5.869 8 S 2.720 3.280 9 O -0.995 6.995 10 O -0.980 6.980 11 C -0.705 4.705 12 C -0.033 4.033 13 C -0.574 4.574 14 H 0.044 0.956 15 C -0.163 4.163 16 N -0.571 5.571 17 Si 0.752 3.248 18 H -0.184 1.184 19 H -0.222 1.222 20 H -0.135 1.135 21 C -0.204 4.204 22 C -0.209 4.209 23 C -0.220 4.220 24 C -0.022 4.022 25 O -0.300 6.300 26 H 0.092 0.908 27 H 0.091 0.909 28 H 0.073 0.927 29 H 0.100 0.900 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.110 0.890 33 H 0.098 0.902 34 H 0.259 0.741 35 H 0.155 0.845 36 H 0.178 0.822 37 H 0.078 0.922 38 H 0.134 0.866 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.137 0.863 42 H 0.114 0.886 43 H 0.104 0.896 44 H 0.136 0.864 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 12.398 10.885 -14.394 21.894 hybrid contribution -0.702 -0.549 0.022 0.892 sum 11.696 10.335 -14.371 21.217 Atomic orbital electron populations 1.22569 0.95844 1.02678 1.03618 1.21566 0.93134 0.93741 0.84418 1.21756 1.02143 0.91900 1.03330 1.22490 1.03090 0.93347 0.99256 1.21080 0.98190 0.93160 0.84882 0.90510 1.55624 1.32576 1.53218 1.45530 1.04278 0.72701 0.75178 0.75801 1.93445 1.69481 1.83190 1.53372 1.93511 1.44900 1.75358 1.84262 1.30222 1.10247 1.13773 1.16223 1.18699 0.98111 0.86509 0.99945 1.20512 0.91287 1.52246 0.93323 0.95552 1.25955 0.95319 0.91793 1.03263 1.70052 1.00173 1.49230 1.37637 0.86051 0.79454 0.79326 0.80002 1.18365 1.22204 1.13462 1.23076 0.96479 1.01477 0.99369 1.23050 1.01273 1.00449 0.96158 1.22921 1.04036 1.00865 0.94178 1.22721 0.99340 0.81593 0.98570 1.87951 1.73799 1.25008 1.43260 0.90763 0.90916 0.92727 0.90015 0.91330 0.91315 0.88951 0.90240 0.74143 0.84499 0.82239 0.92183 0.86574 0.90566 0.90509 0.86257 0.88559 0.89552 0.86358 0.92667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.72 7.93 71.98 0.57 -3.14 16 2 C 0.11 2.06 1.11 -10.76 -0.01 2.05 16 3 C -0.13 -1.93 8.85 71.98 0.64 -1.29 16 4 C -0.14 -2.83 4.46 30.68 0.14 -2.69 16 5 C 0.13 3.22 2.47 45.11 0.11 3.33 16 6 H 0.08 2.17 5.97 -2.39 -0.01 2.16 16 7 N -1.11 -30.33 5.37 -168.89 -0.91 -31.23 16 8 S 2.62 106.04 4.59 -56.49 -0.26 105.78 16 9 O -1.00 -46.57 18.08 -127.65 -2.31 -48.88 16 10 O -0.99 -50.38 16.59 -127.65 -2.12 -52.50 16 11 C -0.57 -19.90 5.05 71.98 0.36 -19.53 16 12 C -0.03 -1.32 1.11 -52.93 -0.06 -1.38 16 13 C -0.54 -30.90 7.53 25.60 0.19 -30.70 16 14 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 15 C 0.04 2.20 5.46 84.65 0.46 2.66 16 16 N -0.93 -59.87 13.96 21.45 0.30 -59.57 16 17 Si 0.93 42.22 25.01 68.60 1.72 43.94 16 18 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 19 H -0.30 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.21 -7.97 5.43 99.48 0.54 -7.43 16 21 C -0.17 -6.27 9.88 30.60 0.30 -5.97 16 22 C -0.17 -6.27 7.58 30.59 0.23 -6.04 16 23 C -0.18 -3.36 5.70 30.68 0.17 -3.19 16 24 C 0.05 0.96 6.52 72.02 0.47 1.43 16 25 O -0.38 -7.49 10.24 -148.98 -1.53 -9.02 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.05 1.19 4.98 -2.38 -0.01 1.18 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.07 0.93 8.14 -2.39 -0.02 0.92 16 32 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 33 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.42 9.37 8.80 -96.75 -0.85 8.52 16 35 H 0.14 4.31 5.56 -2.39 -0.01 4.30 16 36 H 0.16 3.88 7.95 -2.39 -0.02 3.86 16 37 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 38 H 0.12 3.43 8.08 -2.39 -0.02 3.41 16 39 H 0.08 3.09 8.14 -2.39 -0.02 3.07 16 40 H 0.08 3.06 7.09 -2.39 -0.02 3.05 16 41 H 0.12 3.37 8.14 -2.39 -0.02 3.35 16 42 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.09 1.51 6.15 -2.39 -0.01 1.50 16 44 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 45 H 0.06 0.99 6.34 -2.39 -0.02 0.98 16 Total: -1.00 -81.11 353.97 -1.55 -82.66 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: -0.03 Total: 33.30 kcal Atomic # 6 Polarization: -68.06 SS G_CDS: 3.58 Total: -64.48 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -0.61 Total: -90.80 kcal Atomic # 8 Polarization: -104.45 SS G_CDS: -5.95 Total: -110.40 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.72 Total: 43.94 kcal Atomic # 16 Polarization: 106.04 SS G_CDS: -0.26 Total: 105.78 kcal Total: -81.11 -1.55 -82.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001414241971.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.304 kcal (2) G-P(sol) polarization free energy of solvation -81.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds