Wall clock time and date at job start Tue Mar 31 2020 11:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38757 * 119.84736 * 2 1 4 4 C 1.37768 * 120.63381 * 180.02562 * 3 2 1 5 5 C 1.39122 * 119.92773 * 359.71412 * 4 3 2 6 6 N 1.37965 * 133.18117 * 179.56305 * 5 4 3 7 7 H 0.97001 * 124.79223 * 0.75505 * 6 5 4 8 8 C 1.35476 * 110.42256 * 180.48120 * 6 5 4 9 9 C 1.36373 * 109.76879 * 0.26938 * 8 6 5 10 10 C 1.46907 * 126.76701 * 180.02562 * 9 8 6 11 11 O 1.21675 * 120.00207 * 179.97438 * 10 9 8 12 12 N 1.34778 * 120.00395 * 359.97322 * 10 9 8 13 13 C 1.46493 * 120.00473 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47483 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.46513 * 304.99978 * 14 13 12 16 16 O 1.42896 * 109.47276 * 64.99336 * 14 13 12 17 17 C 1.52999 * 109.47399 * 184.99987 * 14 13 12 18 18 N 1.46499 * 109.47162 * 179.97438 * 17 14 13 19 19 C 1.36936 * 119.99988 * 180.02562 * 18 17 14 20 20 H 1.08006 * 120.00143 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99987 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99851 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99865 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46930 * 90.00537 * 23 21 19 25 25 H 1.48509 * 109.46978 * 210.00348 * 23 21 19 26 26 H 1.48504 * 109.47335 * 329.99930 * 23 21 19 27 27 C 1.40388 * 119.36298 * 0.56025 * 5 4 3 28 28 C 1.37755 * 119.85312 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47211 * 269.97946 * 1 2 3 30 30 H 1.09000 * 109.47451 * 29.97887 * 1 2 3 31 31 H 1.09001 * 109.47438 * 149.98176 * 1 2 3 32 32 H 1.08003 * 119.68352 * 0.04101 * 3 2 1 33 33 H 1.08000 * 120.03234 * 179.97438 * 4 3 2 34 34 H 1.07998 * 125.11276 * 180.23293 * 8 6 5 35 35 H 0.97008 * 119.99611 * 0.02562 * 12 10 9 36 36 H 1.09006 * 109.46916 * 299.99688 * 13 12 10 37 37 H 1.08998 * 109.47448 * 59.99760 * 13 12 10 38 38 H 0.96705 * 113.99624 * 60.00480 * 16 14 13 39 39 H 1.09002 * 109.46913 * 299.99909 * 17 14 13 40 40 H 1.08994 * 109.47137 * 59.99329 * 17 14 13 41 41 H 0.96994 * 119.99812 * 359.97438 * 18 17 14 42 42 H 0.96993 * 119.99973 * 180.02562 * 22 21 19 43 43 H 1.08004 * 120.15727 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1975 1.2035 0.0000 4 6 3.5751 1.2224 -0.0005 5 6 4.2856 0.0264 0.0049 6 7 5.6327 -0.2715 -0.0017 7 1 6.3452 0.3868 -0.0018 8 6 5.8202 -1.6132 -0.0021 9 6 4.6130 -2.2476 -0.0017 10 6 4.3821 -3.6984 -0.0014 11 8 3.2458 -4.1336 -0.0006 12 7 5.4288 -4.5475 -0.0019 13 6 5.1985 -5.9942 -0.0022 14 6 6.5429 -6.7248 -0.0022 15 1 7.1435 -6.3801 -0.8439 16 8 7.2333 -6.4520 1.2188 17 6 6.3050 -8.2309 -0.1281 18 7 7.5923 -8.9302 -0.1288 19 6 7.6299 -10.2951 -0.2329 20 1 6.7105 -10.8561 -0.3142 21 6 8.8497 -10.9577 -0.2341 22 7 8.8859 -12.2696 -0.3347 23 14 10.4397 -9.9875 -0.0942 24 1 10.8040 -9.8380 1.3376 25 1 11.5241 -10.7085 -0.8082 26 1 10.2553 -8.6446 -0.7010 27 6 3.5854 -1.1904 -0.0010 28 6 2.1927 -1.1948 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6499 2.1344 0.0007 33 1 4.1027 2.1648 -0.0009 34 1 6.7811 -2.1062 -0.0031 35 1 6.3347 -4.2006 -0.0022 36 1 4.6343 -6.2725 0.8881 37 1 4.6336 -6.2721 -0.8919 38 1 6.7560 -6.7327 2.0117 39 1 5.7043 -8.5755 0.7136 40 1 5.7784 -8.4389 -1.0595 41 1 8.4179 -8.4264 -0.0561 42 1 9.7381 -12.7326 -0.3351 43 1 1.6528 -2.1302 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497122086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:04 Heat of formation + Delta-G solvation = -22.083867 kcal Electronic energy + Delta-G solvation = -25034.580593 eV Core-core repulsion = 21273.162901 eV Total energy + Delta-G solvation = -3761.417692 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.75664 -39.39414 -37.74618 -37.60793 -34.45234 -34.08974 -32.50294 -31.71335 -31.47472 -30.02461 -28.76392 -26.73176 -25.69750 -23.22669 -22.97858 -22.02813 -21.47675 -21.27728 -19.71061 -18.55883 -17.73398 -16.81278 -16.73981 -16.06303 -16.04725 -15.44615 -15.21280 -14.95904 -14.59951 -14.45122 -14.34931 -14.02856 -13.75851 -13.65517 -13.46645 -13.21094 -12.98615 -12.64307 -12.40593 -12.38072 -11.98449 -11.87335 -11.54223 -11.29770 -11.23990 -10.87480 -10.80200 -10.19390 -10.08162 -10.00648 -9.72567 -9.54934 -9.11121 -8.93094 -8.50564 -8.04596 -7.26076 -5.78037 -3.14146 0.68326 1.22532 1.76392 2.60580 3.13302 3.25609 3.38628 3.43124 3.45862 3.66891 4.27846 4.40124 4.52373 4.59176 4.63152 4.66840 4.74059 4.83308 4.99977 5.15468 5.17685 5.28945 5.31661 5.40028 5.47112 5.48621 5.51332 5.73059 5.74740 5.81509 5.83312 5.88814 6.03412 6.21512 6.34514 6.37205 6.43217 6.45007 6.56317 6.78778 6.98702 7.50245 7.78009 7.98365 8.25760 8.40550 9.20178 9.92015 10.11880 11.40045 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030720 B = 0.002167 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.231245 B =12919.515377 C =13701.968850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.109 4.109 3 C -0.099 4.099 4 C -0.124 4.124 5 C 0.079 3.921 6 N -0.579 5.579 7 H 0.420 0.580 8 C 0.110 3.890 9 C -0.226 4.226 10 C 0.587 3.413 11 O -0.544 6.544 12 N -0.722 5.722 13 C 0.093 3.907 14 C 0.085 3.915 15 H 0.103 0.897 16 O -0.558 6.558 17 C 0.130 3.870 18 N -0.749 5.749 19 C -0.247 4.247 20 H 0.090 0.910 21 C 0.004 3.996 22 N -0.933 5.933 23 Si 0.889 3.111 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.277 1.277 27 C -0.058 4.058 28 C -0.063 4.063 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.126 0.874 33 H 0.121 0.879 34 H 0.180 0.820 35 H 0.400 0.600 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.377 0.623 39 H 0.033 0.967 40 H 0.038 0.962 41 H 0.366 0.634 42 H 0.260 0.740 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.391 31.884 1.251 33.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.110 4.110 3 C -0.118 4.118 4 C -0.145 4.145 5 C -0.026 4.026 6 N -0.180 5.180 7 H 0.257 0.743 8 C -0.023 4.023 9 C -0.237 4.237 10 C 0.375 3.625 11 O -0.422 6.422 12 N -0.374 5.374 13 C -0.032 4.032 14 C 0.025 3.975 15 H 0.121 0.879 16 O -0.363 6.363 17 C 0.002 3.998 18 N -0.396 5.396 19 C -0.377 4.377 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.581 5.581 23 Si 0.719 3.281 24 H -0.210 1.210 25 H -0.218 1.218 26 H -0.203 1.203 27 C -0.063 4.063 28 C -0.082 4.082 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.144 0.856 33 H 0.139 0.861 34 H 0.197 0.803 35 H 0.234 0.766 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.225 0.775 39 H 0.050 0.950 40 H 0.055 0.945 41 H 0.199 0.801 42 H 0.070 0.930 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.761 31.621 0.810 33.412 hybrid contribution 1.747 0.733 0.418 1.940 sum -9.014 32.354 1.228 33.609 Atomic orbital electron populations 1.20731 0.90959 1.02711 1.02250 1.19747 0.96187 0.92578 1.02533 1.20708 0.92825 0.97660 1.00591 1.19979 0.93829 0.94623 1.06064 1.18248 0.82989 0.95422 1.05942 1.41517 1.06346 1.06849 1.63298 0.74265 1.22146 0.99161 0.82728 0.98297 1.20056 0.92151 0.92511 1.18937 1.17211 0.84699 0.84563 0.76007 1.90776 1.22287 1.78589 1.50549 1.45733 1.09046 1.06572 1.76015 1.22056 0.98270 0.79355 1.03477 1.22443 0.91499 0.95444 0.88078 0.87873 1.86523 1.49368 1.84775 1.15656 1.21173 0.90047 0.88803 0.99773 1.42558 1.02022 1.04580 1.90416 1.19052 0.94750 0.80992 1.42914 0.89239 1.24683 0.97297 0.95336 1.01832 1.69706 1.25074 1.06210 1.57090 0.86484 0.84434 0.79320 0.77867 1.21032 1.21838 1.20323 1.18712 0.93023 0.90548 1.03986 1.20585 0.91776 0.98242 0.97591 0.91338 0.91726 0.91435 0.85622 0.86077 0.80282 0.76591 0.90839 0.90214 0.77548 0.94964 0.94453 0.80059 0.93026 0.84821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.00 36.00 0.36 -0.41 16 2 C -0.11 -1.03 5.88 -104.61 -0.62 -1.64 16 3 C -0.10 -0.78 9.66 -39.56 -0.38 -1.17 16 4 C -0.12 -0.98 10.07 -39.43 -0.40 -1.37 16 5 C 0.08 0.73 7.26 -83.97 -0.61 0.13 16 6 N -0.58 -3.80 5.99 -10.48 -0.06 -3.86 16 7 H 0.42 1.27 8.96 -40.82 -0.37 0.91 16 8 C 0.11 0.82 11.33 -16.61 -0.19 0.63 16 9 C -0.23 -2.56 6.27 -103.32 -0.65 -3.21 16 10 C 0.59 7.86 7.80 -12.75 -0.10 7.76 16 11 O -0.54 -9.24 16.16 5.21 0.08 -9.15 16 12 N -0.72 -8.10 5.49 -61.55 -0.34 -8.44 16 13 C 0.09 1.15 5.31 -4.04 -0.02 1.13 16 14 C 0.09 1.18 3.09 -26.73 -0.08 1.10 16 15 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 16 O -0.56 -7.81 13.03 -35.23 -0.46 -8.27 16 17 C 0.13 2.37 5.92 -4.04 -0.02 2.35 16 18 N -0.75 -17.60 5.30 -59.91 -0.32 -17.92 16 19 C -0.25 -7.01 10.47 -15.06 -0.16 -7.17 16 20 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 21 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 22 N -0.93 -29.40 13.97 55.49 0.78 -28.63 16 23 Si 0.89 22.31 27.73 -169.99 -4.71 17.59 16 24 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 26 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 27 C -0.06 -0.69 6.27 -104.96 -0.66 -1.35 16 28 C -0.06 -0.75 9.49 -39.37 -0.37 -1.12 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 31 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 32 H 0.13 0.68 8.06 -52.48 -0.42 0.26 16 33 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 34 H 0.18 0.70 7.38 -52.49 -0.39 0.31 16 35 H 0.40 3.55 7.35 -40.82 -0.30 3.25 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.38 4.40 9.05 45.56 0.41 4.81 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.37 8.54 5.41 -40.82 -0.22 8.32 16 42 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 43 H 0.13 1.70 7.45 -52.48 -0.39 1.31 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -37.12 365.82 -8.58 -45.70 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: -5.07 Total: 11.77 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -3.99 Total: -4.31 kcal Atomic # 7 Polarization: -58.90 SS G_CDS: 0.06 Total: -58.84 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: -0.37 Total: -17.42 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -4.71 Total: 17.59 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -37.12 -8.58 -45.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497122086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.613 kcal (2) G-P(sol) polarization free energy of solvation -37.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds