Wall clock time and date at job start Tue Mar 31 2020 11:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38757 * 119.84736 * 2 1 4 4 C 1.37768 * 120.63381 * 180.02562 * 3 2 1 5 5 C 1.39122 * 119.92773 * 359.71412 * 4 3 2 6 6 N 1.37965 * 133.18117 * 179.56305 * 5 4 3 7 7 H 0.97001 * 124.79223 * 0.75505 * 6 5 4 8 8 C 1.35476 * 110.42256 * 180.48120 * 6 5 4 9 9 C 1.36373 * 109.76879 * 0.26938 * 8 6 5 10 10 C 1.46907 * 126.76701 * 180.02562 * 9 8 6 11 11 O 1.21675 * 120.00207 * 179.97438 * 10 9 8 12 12 N 1.34778 * 120.00395 * 359.97322 * 10 9 8 13 13 C 1.46493 * 120.00473 * 180.02562 * 12 10 9 14 14 C 1.53005 * 109.47483 * 180.02562 * 13 12 10 15 15 H 1.09000 * 109.46513 * 304.99978 * 14 13 12 16 16 O 1.42896 * 109.47276 * 64.99336 * 14 13 12 17 17 C 1.52999 * 109.47399 * 184.99987 * 14 13 12 18 18 N 1.46499 * 109.47162 * 179.97438 * 17 14 13 19 19 C 1.36936 * 119.99988 * 180.02562 * 18 17 14 20 20 H 1.08006 * 120.00143 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99987 * 179.97438 * 19 18 17 22 22 N 1.31618 * 119.99851 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99865 * 359.97438 * 21 19 18 24 24 H 1.48499 * 109.46930 * 90.00537 * 23 21 19 25 25 H 1.48509 * 109.46978 * 210.00348 * 23 21 19 26 26 H 1.48504 * 109.47335 * 329.99930 * 23 21 19 27 27 C 1.40388 * 119.36298 * 0.56025 * 5 4 3 28 28 C 1.37755 * 119.85312 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.47211 * 269.97946 * 1 2 3 30 30 H 1.09000 * 109.47451 * 29.97887 * 1 2 3 31 31 H 1.09001 * 109.47438 * 149.98176 * 1 2 3 32 32 H 1.08003 * 119.68352 * 0.04101 * 3 2 1 33 33 H 1.08000 * 120.03234 * 179.97438 * 4 3 2 34 34 H 1.07998 * 125.11276 * 180.23293 * 8 6 5 35 35 H 0.97008 * 119.99611 * 0.02562 * 12 10 9 36 36 H 1.09006 * 109.46916 * 299.99688 * 13 12 10 37 37 H 1.08998 * 109.47448 * 59.99760 * 13 12 10 38 38 H 0.96705 * 113.99624 * 60.00480 * 16 14 13 39 39 H 1.09002 * 109.46913 * 299.99909 * 17 14 13 40 40 H 1.08994 * 109.47137 * 59.99329 * 17 14 13 41 41 H 0.96994 * 119.99812 * 359.97438 * 18 17 14 42 42 H 0.96993 * 119.99973 * 180.02562 * 22 21 19 43 43 H 1.08004 * 120.15727 * 0.02562 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1975 1.2035 0.0000 4 6 3.5751 1.2224 -0.0005 5 6 4.2856 0.0264 0.0049 6 7 5.6327 -0.2715 -0.0017 7 1 6.3452 0.3868 -0.0018 8 6 5.8202 -1.6132 -0.0021 9 6 4.6130 -2.2476 -0.0017 10 6 4.3821 -3.6984 -0.0014 11 8 3.2458 -4.1336 -0.0006 12 7 5.4288 -4.5475 -0.0019 13 6 5.1985 -5.9942 -0.0022 14 6 6.5429 -6.7248 -0.0022 15 1 7.1435 -6.3801 -0.8439 16 8 7.2333 -6.4520 1.2188 17 6 6.3050 -8.2309 -0.1281 18 7 7.5923 -8.9302 -0.1288 19 6 7.6299 -10.2951 -0.2329 20 1 6.7105 -10.8561 -0.3142 21 6 8.8497 -10.9577 -0.2341 22 7 8.8859 -12.2696 -0.3347 23 14 10.4397 -9.9875 -0.0942 24 1 10.8040 -9.8380 1.3376 25 1 11.5241 -10.7085 -0.8082 26 1 10.2553 -8.6446 -0.7010 27 6 3.5854 -1.1904 -0.0010 28 6 2.1927 -1.1948 -0.0005 29 1 -0.3634 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.6499 2.1344 0.0007 33 1 4.1027 2.1648 -0.0009 34 1 6.7811 -2.1062 -0.0031 35 1 6.3347 -4.2006 -0.0022 36 1 4.6343 -6.2725 0.8881 37 1 4.6336 -6.2721 -0.8919 38 1 6.7560 -6.7327 2.0117 39 1 5.7043 -8.5755 0.7136 40 1 5.7784 -8.4389 -1.0595 41 1 8.4179 -8.4264 -0.0561 42 1 9.7381 -12.7326 -0.3351 43 1 1.6528 -2.1302 -0.0014 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497122086.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:08:03 Heat of formation + Delta-G solvation = -52.069774 kcal Electronic energy + Delta-G solvation = -25035.880879 eV Core-core repulsion = 21273.162901 eV Total energy + Delta-G solvation = -3762.717978 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.41671 -40.40906 -38.88308 -38.33110 -36.17328 -35.25432 -33.49054 -33.15689 -32.34475 -31.17415 -29.76628 -27.38053 -27.14181 -24.54929 -23.62122 -23.31759 -22.82958 -21.98818 -20.66679 -19.75630 -19.20945 -17.85009 -17.52898 -17.17136 -16.96150 -16.52725 -16.26194 -16.05237 -15.77733 -15.43058 -15.24757 -15.23382 -14.98669 -14.71890 -14.35322 -14.25978 -14.19033 -13.93824 -13.59785 -13.34127 -13.16315 -12.97749 -12.80127 -12.49895 -12.22541 -12.14778 -11.92545 -11.86411 -11.82031 -11.20761 -11.01708 -10.83909 -10.73780 -10.11186 -9.31385 -9.15250 -8.72779 -8.03066 -5.37050 0.00952 0.54054 1.01806 1.40004 1.43835 1.51183 2.03207 2.21338 2.41413 2.49349 2.92242 3.27426 3.37114 3.55698 3.68334 3.85027 3.89639 4.01013 4.06804 4.12012 4.20442 4.30132 4.42957 4.47097 4.61926 4.63628 4.71503 4.83189 4.84947 4.88815 4.93890 5.12721 5.19190 5.19783 5.40265 5.41125 5.54940 5.62786 5.74100 5.77003 6.13139 6.20271 6.53826 6.64344 6.76926 7.08046 7.32481 7.82947 8.03332 9.18232 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.030720 B = 0.002167 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.231245 B =12919.515377 C =13701.968850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.110 4.110 3 C -0.107 4.107 4 C -0.114 4.114 5 C 0.066 3.934 6 N -0.559 5.559 7 H 0.441 0.559 8 C 0.148 3.852 9 C -0.277 4.277 10 C 0.585 3.415 11 O -0.595 6.595 12 N -0.708 5.708 13 C 0.103 3.897 14 C 0.109 3.891 15 H 0.113 0.887 16 O -0.561 6.561 17 C 0.123 3.877 18 N -0.751 5.751 19 C -0.238 4.238 20 H 0.055 0.945 21 C -0.066 4.066 22 N -0.984 5.984 23 Si 0.962 3.038 24 H -0.279 1.279 25 H -0.296 1.296 26 H -0.250 1.250 27 C -0.089 4.089 28 C -0.103 4.103 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.057 0.943 32 H 0.156 0.844 33 H 0.156 0.844 34 H 0.222 0.778 35 H 0.414 0.586 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.388 0.612 39 H 0.034 0.966 40 H 0.036 0.964 41 H 0.370 0.630 42 H 0.258 0.742 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.299 36.200 1.457 37.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.111 4.111 3 C -0.126 4.126 4 C -0.134 4.134 5 C -0.039 4.039 6 N -0.162 5.162 7 H 0.282 0.718 8 C 0.013 3.987 9 C -0.288 4.288 10 C 0.375 3.625 11 O -0.477 6.477 12 N -0.360 5.360 13 C -0.022 4.022 14 C 0.049 3.951 15 H 0.131 0.869 16 O -0.368 6.368 17 C -0.005 4.005 18 N -0.397 5.397 19 C -0.369 4.369 20 H 0.073 0.927 21 C -0.258 4.258 22 N -0.634 5.634 23 Si 0.789 3.211 24 H -0.205 1.205 25 H -0.223 1.223 26 H -0.175 1.175 27 C -0.093 4.093 28 C -0.122 4.122 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.076 0.924 32 H 0.173 0.827 33 H 0.173 0.827 34 H 0.238 0.762 35 H 0.251 0.749 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.237 0.763 39 H 0.052 0.948 40 H 0.054 0.946 41 H 0.204 0.796 42 H 0.067 0.933 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.660 36.027 1.025 37.067 hybrid contribution 0.988 -0.571 0.367 1.198 sum -7.672 35.456 1.392 36.303 Atomic orbital electron populations 1.20780 0.89757 1.03288 1.02820 1.20053 0.97299 0.92494 1.01272 1.21079 0.93346 0.98001 1.00166 1.20417 0.93921 0.95401 1.03701 1.18415 0.83991 0.95006 1.06476 1.41530 1.06008 1.07088 1.61547 0.71770 1.22663 0.99289 0.82807 0.93953 1.19972 0.93909 0.91358 1.23561 1.17583 0.84168 0.85716 0.75023 1.90744 1.24274 1.79528 1.53146 1.45514 1.09445 1.05658 1.75376 1.21817 0.97245 0.80148 1.03034 1.22115 0.92158 0.92189 0.88640 0.86879 1.86500 1.49725 1.84601 1.16006 1.21392 0.87835 0.91589 0.99638 1.42509 1.04101 1.02872 1.90256 1.19042 0.93499 0.83169 1.41219 0.92692 1.25569 1.01356 0.96386 1.02458 1.69894 1.25906 1.08361 1.59248 0.85303 0.79036 0.78733 0.78000 1.20479 1.22330 1.17492 1.19060 0.93393 0.92242 1.04632 1.20544 0.92491 0.98108 1.01081 0.90697 0.89613 0.92361 0.82677 0.82675 0.76158 0.74879 0.91268 0.90976 0.76296 0.94839 0.94565 0.79595 0.93295 0.87816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.00 71.23 0.71 -0.82 16 2 C -0.11 -2.08 5.88 -19.86 -0.12 -2.20 16 3 C -0.11 -1.48 9.66 22.28 0.22 -1.26 16 4 C -0.11 -1.46 10.07 22.37 0.23 -1.23 16 5 C 0.07 1.10 7.26 38.91 0.28 1.38 16 6 N -0.56 -5.35 5.99 -187.08 -1.12 -6.47 16 7 H 0.44 0.61 8.96 -92.71 -0.83 -0.22 16 8 C 0.15 1.73 11.33 83.70 0.95 2.68 16 9 C -0.28 -6.14 6.27 -19.02 -0.12 -6.26 16 10 C 0.58 15.90 7.80 86.51 0.67 16.57 16 11 O -0.59 -21.62 16.16 -4.27 -0.07 -21.68 16 12 N -0.71 -14.95 5.49 -466.85 -2.56 -17.52 16 13 C 0.10 2.46 5.31 86.38 0.46 2.92 16 14 C 0.11 2.80 3.09 30.60 0.09 2.89 16 15 H 0.11 2.76 8.14 -2.39 -0.02 2.74 16 16 O -0.56 -14.08 13.03 -148.98 -1.94 -16.02 16 17 C 0.12 4.35 5.92 86.38 0.51 4.86 16 18 N -0.75 -34.37 5.30 -343.45 -1.82 -36.19 16 19 C -0.24 -13.65 10.47 84.03 0.88 -12.77 16 20 H 0.06 3.46 8.06 -2.91 -0.02 3.43 16 21 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 22 N -0.98 -63.41 13.97 21.65 0.30 -63.11 16 23 Si 0.96 45.56 27.73 68.60 1.90 47.46 16 24 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 25 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 26 H -0.25 -10.63 6.52 99.48 0.65 -9.99 16 27 C -0.09 -2.15 6.27 -20.08 -0.13 -2.27 16 28 C -0.10 -2.64 9.49 22.40 0.21 -2.42 16 29 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.09 0.81 8.08 -2.39 -0.02 0.79 16 31 H 0.06 0.90 8.08 -2.39 -0.02 0.88 16 32 H 0.16 1.16 8.06 -2.91 -0.02 1.13 16 33 H 0.16 0.87 8.06 -2.91 -0.02 0.84 16 34 H 0.22 0.57 7.38 -2.91 -0.02 0.55 16 35 H 0.41 6.13 7.35 -92.70 -0.68 5.45 16 36 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 37 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.39 8.10 9.05 -74.05 -0.67 7.43 16 39 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.37 16.28 5.41 -92.71 -0.50 15.78 16 42 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 43 H 0.10 3.11 7.45 -2.91 -0.02 3.08 16 Total: -1.00 -85.01 365.82 -1.65 -86.66 By element: Atomic # 1 Polarization: 29.93 SS G_CDS: -1.66 Total: 28.27 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 5.32 Total: -1.39 kcal Atomic # 7 Polarization: -118.09 SS G_CDS: -5.20 Total: -123.29 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -2.01 Total: -37.71 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.90 Total: 47.46 kcal Total: -85.01 -1.65 -86.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497122086.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.591 kcal (2) G-P(sol) polarization free energy of solvation -85.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds