Wall clock time and date at job start Tue Mar 31 2020 11:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38752 * 119.84668 * 2 1 4 4 C 1.37773 * 120.63813 * 179.56940 * 3 2 1 5 5 C 1.39128 * 119.92276 * 0.68094 * 4 3 2 6 6 N 1.37958 * 133.18836 * 179.22097 * 5 4 3 7 7 H 0.97001 * 124.78802 * 359.97438 * 6 5 4 8 8 C 1.35471 * 110.42324 * 180.02562 * 6 5 4 9 9 C 1.36362 * 109.77398 * 359.97438 * 8 6 5 10 10 C 1.46910 * 126.77539 * 180.02562 * 9 8 6 11 11 O 1.21664 * 120.00566 * 180.29821 * 10 9 8 12 12 N 1.34784 * 119.99488 * 0.02608 * 10 9 8 13 13 C 1.46499 * 119.99971 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47267 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.47124 * 59.99892 * 14 13 12 16 16 O 1.42901 * 109.46954 * 300.00131 * 14 13 12 17 17 C 1.53005 * 109.47277 * 180.02562 * 14 13 12 18 18 N 1.46504 * 109.47028 * 185.00044 * 17 14 13 19 19 C 1.36935 * 119.99755 * 179.97438 * 18 17 14 20 20 H 1.08004 * 120.00148 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00179 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99735 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00314 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47164 * 89.99789 * 23 21 19 25 25 H 1.48504 * 109.47135 * 209.99891 * 23 21 19 26 26 H 1.48503 * 109.47108 * 329.99888 * 23 21 19 27 27 C 1.40392 * 119.36011 * 359.52051 * 5 4 3 28 28 C 1.37754 * 119.85452 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47433 * 269.97511 * 1 2 3 30 30 H 1.08998 * 109.47382 * 29.97841 * 1 2 3 31 31 H 1.09006 * 109.46954 * 149.97806 * 1 2 3 32 32 H 1.08006 * 119.68416 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.04004 * 179.97438 * 4 3 2 34 34 H 1.08009 * 125.11456 * 180.02562 * 8 6 5 35 35 H 0.96999 * 120.00044 * 0.02562 * 12 10 9 36 36 H 1.09004 * 109.47024 * 300.00310 * 13 12 10 37 37 H 1.09005 * 109.47136 * 59.99926 * 13 12 10 38 38 H 0.96700 * 113.99645 * 299.99591 * 16 14 13 39 39 H 1.09005 * 109.46646 * 304.99806 * 17 14 13 40 40 H 1.08996 * 109.47004 * 64.99932 * 17 14 13 41 41 H 0.96991 * 119.99787 * 359.97438 * 18 17 14 42 42 H 0.96992 * 120.00481 * 180.02562 * 22 21 19 43 43 H 1.08002 * 120.16299 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.2035 0.0000 4 6 3.5751 1.2225 0.0089 5 6 4.2858 0.0265 0.0037 6 7 5.6328 -0.2714 -0.0039 7 1 6.3452 0.3869 -0.0072 8 6 5.8202 -1.6131 -0.0070 9 6 4.6132 -2.2476 -0.0012 10 6 4.3821 -3.6984 -0.0016 11 8 3.2460 -4.1335 -0.0014 12 7 5.4289 -4.5474 -0.0078 13 6 5.1987 -5.9942 -0.0077 14 6 6.5430 -6.7246 -0.0147 15 1 7.1119 -6.4471 0.8727 16 8 7.2774 -6.3592 -1.1848 17 6 6.3024 -8.2356 -0.0152 18 7 7.5851 -8.9343 0.0984 19 6 7.6197 -10.3030 0.1191 20 1 6.7014 -10.8675 0.0512 21 6 8.8350 -10.9651 0.2263 22 7 9.9542 -10.2772 0.3075 23 14 8.8823 -12.8323 0.2538 24 1 9.0082 -13.3447 -1.1342 25 1 10.0463 -13.2862 1.0566 26 1 7.6300 -13.3502 0.8610 27 6 3.5855 -1.1903 -0.0004 28 6 2.1927 -1.1947 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6499 2.1344 -0.0004 33 1 4.1028 2.1648 0.0084 34 1 6.7812 -2.1062 -0.0125 35 1 6.3348 -4.2005 -0.0116 36 1 4.6388 -6.2729 0.8851 37 1 4.6294 -6.2716 -0.8949 38 1 6.8300 -6.5770 -2.0140 39 1 5.6671 -8.5026 0.8293 40 1 5.8121 -8.5251 -0.9446 41 1 8.4098 -8.4273 0.1590 42 1 10.8035 -10.7397 0.3820 43 1 1.6530 -2.1302 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497122085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:01 Heat of formation + Delta-G solvation = -25.982837 kcal Electronic energy + Delta-G solvation = -24957.957529 eV Core-core repulsion = 21196.370765 eV Total energy + Delta-G solvation = -3761.586764 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.70927 -39.32003 -37.67975 -37.48258 -34.31705 -33.96125 -32.45643 -31.67161 -31.30445 -29.81928 -28.50819 -26.69294 -25.46936 -23.31226 -22.94250 -22.16989 -21.39412 -21.25691 -19.62271 -18.50807 -17.17943 -16.76790 -16.66757 -16.02179 -15.92600 -15.40530 -15.14090 -14.89263 -14.50091 -14.46318 -14.26072 -13.99933 -13.71151 -13.61749 -13.38113 -12.97351 -12.93223 -12.62020 -12.37754 -12.29518 -11.84537 -11.82541 -11.50493 -11.20125 -10.96597 -10.81976 -10.60786 -10.18316 -10.00336 -9.96149 -9.80187 -9.48515 -9.03630 -8.90266 -8.46338 -8.00101 -6.94134 -5.76655 -3.06124 0.72893 1.26471 1.81441 2.65678 3.21026 3.30847 3.43705 3.48831 3.50533 3.71420 4.33221 4.44824 4.54996 4.66270 4.70056 4.74971 4.86320 4.91681 5.04300 5.20608 5.27635 5.33216 5.37320 5.42632 5.53026 5.55943 5.64761 5.76049 5.84532 5.89721 5.98408 6.07308 6.20296 6.26091 6.39244 6.44602 6.49443 6.53151 6.68534 6.82764 7.03729 7.58546 7.68515 7.93695 8.32517 8.41617 9.53251 10.09834 10.45566 11.45767 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033933 B = 0.002021 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.964036 B =13853.408494 C =14552.704716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.110 4.110 3 C -0.099 4.099 4 C -0.124 4.124 5 C 0.079 3.921 6 N -0.579 5.579 7 H 0.420 0.580 8 C 0.110 3.890 9 C -0.226 4.226 10 C 0.587 3.413 11 O -0.546 6.546 12 N -0.721 5.721 13 C 0.092 3.908 14 C 0.089 3.911 15 H 0.105 0.895 16 O -0.554 6.554 17 C 0.127 3.873 18 N -0.726 5.726 19 C -0.243 4.243 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.908 3.092 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C -0.058 4.058 28 C -0.063 4.063 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.181 0.819 35 H 0.401 0.599 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.374 0.626 39 H 0.029 0.971 40 H 0.024 0.976 41 H 0.388 0.612 42 H 0.255 0.745 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.552 27.222 -1.094 29.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.111 4.111 3 C -0.118 4.118 4 C -0.145 4.145 5 C -0.026 4.026 6 N -0.180 5.180 7 H 0.257 0.743 8 C -0.022 4.022 9 C -0.237 4.237 10 C 0.375 3.625 11 O -0.424 6.424 12 N -0.372 5.372 13 C -0.032 4.032 14 C 0.029 3.971 15 H 0.122 0.878 16 O -0.359 6.359 17 C -0.002 4.002 18 N -0.371 5.371 19 C -0.374 4.374 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.579 5.579 23 Si 0.739 3.261 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.063 4.063 28 C -0.082 4.082 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.198 0.802 35 H 0.236 0.764 36 H 0.096 0.904 37 H 0.090 0.910 38 H 0.221 0.779 39 H 0.047 0.953 40 H 0.041 0.959 41 H 0.222 0.778 42 H 0.065 0.935 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -12.901 26.995 -0.640 29.926 hybrid contribution 0.920 -0.666 -0.327 1.182 sum -11.981 26.330 -0.967 28.944 Atomic orbital electron populations 1.20728 0.90995 1.02673 1.02224 1.19739 0.96158 0.92589 1.02627 1.20701 0.92829 0.97636 1.00669 1.19978 0.93818 0.94620 1.06068 1.18251 0.83023 0.95416 1.05929 1.41517 1.06326 1.06869 1.63300 0.74255 1.22169 0.99223 0.82695 0.98150 1.20065 0.92143 0.92538 1.18946 1.17211 0.84708 0.84560 0.76024 1.90765 1.22329 1.78609 1.50715 1.45727 1.09104 1.06585 1.75810 1.22071 0.98541 0.79386 1.03244 1.22403 0.90539 0.94675 0.89459 0.87765 1.86558 1.48909 1.84692 1.15728 1.21209 0.90963 0.89200 0.98830 1.42236 1.02462 1.03628 1.88748 1.19227 0.92822 0.82660 1.42676 0.91182 1.24763 0.95375 0.97961 1.02852 1.69673 0.97024 1.34137 1.57065 0.86170 0.76968 0.85466 0.77458 1.21701 1.21751 1.20735 1.18718 0.93014 0.90564 1.03955 1.20580 0.91791 0.98218 0.97602 0.91359 0.91750 0.91468 0.85654 0.86088 0.80184 0.76449 0.90416 0.91039 0.77941 0.95312 0.95866 0.77759 0.93498 0.84848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 10.00 36.01 0.36 -0.43 16 2 C -0.11 -1.06 5.88 -104.61 -0.62 -1.68 16 3 C -0.10 -0.82 9.66 -39.56 -0.38 -1.20 16 4 C -0.12 -1.01 10.07 -39.42 -0.40 -1.41 16 5 C 0.08 0.76 7.26 -83.97 -0.61 0.15 16 6 N -0.58 -4.05 5.99 -10.48 -0.06 -4.11 16 7 H 0.42 1.45 8.96 -40.82 -0.37 1.08 16 8 C 0.11 0.88 11.33 -16.62 -0.19 0.69 16 9 C -0.23 -2.68 6.27 -103.31 -0.65 -3.33 16 10 C 0.59 8.20 7.80 -12.75 -0.10 8.10 16 11 O -0.55 -9.55 16.16 5.22 0.08 -9.46 16 12 N -0.72 -8.64 5.44 -61.55 -0.33 -8.98 16 13 C 0.09 1.22 5.34 -4.05 -0.02 1.20 16 14 C 0.09 1.35 3.09 -26.73 -0.08 1.26 16 15 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 16 O -0.55 -8.47 13.03 -35.23 -0.46 -8.92 16 17 C 0.13 2.44 5.90 -4.04 -0.02 2.42 16 18 N -0.73 -18.31 5.55 -59.90 -0.33 -18.64 16 19 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 20 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 21 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.31 13.06 55.49 0.72 -27.59 16 23 Si 0.91 22.48 29.55 -169.99 -5.02 17.46 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 27 C -0.06 -0.71 6.27 -104.95 -0.66 -1.37 16 28 C -0.06 -0.77 9.49 -39.37 -0.37 -1.14 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.36 8.08 -51.93 -0.42 -0.06 16 31 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 33 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 34 H 0.18 0.82 7.38 -52.48 -0.39 0.44 16 35 H 0.40 3.94 7.23 -40.82 -0.30 3.65 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.37 4.79 9.04 45.56 0.41 5.20 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.39 10.44 7.67 -40.82 -0.31 10.12 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.13 1.74 7.45 -52.49 -0.39 1.35 16 LS Contribution 368.93 15.07 5.56 5.56 Total: -1.00 -36.27 368.93 -8.94 -45.20 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: -5.11 Total: 13.66 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: -3.98 Total: -4.18 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -0.01 Total: -59.32 kcal Atomic # 8 Polarization: -18.01 SS G_CDS: -0.37 Total: -18.39 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.27 -8.94 -45.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497122085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.219 kcal (2) G-P(sol) polarization free energy of solvation -36.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds