Wall clock time and date at job start Tue Mar 31 2020 11:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38752 * 119.84668 * 2 1 4 4 C 1.37773 * 120.63813 * 179.56940 * 3 2 1 5 5 C 1.39128 * 119.92276 * 0.68094 * 4 3 2 6 6 N 1.37958 * 133.18836 * 179.22097 * 5 4 3 7 7 H 0.97001 * 124.78802 * 359.97438 * 6 5 4 8 8 C 1.35471 * 110.42324 * 180.02562 * 6 5 4 9 9 C 1.36362 * 109.77398 * 359.97438 * 8 6 5 10 10 C 1.46910 * 126.77539 * 180.02562 * 9 8 6 11 11 O 1.21664 * 120.00566 * 180.29821 * 10 9 8 12 12 N 1.34784 * 119.99488 * 0.02608 * 10 9 8 13 13 C 1.46499 * 119.99971 * 179.97438 * 12 10 9 14 14 C 1.52992 * 109.47267 * 180.02562 * 13 12 10 15 15 H 1.09005 * 109.47124 * 59.99892 * 14 13 12 16 16 O 1.42901 * 109.46954 * 300.00131 * 14 13 12 17 17 C 1.53005 * 109.47277 * 180.02562 * 14 13 12 18 18 N 1.46504 * 109.47028 * 185.00044 * 17 14 13 19 19 C 1.36935 * 119.99755 * 179.97438 * 18 17 14 20 20 H 1.08004 * 120.00148 * 0.02562 * 19 18 17 21 21 C 1.38812 * 120.00179 * 179.97438 * 19 18 17 22 22 N 1.31621 * 119.99735 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00314 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47164 * 89.99789 * 23 21 19 25 25 H 1.48504 * 109.47135 * 209.99891 * 23 21 19 26 26 H 1.48503 * 109.47108 * 329.99888 * 23 21 19 27 27 C 1.40392 * 119.36011 * 359.52051 * 5 4 3 28 28 C 1.37754 * 119.85452 * 180.02562 * 2 1 3 29 29 H 1.08995 * 109.47433 * 269.97511 * 1 2 3 30 30 H 1.08998 * 109.47382 * 29.97841 * 1 2 3 31 31 H 1.09006 * 109.46954 * 149.97806 * 1 2 3 32 32 H 1.08006 * 119.68416 * 359.97438 * 3 2 1 33 33 H 1.07998 * 120.04004 * 179.97438 * 4 3 2 34 34 H 1.08009 * 125.11456 * 180.02562 * 8 6 5 35 35 H 0.96999 * 120.00044 * 0.02562 * 12 10 9 36 36 H 1.09004 * 109.47024 * 300.00310 * 13 12 10 37 37 H 1.09005 * 109.47136 * 59.99926 * 13 12 10 38 38 H 0.96700 * 113.99645 * 299.99591 * 16 14 13 39 39 H 1.09005 * 109.46646 * 304.99806 * 17 14 13 40 40 H 1.08996 * 109.47004 * 64.99932 * 17 14 13 41 41 H 0.96991 * 119.99787 * 359.97438 * 18 17 14 42 42 H 0.96992 * 120.00481 * 180.02562 * 22 21 19 43 43 H 1.08002 * 120.16299 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.2035 0.0000 4 6 3.5751 1.2225 0.0089 5 6 4.2858 0.0265 0.0037 6 7 5.6328 -0.2714 -0.0039 7 1 6.3452 0.3869 -0.0072 8 6 5.8202 -1.6131 -0.0070 9 6 4.6132 -2.2476 -0.0012 10 6 4.3821 -3.6984 -0.0016 11 8 3.2460 -4.1335 -0.0014 12 7 5.4289 -4.5474 -0.0078 13 6 5.1987 -5.9942 -0.0077 14 6 6.5430 -6.7246 -0.0147 15 1 7.1119 -6.4471 0.8727 16 8 7.2774 -6.3592 -1.1848 17 6 6.3024 -8.2356 -0.0152 18 7 7.5851 -8.9343 0.0984 19 6 7.6197 -10.3030 0.1191 20 1 6.7014 -10.8675 0.0512 21 6 8.8350 -10.9651 0.2263 22 7 9.9542 -10.2772 0.3075 23 14 8.8823 -12.8323 0.2538 24 1 9.0082 -13.3447 -1.1342 25 1 10.0463 -13.2862 1.0566 26 1 7.6300 -13.3502 0.8610 27 6 3.5855 -1.1903 -0.0004 28 6 2.1927 -1.1947 -0.0005 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8901 -0.5135 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6499 2.1344 -0.0004 33 1 4.1028 2.1648 0.0084 34 1 6.7812 -2.1062 -0.0125 35 1 6.3348 -4.2005 -0.0116 36 1 4.6388 -6.2729 0.8851 37 1 4.6294 -6.2716 -0.8949 38 1 6.8300 -6.5770 -2.0140 39 1 5.6671 -8.5026 0.8293 40 1 5.8121 -8.5251 -0.9446 41 1 8.4098 -8.4273 0.1590 42 1 10.8035 -10.7397 0.3820 43 1 1.6530 -2.1302 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497122085.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:01 Heat of formation + Delta-G solvation = -54.588811 kcal Electronic energy + Delta-G solvation = -24959.197977 eV Core-core repulsion = 21196.370765 eV Total energy + Delta-G solvation = -3762.827212 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.41450 -40.40139 -38.81819 -38.32650 -36.06925 -35.22373 -33.28566 -33.07281 -32.33746 -30.97456 -29.63494 -27.36116 -27.04165 -24.81269 -23.62071 -23.40830 -22.74677 -21.98156 -20.61554 -19.29906 -19.12724 -17.87133 -17.51910 -17.14789 -16.98153 -16.44783 -16.26448 -16.03153 -15.78624 -15.45050 -15.24615 -15.17939 -14.87223 -14.71816 -14.30850 -14.23347 -14.13845 -13.82324 -13.57030 -13.21906 -12.97088 -12.95240 -12.75156 -12.49389 -12.15670 -12.14296 -11.97434 -11.90148 -11.79831 -11.17825 -10.98119 -10.81792 -10.73450 -10.10669 -9.14838 -9.00744 -8.72514 -7.94844 -5.24073 0.01207 0.54598 1.01990 1.47994 1.49626 1.58127 2.03561 2.21823 2.41498 2.56873 2.92685 3.36567 3.50576 3.61484 3.68840 3.86060 3.90532 4.03920 4.07761 4.23232 4.30697 4.36412 4.45117 4.48761 4.63063 4.65020 4.71835 4.82937 4.85664 4.89293 4.95272 5.13262 5.20216 5.23106 5.40635 5.41115 5.48833 5.55520 5.63314 5.77407 6.13619 6.26598 6.54018 6.64552 6.80903 7.32072 7.33773 8.08795 8.32526 9.28301 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.033933 B = 0.002021 C = 0.001924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.964036 B =13853.408494 C =14552.704716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.110 4.110 3 C -0.107 4.107 4 C -0.114 4.114 5 C 0.066 3.934 6 N -0.559 5.559 7 H 0.441 0.559 8 C 0.147 3.853 9 C -0.277 4.277 10 C 0.585 3.415 11 O -0.594 6.594 12 N -0.708 5.708 13 C 0.104 3.896 14 C 0.111 3.889 15 H 0.103 0.897 16 O -0.561 6.561 17 C 0.122 3.878 18 N -0.739 5.739 19 C -0.248 4.248 20 H 0.075 0.925 21 C -0.076 4.076 22 N -0.967 5.967 23 Si 0.975 3.025 24 H -0.287 1.287 25 H -0.295 1.295 26 H -0.270 1.270 27 C -0.088 4.088 28 C -0.103 4.103 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.220 0.780 35 H 0.413 0.587 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.385 0.615 39 H 0.032 0.968 40 H 0.030 0.970 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.051 29.438 -1.258 31.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.111 4.111 3 C -0.125 4.125 4 C -0.134 4.134 5 C -0.039 4.039 6 N -0.162 5.162 7 H 0.282 0.718 8 C 0.012 3.988 9 C -0.288 4.288 10 C 0.375 3.625 11 O -0.477 6.477 12 N -0.360 5.360 13 C -0.021 4.021 14 C 0.051 3.949 15 H 0.121 0.879 16 O -0.367 6.367 17 C -0.006 4.006 18 N -0.382 5.382 19 C -0.380 4.380 20 H 0.093 0.907 21 C -0.268 4.268 22 N -0.617 5.617 23 Si 0.804 3.196 24 H -0.214 1.214 25 H -0.221 1.221 26 H -0.195 1.195 27 C -0.093 4.093 28 C -0.122 4.122 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.077 0.923 32 H 0.174 0.826 33 H 0.173 0.827 34 H 0.236 0.764 35 H 0.250 0.750 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.234 0.766 39 H 0.050 0.950 40 H 0.048 0.952 41 H 0.210 0.790 42 H 0.060 0.940 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -12.409 29.261 -0.817 31.794 hybrid contribution 0.717 -1.238 -0.295 1.461 sum -11.693 28.022 -1.112 30.384 Atomic orbital electron populations 1.20779 0.89695 1.03306 1.02827 1.20055 0.97326 0.92460 1.01261 1.21083 0.93308 0.98025 1.00134 1.20421 0.93939 0.95354 1.03708 1.18429 0.83946 0.95053 1.06480 1.41524 1.06060 1.07027 1.61552 0.71778 1.22645 0.99289 0.82868 0.94014 1.19979 0.93932 0.91372 1.23522 1.17580 0.84139 0.85708 0.75029 1.90731 1.24186 1.79527 1.53219 1.45532 1.09485 1.05713 1.75288 1.21807 0.97154 0.80150 1.02962 1.22063 0.91221 0.92000 0.89589 0.87882 1.86535 1.49400 1.84504 1.16294 1.21414 0.88595 0.91608 0.98977 1.42404 1.03994 1.03046 1.88759 1.19641 0.92989 0.84239 1.41155 0.90667 1.25593 0.95184 1.02475 1.03570 1.69825 0.97358 1.35717 1.58843 0.85123 0.77050 0.80154 0.77309 1.21389 1.22109 1.19489 1.19052 0.93408 0.92153 1.04655 1.20542 0.92426 0.98145 1.01070 0.90691 0.89583 0.92342 0.82614 0.82663 0.76379 0.74951 0.91006 0.91202 0.76617 0.94981 0.95191 0.79048 0.93974 0.87780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 10.00 71.24 0.71 -0.85 16 2 C -0.11 -2.13 5.88 -19.86 -0.12 -2.25 16 3 C -0.11 -1.53 9.66 22.28 0.22 -1.32 16 4 C -0.11 -1.54 10.07 22.37 0.23 -1.32 16 5 C 0.07 1.16 7.26 38.92 0.28 1.44 16 6 N -0.56 -6.14 5.99 -187.08 -1.12 -7.26 16 7 H 0.44 1.24 8.96 -92.71 -0.83 0.41 16 8 C 0.15 1.99 11.33 83.69 0.95 2.94 16 9 C -0.28 -6.57 6.27 -19.02 -0.12 -6.69 16 10 C 0.58 16.86 7.80 86.51 0.67 17.53 16 11 O -0.59 -22.28 16.16 -4.23 -0.07 -22.34 16 12 N -0.71 -16.65 5.44 -466.86 -2.54 -19.19 16 13 C 0.10 2.75 5.34 86.38 0.46 3.21 16 14 C 0.11 3.28 3.09 30.59 0.09 3.37 16 15 H 0.10 3.11 8.14 -2.38 -0.02 3.10 16 16 O -0.56 -16.45 13.03 -148.98 -1.94 -18.39 16 17 C 0.12 4.63 5.90 86.38 0.51 5.14 16 18 N -0.74 -37.25 5.55 -343.43 -1.91 -39.15 16 19 C -0.25 -13.92 9.99 84.03 0.84 -13.08 16 20 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.08 -4.37 5.50 84.86 0.47 -3.91 16 22 N -0.97 -59.37 13.06 21.65 0.28 -59.08 16 23 Si 0.97 46.27 29.55 68.60 2.03 48.30 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 25 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 26 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 27 C -0.09 -2.22 6.27 -20.08 -0.13 -2.35 16 28 C -0.10 -2.70 9.49 22.40 0.21 -2.48 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.09 0.84 8.08 -2.39 -0.02 0.82 16 31 H 0.06 0.92 8.08 -2.38 -0.02 0.90 16 32 H 0.16 1.23 8.06 -2.91 -0.02 1.20 16 33 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 34 H 0.22 1.11 7.38 -2.91 -0.02 1.09 16 35 H 0.41 7.43 7.23 -92.71 -0.67 6.76 16 36 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 37 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 38 H 0.38 9.38 9.04 -74.06 -0.67 8.71 16 39 H 0.03 1.22 8.14 -2.38 -0.02 1.21 16 40 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.38 20.42 7.67 -92.71 -0.71 19.71 16 42 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 43 H 0.10 3.18 7.45 -2.91 -0.02 3.16 16 Total: -1.00 -81.27 368.93 -1.78 -83.06 By element: Atomic # 1 Polarization: 36.47 SS G_CDS: -1.80 Total: 34.67 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: 5.28 Total: -0.61 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -5.28 Total: -124.69 kcal Atomic # 8 Polarization: -38.73 SS G_CDS: -2.01 Total: -40.74 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.30 kcal Total: -81.27 -1.78 -83.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497122085.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.468 kcal (2) G-P(sol) polarization free energy of solvation -81.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds