Wall clock time and date at job start Tue Mar 31 2020 11:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.49752 * 2 1 4 4 O 1.42903 * 109.47010 * 59.93725 * 3 2 1 5 5 C 1.53040 * 109.52709 * 120.08175 * 2 1 3 6 6 C 1.53037 * 109.53682 * 58.60265 * 5 2 1 7 7 C 1.52765 * 109.38399 * 61.24122 * 6 5 2 8 8 N 1.46929 * 109.00777 * 305.58945 * 7 6 5 9 9 S 1.65596 * 120.62871 * 233.58392 * 8 7 6 10 10 O 1.42103 * 104.27561 * 153.64728 * 9 8 7 11 11 O 1.42101 * 104.27786 * 25.78953 * 9 8 7 12 12 C 1.81394 * 104.44904 * 269.71875 * 9 8 7 13 13 C 1.52998 * 109.47320 * 172.76867 * 12 9 8 14 14 C 1.50703 * 115.56259 * 40.25725 * 13 12 9 15 15 H 1.08001 * 119.99858 * 267.39074 * 14 13 12 16 16 C 1.37879 * 120.00085 * 87.38453 * 14 13 12 17 17 N 1.31514 * 119.99903 * 353.99299 * 16 14 13 18 18 Si 1.86800 * 119.99934 * 173.98676 * 16 14 13 19 19 H 1.48506 * 109.47249 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46814 * 120.00061 * 18 16 14 21 21 H 1.48496 * 109.47484 * 240.00373 * 18 16 14 22 22 C 1.53005 * 117.50356 * 185.94617 * 13 12 9 23 23 C 1.52997 * 60.03146 * 107.50289 * 22 13 12 24 24 C 1.46919 * 118.73836 * 53.30525 * 8 7 6 25 25 H 1.08998 * 109.47058 * 180.02562 * 1 2 3 26 26 H 1.08999 * 109.47021 * 300.06125 * 1 2 3 27 27 H 1.08998 * 109.46865 * 60.06342 * 1 2 3 28 28 H 1.09000 * 109.47210 * 179.97438 * 3 2 1 29 29 H 1.08998 * 109.47211 * 299.93648 * 3 2 1 30 30 H 0.96696 * 114.00048 * 179.97438 * 4 3 2 31 31 H 1.08996 * 109.46298 * 178.62172 * 5 2 1 32 32 H 1.09003 * 109.46115 * 298.59612 * 5 2 1 33 33 H 1.09002 * 109.49888 * 181.31790 * 6 5 2 34 34 H 1.09003 * 109.49671 * 301.38210 * 6 5 2 35 35 H 1.08993 * 109.51040 * 185.70802 * 7 6 5 36 36 H 1.09001 * 109.42779 * 65.42419 * 7 6 5 37 37 H 1.09003 * 109.47482 * 52.77097 * 12 9 8 38 38 H 1.09000 * 109.47629 * 292.77097 * 12 9 8 39 39 H 0.96999 * 119.99694 * 185.01303 * 17 16 14 40 40 H 1.09005 * 117.49568 * 359.97438 * 22 13 12 41 41 H 1.08997 * 117.50240 * 215.00808 * 22 13 12 42 42 H 1.08993 * 117.49966 * 107.48516 * 23 22 13 43 43 H 1.09006 * 117.49941 * 252.47825 * 23 22 13 44 44 H 1.09007 * 109.58488 * 66.43097 * 24 8 7 45 45 H 1.09001 * 109.58984 * 186.85502 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0407 1.4423 0.0000 4 8 1.5634 2.1166 1.1661 5 6 2.0415 -0.7230 1.2481 6 6 1.5044 -2.1559 1.2657 7 6 2.0106 -2.9023 0.0327 8 7 1.6523 -2.1379 -1.1699 9 16 0.8198 -2.8553 -2.4087 10 8 0.1329 -1.7818 -3.0372 11 8 0.1080 -3.9153 -1.7849 12 6 2.1106 -3.5116 -3.5011 13 6 1.4664 -4.3595 -4.5997 14 6 0.1861 -3.8126 -5.1768 15 1 -0.7649 -4.1150 -4.7637 16 6 0.2289 -2.9261 -6.2319 17 7 1.3850 -2.4663 -6.6580 18 14 -1.3554 -2.3781 -7.0562 19 1 -2.5109 -3.0349 -6.3937 20 1 -1.4903 -0.9040 -6.9386 21 1 -1.3245 -2.7596 -8.4910 22 6 2.3997 -5.1186 -5.5451 23 6 1.5980 -5.8805 -4.4879 24 6 2.0413 -0.7234 -1.2498 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5148 0.8894 27 1 -0.3633 0.5128 -0.8905 28 1 3.1307 1.4418 0.0005 29 1 1.6785 1.9560 -0.8905 30 1 1.8494 3.0379 1.2324 31 1 3.1312 -0.7438 1.2347 32 1 1.6993 -0.1961 2.1389 33 1 1.8500 -2.6629 2.1667 34 1 0.4146 -2.1361 1.2547 35 1 1.5492 -3.8888 -0.0105 36 1 3.0941 -3.0055 0.0907 37 1 2.7977 -4.1285 -2.9220 38 1 2.6581 -2.6851 -3.9541 39 1 1.4115 -1.7882 -7.3511 40 1 3.4727 -5.0136 -5.3847 41 1 2.0880 -5.2220 -6.5845 42 1 0.7586 -6.4849 -4.8317 43 1 2.1436 -6.2774 -3.6318 44 1 3.1275 -0.6454 -1.2985 45 1 1.6003 -0.2728 -2.1389 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649873185.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:24 Heat of formation + Delta-G solvation = -105.584985 kcal Electronic energy + Delta-G solvation = -26865.118941 eV Core-core repulsion = 23203.231569 eV Total energy + Delta-G solvation = -3661.887372 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.48149 -36.72018 -36.55962 -36.16012 -34.89514 -33.05360 -32.04650 -31.69777 -28.16956 -27.01072 -25.96017 -25.50311 -24.30255 -21.91033 -21.18234 -19.54564 -18.79667 -18.02128 -17.46885 -17.05926 -16.37077 -15.46706 -15.27152 -15.06538 -14.66735 -14.53863 -14.33737 -14.06976 -13.76852 -13.55179 -13.22873 -13.03418 -12.69986 -12.52481 -12.18432 -11.81835 -11.69062 -11.59011 -11.28063 -11.11444 -11.04772 -10.97733 -10.92615 -10.82925 -10.65555 -10.50460 -10.34986 -10.31910 -10.19200 -10.08281 -9.96577 -9.67684 -8.97718 -8.67461 -8.52337 -8.07739 -6.16136 -4.30812 1.15360 3.30577 3.39098 3.45139 3.46605 4.13513 4.39428 4.61394 4.75960 4.79631 4.92300 4.99887 5.14447 5.16288 5.23405 5.24937 5.33868 5.37291 5.43753 5.59669 5.63651 5.78717 5.79075 5.83585 5.89491 5.98006 6.05190 6.11734 6.14028 6.26471 6.30814 6.36175 6.37737 6.48779 6.59497 6.62346 6.71008 6.92581 6.99343 7.19787 7.41842 7.51178 7.78228 8.18815 8.78314 9.46067 10.91378 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017329 B = 0.005018 C = 0.004375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.437997 B = 5578.910158 C = 6398.545692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 C 0.086 3.914 4 O -0.569 6.569 5 C -0.099 4.099 6 C -0.135 4.135 7 C 0.117 3.883 8 N -1.010 6.010 9 S 2.623 3.377 10 O -0.940 6.940 11 O -0.971 6.971 12 C -0.561 4.561 13 C 0.048 3.952 14 C -0.540 4.540 15 H 0.069 0.931 16 C 0.096 3.904 17 N -0.868 5.868 18 Si 0.892 3.108 19 H -0.268 1.268 20 H -0.277 1.277 21 H -0.282 1.282 22 C -0.141 4.141 23 C -0.205 4.205 24 C 0.129 3.871 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.375 0.625 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.125 0.875 39 H 0.264 0.736 40 H 0.065 0.935 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.068 0.932 44 H 0.063 0.937 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.039 5.746 13.613 15.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.072 4.072 3 C 0.008 3.992 4 O -0.373 6.373 5 C -0.137 4.137 6 C -0.174 4.174 7 C -0.009 4.009 8 N -0.846 5.846 9 S 2.721 3.279 10 O -0.930 6.930 11 O -0.962 6.962 12 C -0.693 4.693 13 C 0.045 3.955 14 C -0.577 4.577 15 H 0.087 0.913 16 C -0.111 4.111 17 N -0.502 5.502 18 Si 0.719 3.281 19 H -0.192 1.192 20 H -0.203 1.203 21 H -0.208 1.208 22 C -0.180 4.180 23 C -0.242 4.242 24 C 0.002 3.998 25 H 0.076 0.924 26 H 0.078 0.922 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.222 0.778 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.143 0.857 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.082 0.918 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.917 5.207 13.486 15.270 hybrid contribution 0.433 0.850 -0.838 1.270 sum 5.350 6.057 12.649 15.010 Atomic orbital electron populations 1.21808 0.93462 1.02196 1.02060 1.20860 0.97414 0.92787 0.96161 1.22149 0.96929 0.92575 0.87549 1.86470 1.77544 1.28675 1.44639 1.21432 0.99772 0.95084 0.97395 1.21859 1.02036 0.95986 0.97499 1.21283 0.99686 0.95433 0.84489 1.58197 1.76280 1.18076 1.32002 1.04746 0.75998 0.74197 0.72991 1.93513 1.69808 1.53822 1.75849 1.93461 1.69658 1.58066 1.74997 1.30041 1.15961 1.10994 1.12296 1.18215 0.96336 0.86963 0.93947 1.20633 0.90494 1.28758 1.17829 0.91288 1.24905 0.96359 0.94586 0.95280 1.69975 1.24455 1.27099 1.28685 0.86519 0.83765 0.79049 0.78808 1.19172 1.20301 1.20815 1.22499 0.94963 1.04502 0.96004 1.23148 1.03073 0.96852 1.01153 1.21302 0.99288 0.80814 0.98349 0.92352 0.92167 0.92296 0.93625 0.93188 0.77841 0.92306 0.91175 0.91168 0.90997 0.88966 0.92081 0.88661 0.85686 0.92629 0.91692 0.89540 0.89687 0.91324 0.91850 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.84 37.16 0.29 -1.72 16 2 C -0.07 -0.89 0.60 -154.39 -0.09 -0.99 16 3 C 0.09 0.90 5.92 37.16 0.22 1.12 16 4 O -0.57 -5.67 12.29 -35.23 -0.43 -6.10 16 5 C -0.10 -1.13 4.59 -26.69 -0.12 -1.25 16 6 C -0.13 -1.61 5.72 -26.83 -0.15 -1.76 16 7 C 0.12 1.56 6.40 -3.93 -0.03 1.54 16 8 N -1.01 -16.19 2.67 -113.77 -0.30 -16.49 16 9 S 2.62 55.67 4.61 -107.50 -0.50 55.17 16 10 O -0.94 -22.95 15.80 -57.54 -0.91 -23.86 16 11 O -0.97 -22.54 16.58 -57.54 -0.95 -23.49 16 12 C -0.56 -11.90 6.29 37.16 0.23 -11.67 16 13 C 0.05 1.17 1.69 -155.62 -0.26 0.91 16 14 C -0.54 -14.94 6.97 -34.44 -0.24 -15.18 16 15 H 0.07 1.97 7.82 -52.49 -0.41 1.56 16 16 C 0.10 2.65 5.38 -17.82 -0.10 2.55 16 17 N -0.87 -24.06 12.81 55.43 0.71 -23.35 16 18 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 C -0.14 -3.24 9.31 -26.73 -0.25 -3.49 16 23 C -0.21 -4.51 9.88 -26.69 -0.26 -4.77 16 24 C 0.13 1.82 5.11 -3.71 -0.02 1.80 16 25 H 0.06 0.93 5.97 -51.93 -0.31 0.62 16 26 H 0.06 0.82 7.68 -51.93 -0.40 0.42 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.38 2.04 9.12 45.56 0.42 2.45 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.81 7.65 -51.93 -0.40 0.41 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.95 6.34 -51.93 -0.33 0.62 16 35 H 0.09 1.30 6.85 -51.93 -0.36 0.95 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.09 1.69 7.95 -51.92 -0.41 1.28 16 38 H 0.12 2.67 8.14 -51.92 -0.42 2.25 16 39 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 40 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 42 H 0.08 1.85 8.14 -51.93 -0.42 1.43 16 43 H 0.07 1.33 8.09 -51.93 -0.42 0.91 16 44 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 45 H 0.10 1.53 6.86 -51.93 -0.36 1.18 16 LS Contribution 363.55 15.07 5.48 5.48 Total: -1.00 -33.18 363.55 -9.47 -42.65 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -6.76 Total: 6.00 kcal Atomic # 6 Polarization: -32.14 SS G_CDS: -0.78 Total: -32.92 kcal Atomic # 7 Polarization: -40.25 SS G_CDS: 0.41 Total: -39.85 kcal Atomic # 8 Polarization: -51.16 SS G_CDS: -2.30 Total: -53.46 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 55.67 SS G_CDS: -0.50 Total: 55.17 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.18 -9.47 -42.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649873185.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.932 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds