Wall clock time and date at job start Tue Mar 31 2020 11:55:24
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53000 * 1
3 3 C 1.53004 * 109.49752 * 2 1
4 4 O 1.42903 * 109.47010 * 59.93725 * 3 2 1
5 5 C 1.53040 * 109.52709 * 120.08175 * 2 1 3
6 6 C 1.53037 * 109.53682 * 58.60265 * 5 2 1
7 7 C 1.52765 * 109.38399 * 61.24122 * 6 5 2
8 8 N 1.46929 * 109.00777 * 305.58945 * 7 6 5
9 9 S 1.65596 * 120.62871 * 233.58392 * 8 7 6
10 10 O 1.42103 * 104.27561 * 153.64728 * 9 8 7
11 11 O 1.42101 * 104.27786 * 25.78953 * 9 8 7
12 12 C 1.81394 * 104.44904 * 269.71875 * 9 8 7
13 13 C 1.52998 * 109.47320 * 172.76867 * 12 9 8
14 14 C 1.50703 * 115.56259 * 40.25725 * 13 12 9
15 15 H 1.08001 * 119.99858 * 267.39074 * 14 13 12
16 16 C 1.37879 * 120.00085 * 87.38453 * 14 13 12
17 17 N 1.31514 * 119.99903 * 353.99299 * 16 14 13
18 18 Si 1.86800 * 119.99934 * 173.98676 * 16 14 13
19 19 H 1.48506 * 109.47249 * 0.02562 * 18 16 14
20 20 H 1.48500 * 109.46814 * 120.00061 * 18 16 14
21 21 H 1.48496 * 109.47484 * 240.00373 * 18 16 14
22 22 C 1.53005 * 117.50356 * 185.94617 * 13 12 9
23 23 C 1.52997 * 60.03146 * 107.50289 * 22 13 12
24 24 C 1.46919 * 118.73836 * 53.30525 * 8 7 6
25 25 H 1.08998 * 109.47058 * 180.02562 * 1 2 3
26 26 H 1.08999 * 109.47021 * 300.06125 * 1 2 3
27 27 H 1.08998 * 109.46865 * 60.06342 * 1 2 3
28 28 H 1.09000 * 109.47210 * 179.97438 * 3 2 1
29 29 H 1.08998 * 109.47211 * 299.93648 * 3 2 1
30 30 H 0.96696 * 114.00048 * 179.97438 * 4 3 2
31 31 H 1.08996 * 109.46298 * 178.62172 * 5 2 1
32 32 H 1.09003 * 109.46115 * 298.59612 * 5 2 1
33 33 H 1.09002 * 109.49888 * 181.31790 * 6 5 2
34 34 H 1.09003 * 109.49671 * 301.38210 * 6 5 2
35 35 H 1.08993 * 109.51040 * 185.70802 * 7 6 5
36 36 H 1.09001 * 109.42779 * 65.42419 * 7 6 5
37 37 H 1.09003 * 109.47482 * 52.77097 * 12 9 8
38 38 H 1.09000 * 109.47629 * 292.77097 * 12 9 8
39 39 H 0.96999 * 119.99694 * 185.01303 * 17 16 14
40 40 H 1.09005 * 117.49568 * 359.97438 * 22 13 12
41 41 H 1.08997 * 117.50240 * 215.00808 * 22 13 12
42 42 H 1.08993 * 117.49966 * 107.48516 * 23 22 13
43 43 H 1.09006 * 117.49941 * 252.47825 * 23 22 13
44 44 H 1.09007 * 109.58488 * 66.43097 * 24 8 7
45 45 H 1.09001 * 109.58984 * 186.85502 * 24 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0407 1.4423 0.0000
4 8 1.5634 2.1166 1.1661
5 6 2.0415 -0.7230 1.2481
6 6 1.5044 -2.1559 1.2657
7 6 2.0106 -2.9023 0.0327
8 7 1.6523 -2.1379 -1.1699
9 16 0.8198 -2.8553 -2.4087
10 8 0.1329 -1.7818 -3.0372
11 8 0.1080 -3.9153 -1.7849
12 6 2.1106 -3.5116 -3.5011
13 6 1.4664 -4.3595 -4.5997
14 6 0.1861 -3.8126 -5.1768
15 1 -0.7649 -4.1150 -4.7637
16 6 0.2289 -2.9261 -6.2319
17 7 1.3850 -2.4663 -6.6580
18 14 -1.3554 -2.3781 -7.0562
19 1 -2.5109 -3.0349 -6.3937
20 1 -1.4903 -0.9040 -6.9386
21 1 -1.3245 -2.7596 -8.4910
22 6 2.3997 -5.1186 -5.5451
23 6 1.5980 -5.8805 -4.4879
24 6 2.0413 -0.7234 -1.2498
25 1 -0.3633 -1.0277 0.0005
26 1 -0.3633 0.5148 0.8894
27 1 -0.3633 0.5128 -0.8905
28 1 3.1307 1.4418 0.0005
29 1 1.6785 1.9560 -0.8905
30 1 1.8494 3.0379 1.2324
31 1 3.1312 -0.7438 1.2347
32 1 1.6993 -0.1961 2.1389
33 1 1.8500 -2.6629 2.1667
34 1 0.4146 -2.1361 1.2547
35 1 1.5492 -3.8888 -0.0105
36 1 3.0941 -3.0055 0.0907
37 1 2.7977 -4.1285 -2.9220
38 1 2.6581 -2.6851 -3.9541
39 1 1.4115 -1.7882 -7.3511
40 1 3.4727 -5.0136 -5.3847
41 1 2.0880 -5.2220 -6.5845
42 1 0.7586 -6.4849 -4.8317
43 1 2.1436 -6.2774 -3.6318
44 1 3.1275 -0.6454 -1.2985
45 1 1.6003 -0.2728 -2.1389
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001649873185.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:55:24
Heat of formation + Delta-G solvation = -105.584985 kcal
Electronic energy + Delta-G solvation = -26865.118941 eV
Core-core repulsion = 23203.231569 eV
Total energy + Delta-G solvation = -3661.887372 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 317.149 amu
Computer time = 0.62 seconds
Orbital eigenvalues (eV)
-39.48149 -36.72018 -36.55962 -36.16012 -34.89514 -33.05360 -32.04650 -31.69777
-28.16956 -27.01072 -25.96017 -25.50311 -24.30255 -21.91033 -21.18234 -19.54564
-18.79667 -18.02128 -17.46885 -17.05926 -16.37077 -15.46706 -15.27152 -15.06538
-14.66735 -14.53863 -14.33737 -14.06976 -13.76852 -13.55179 -13.22873 -13.03418
-12.69986 -12.52481 -12.18432 -11.81835 -11.69062 -11.59011 -11.28063 -11.11444
-11.04772 -10.97733 -10.92615 -10.82925 -10.65555 -10.50460 -10.34986 -10.31910
-10.19200 -10.08281 -9.96577 -9.67684 -8.97718 -8.67461 -8.52337 -8.07739
-6.16136 -4.30812 1.15360 3.30577 3.39098 3.45139 3.46605 4.13513
4.39428 4.61394 4.75960 4.79631 4.92300 4.99887 5.14447 5.16288
5.23405 5.24937 5.33868 5.37291 5.43753 5.59669 5.63651 5.78717
5.79075 5.83585 5.89491 5.98006 6.05190 6.11734 6.14028 6.26471
6.30814 6.36175 6.37737 6.48779 6.59497 6.62346 6.71008 6.92581
6.99343 7.19787 7.41842 7.51178 7.78228 8.18815 8.78314 9.46067
10.91378
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.017329 B = 0.005018 C = 0.004375
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1615.437997 B = 5578.910158 C = 6398.545692
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.071 4.071
3 C 0.086 3.914
4 O -0.569 6.569
5 C -0.099 4.099
6 C -0.135 4.135
7 C 0.117 3.883
8 N -1.010 6.010
9 S 2.623 3.377
10 O -0.940 6.940
11 O -0.971 6.971
12 C -0.561 4.561
13 C 0.048 3.952
14 C -0.540 4.540
15 H 0.069 0.931
16 C 0.096 3.904
17 N -0.868 5.868
18 Si 0.892 3.108
19 H -0.268 1.268
20 H -0.277 1.277
21 H -0.282 1.282
22 C -0.141 4.141
23 C -0.205 4.205
24 C 0.129 3.871
25 H 0.058 0.942
26 H 0.059 0.941
27 H 0.058 0.942
28 H 0.046 0.954
29 H 0.050 0.950
30 H 0.375 0.625
31 H 0.058 0.942
32 H 0.070 0.930
33 H 0.070 0.930
34 H 0.071 0.929
35 H 0.092 0.908
36 H 0.061 0.939
37 H 0.095 0.905
38 H 0.125 0.875
39 H 0.264 0.736
40 H 0.065 0.935
41 H 0.086 0.914
42 H 0.085 0.915
43 H 0.068 0.932
44 H 0.063 0.937
45 H 0.098 0.902
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 6.039 5.746 13.613 15.963
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.195 4.195
2 C -0.072 4.072
3 C 0.008 3.992
4 O -0.373 6.373
5 C -0.137 4.137
6 C -0.174 4.174
7 C -0.009 4.009
8 N -0.846 5.846
9 S 2.721 3.279
10 O -0.930 6.930
11 O -0.962 6.962
12 C -0.693 4.693
13 C 0.045 3.955
14 C -0.577 4.577
15 H 0.087 0.913
16 C -0.111 4.111
17 N -0.502 5.502
18 Si 0.719 3.281
19 H -0.192 1.192
20 H -0.203 1.203
21 H -0.208 1.208
22 C -0.180 4.180
23 C -0.242 4.242
24 C 0.002 3.998
25 H 0.076 0.924
26 H 0.078 0.922
27 H 0.077 0.923
28 H 0.064 0.936
29 H 0.068 0.932
30 H 0.222 0.778
31 H 0.077 0.923
32 H 0.088 0.912
33 H 0.088 0.912
34 H 0.090 0.910
35 H 0.110 0.890
36 H 0.079 0.921
37 H 0.113 0.887
38 H 0.143 0.857
39 H 0.074 0.926
40 H 0.083 0.917
41 H 0.105 0.895
42 H 0.103 0.897
43 H 0.087 0.913
44 H 0.082 0.918
45 H 0.116 0.884
Dipole moment (debyes) X Y Z Total
from point charges 4.917 5.207 13.486 15.270
hybrid contribution 0.433 0.850 -0.838 1.270
sum 5.350 6.057 12.649 15.010
Atomic orbital electron populations
1.21808 0.93462 1.02196 1.02060 1.20860 0.97414 0.92787 0.96161
1.22149 0.96929 0.92575 0.87549 1.86470 1.77544 1.28675 1.44639
1.21432 0.99772 0.95084 0.97395 1.21859 1.02036 0.95986 0.97499
1.21283 0.99686 0.95433 0.84489 1.58197 1.76280 1.18076 1.32002
1.04746 0.75998 0.74197 0.72991 1.93513 1.69808 1.53822 1.75849
1.93461 1.69658 1.58066 1.74997 1.30041 1.15961 1.10994 1.12296
1.18215 0.96336 0.86963 0.93947 1.20633 0.90494 1.28758 1.17829
0.91288 1.24905 0.96359 0.94586 0.95280 1.69975 1.24455 1.27099
1.28685 0.86519 0.83765 0.79049 0.78808 1.19172 1.20301 1.20815
1.22499 0.94963 1.04502 0.96004 1.23148 1.03073 0.96852 1.01153
1.21302 0.99288 0.80814 0.98349 0.92352 0.92167 0.92296 0.93625
0.93188 0.77841 0.92306 0.91175 0.91168 0.90997 0.88966 0.92081
0.88661 0.85686 0.92629 0.91692 0.89540 0.89687 0.91324 0.91850
0.88402
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.01 7.84 37.16 0.29 -1.72 16
2 C -0.07 -0.89 0.60 -154.39 -0.09 -0.99 16
3 C 0.09 0.90 5.92 37.16 0.22 1.12 16
4 O -0.57 -5.67 12.29 -35.23 -0.43 -6.10 16
5 C -0.10 -1.13 4.59 -26.69 -0.12 -1.25 16
6 C -0.13 -1.61 5.72 -26.83 -0.15 -1.76 16
7 C 0.12 1.56 6.40 -3.93 -0.03 1.54 16
8 N -1.01 -16.19 2.67 -113.77 -0.30 -16.49 16
9 S 2.62 55.67 4.61 -107.50 -0.50 55.17 16
10 O -0.94 -22.95 15.80 -57.54 -0.91 -23.86 16
11 O -0.97 -22.54 16.58 -57.54 -0.95 -23.49 16
12 C -0.56 -11.90 6.29 37.16 0.23 -11.67 16
13 C 0.05 1.17 1.69 -155.62 -0.26 0.91 16
14 C -0.54 -14.94 6.97 -34.44 -0.24 -15.18 16
15 H 0.07 1.97 7.82 -52.49 -0.41 1.56 16
16 C 0.10 2.65 5.38 -17.82 -0.10 2.55 16
17 N -0.87 -24.06 12.81 55.43 0.71 -23.35 16
18 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16
19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16
20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16
21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
22 C -0.14 -3.24 9.31 -26.73 -0.25 -3.49 16
23 C -0.21 -4.51 9.88 -26.69 -0.26 -4.77 16
24 C 0.13 1.82 5.11 -3.71 -0.02 1.80 16
25 H 0.06 0.93 5.97 -51.93 -0.31 0.62 16
26 H 0.06 0.82 7.68 -51.93 -0.40 0.42 16
27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16
28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16
29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16
30 H 0.38 2.04 9.12 45.56 0.42 2.45 16
31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16
32 H 0.07 0.81 7.65 -51.93 -0.40 0.41 16
33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16
34 H 0.07 0.95 6.34 -51.93 -0.33 0.62 16
35 H 0.09 1.30 6.85 -51.93 -0.36 0.95 16
36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
37 H 0.09 1.69 7.95 -51.92 -0.41 1.28 16
38 H 0.12 2.67 8.14 -51.92 -0.42 2.25 16
39 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16
40 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16
41 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16
42 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16
43 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16
44 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16
45 H 0.10 1.53 6.86 -51.93 -0.36 1.18 16
LS Contribution 363.55 15.07 5.48 5.48
Total: -1.00 -33.18 363.55 -9.47 -42.65
By element:
Atomic # 1 Polarization: 12.76 SS G_CDS: -6.76 Total: 6.00 kcal
Atomic # 6 Polarization: -32.14 SS G_CDS: -0.78 Total: -32.92 kcal
Atomic # 7 Polarization: -40.25 SS G_CDS: 0.41 Total: -39.85 kcal
Atomic # 8 Polarization: -51.16 SS G_CDS: -2.30 Total: -53.46 kcal
Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal
Atomic # 16 Polarization: 55.67 SS G_CDS: -0.50 Total: 55.17 kcal
Total LS contribution 5.48 Total: 5.48 kcal
Total: -33.18 -9.47 -42.65 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001649873185.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.932 kcal
(2) G-P(sol) polarization free energy of solvation -33.184 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.116 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.585 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.62 seconds