Wall clock time and date at job start Tue Mar 31 2020 11:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38298 * 119.91951 * 2 1 4 4 C 1.38096 * 120.07250 * 179.97438 * 3 2 1 5 5 C 1.38932 * 119.92451 * 0.02562 * 4 3 2 6 6 N 1.39725 * 120.07571 * 179.97438 * 5 4 3 7 7 C 1.34770 * 119.99745 * 33.01582 * 6 5 4 8 8 O 1.21373 * 120.00325 * 5.16121 * 7 6 5 9 9 C 1.49358 * 119.99765 * 185.16006 * 7 6 5 10 10 O 1.21361 * 119.99708 * 359.97438 * 9 7 6 11 11 N 1.34773 * 120.00157 * 180.02562 * 9 7 6 12 12 C 1.46495 * 120.00268 * 179.97438 * 11 9 7 13 13 H 1.09000 * 112.84963 * 27.13162 * 12 11 9 14 14 C 1.53780 * 113.61458 * 158.32784 * 12 11 9 15 15 C 1.53773 * 87.08153 * 89.20376 * 14 12 11 16 16 H 1.09003 * 113.61423 * 140.06669 * 15 14 12 17 17 N 1.46503 * 113.61132 * 270.88341 * 15 14 12 18 18 C 1.36940 * 119.99899 * 275.78982 * 17 15 14 19 19 H 1.08000 * 120.00283 * 359.72699 * 18 17 15 20 20 C 1.38813 * 120.00072 * 179.72497 * 18 17 15 21 21 N 1.31617 * 119.99585 * 0.02562 * 20 18 17 22 22 Si 1.86794 * 120.00037 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47071 * 60.00431 * 22 20 18 24 24 H 1.48497 * 109.47300 * 179.97438 * 22 20 18 25 25 H 1.48490 * 109.47617 * 300.00322 * 22 20 18 26 26 C 1.53780 * 113.69484 * 255.86491 * 12 11 9 27 27 C 1.38927 * 119.84834 * 0.25257 * 5 4 3 28 28 C 1.38098 * 119.92416 * 359.49074 * 27 5 4 29 29 H 1.08995 * 109.47866 * 89.99860 * 1 2 3 30 30 H 1.09004 * 109.46914 * 209.99990 * 1 2 3 31 31 H 1.09000 * 109.47280 * 329.99295 * 1 2 3 32 32 H 1.07994 * 119.96335 * 0.02562 * 3 2 1 33 33 H 1.08001 * 120.04024 * 180.02562 * 4 3 2 34 34 H 0.97004 * 119.99544 * 213.01381 * 6 5 4 35 35 H 0.97001 * 119.99712 * 359.97438 * 11 9 7 36 36 H 1.08995 * 113.61494 * 334.64674 * 14 12 11 37 37 H 1.09006 * 113.61425 * 203.75364 * 14 12 11 38 38 H 0.96996 * 119.99954 * 95.52274 * 17 15 14 39 39 H 0.97006 * 119.99914 * 179.97438 * 21 20 18 40 40 H 1.08999 * 113.61845 * 156.32402 * 26 12 11 41 41 H 1.08997 * 113.61317 * 25.41663 * 26 12 11 42 42 H 1.07998 * 120.03924 * 179.75137 * 27 5 4 43 43 H 1.08001 * 119.96785 * 180.25559 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1987 0.0000 4 6 3.5778 1.2024 0.0005 5 6 4.2741 0.0001 0.0005 6 7 5.6713 0.0001 0.0005 7 6 6.3451 0.9789 0.6365 8 8 5.7419 1.8069 1.2873 9 6 7.8341 1.0445 0.5404 10 8 8.4372 0.2162 -0.1100 11 7 8.5080 2.0229 1.1767 12 6 9.9686 2.0870 1.0829 13 1 10.3535 1.6446 0.1641 14 6 10.5446 3.4806 1.3841 15 6 10.6072 3.0497 2.8589 16 1 11.5070 3.3858 3.3742 17 7 9.3814 3.3389 3.6072 18 6 9.1875 4.5811 4.1501 19 1 9.9403 5.3462 4.0303 20 6 8.0235 4.8569 4.8542 21 7 7.1064 3.9243 5.0006 22 14 7.7595 6.5511 5.5953 23 1 7.7763 7.5714 4.5164 24 1 6.4479 6.5884 6.2906 25 1 8.8439 6.8408 6.5674 26 6 10.6911 1.6008 2.3504 27 6 3.5779 -1.2021 -0.0053 28 6 2.1969 -1.1986 -0.0005 29 1 -0.3635 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8899 0.5139 32 1 1.6549 2.1328 0.0004 33 1 4.1159 2.1387 0.0010 34 1 6.1563 -0.7043 -0.4572 35 1 8.0259 2.6847 1.6969 36 1 9.8429 4.2931 1.1959 37 1 11.5240 3.6541 0.9379 38 1 8.7053 2.6517 3.7149 39 1 6.2931 4.1169 5.4930 40 1 11.7105 1.2603 2.1685 41 1 10.1076 0.8958 2.9424 42 1 4.1160 -2.1385 -0.0094 43 1 1.6550 -2.1328 -0.0008 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690366889.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:06 Heat of formation + Delta-G solvation = -23.915302 kcal Electronic energy + Delta-G solvation = -26008.031994 eV Core-core repulsion = 22246.534885 eV Total energy + Delta-G solvation = -3761.497109 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.22606 -40.95857 -39.80016 -39.03951 -36.46731 -35.46881 -34.12011 -32.56226 -31.94204 -31.79745 -28.15223 -26.80108 -26.37781 -25.69125 -24.15963 -23.66505 -22.25197 -21.36158 -20.49425 -19.71107 -19.15236 -18.47441 -17.77501 -17.23870 -16.79146 -16.51078 -16.37514 -16.11667 -15.90445 -15.53104 -15.15071 -15.09566 -14.88145 -14.68648 -14.57994 -14.36083 -13.43806 -13.36981 -13.28596 -13.15246 -13.00048 -12.96022 -12.75504 -12.58301 -12.38804 -12.20351 -12.05409 -11.95328 -11.70877 -11.35936 -11.11483 -10.86377 -10.75031 -10.18010 -9.92493 -9.06939 -8.99939 -7.92597 -5.22646 -0.11047 0.41532 0.55040 1.19198 1.47543 1.49764 1.55916 1.99136 2.49868 2.57578 2.79072 3.27226 3.39583 3.64910 3.79069 3.88750 3.93968 3.98973 4.07923 4.18131 4.36187 4.37076 4.44814 4.47879 4.74579 4.81884 4.87962 4.89074 4.94791 5.02135 5.03872 5.10454 5.23146 5.24594 5.29907 5.33601 5.40498 5.46093 5.59642 5.66486 5.90352 6.03483 6.26913 6.28481 6.62132 6.82055 7.34083 8.09096 8.30843 9.28953 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011793 B = 0.003641 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2373.661169 B = 7687.909955 C = 9681.796021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.103 4.103 3 C -0.113 4.113 4 C -0.140 4.140 5 C 0.114 3.886 6 N -0.632 5.632 7 C 0.500 3.500 8 O -0.517 6.517 9 C 0.513 3.487 10 O -0.537 6.537 11 N -0.671 5.671 12 C 0.119 3.881 13 H 0.113 0.887 14 C -0.161 4.161 15 C 0.140 3.860 16 H 0.059 0.941 17 N -0.723 5.723 18 C -0.242 4.242 19 H 0.079 0.921 20 C -0.070 4.070 21 N -0.962 5.962 22 Si 0.969 3.031 23 H -0.279 1.279 24 H -0.301 1.301 25 H -0.277 1.277 26 C -0.146 4.146 27 C -0.134 4.134 28 C -0.101 4.101 29 H 0.083 0.917 30 H 0.081 0.919 31 H 0.067 0.933 32 H 0.134 0.866 33 H 0.109 0.891 34 H 0.431 0.569 35 H 0.415 0.585 36 H 0.054 0.946 37 H 0.124 0.876 38 H 0.372 0.628 39 H 0.248 0.752 40 H 0.131 0.869 41 H 0.051 0.949 42 H 0.153 0.847 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.856 -11.385 -14.222 19.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.103 4.103 3 C -0.132 4.132 4 C -0.160 4.160 5 C 0.021 3.979 6 N -0.280 5.280 7 C 0.282 3.718 8 O -0.391 6.391 9 C 0.293 3.707 10 O -0.416 6.416 11 N -0.323 5.323 12 C 0.015 3.985 13 H 0.131 0.869 14 C -0.202 4.202 15 C 0.031 3.969 16 H 0.077 0.923 17 N -0.363 5.363 18 C -0.374 4.374 19 H 0.097 0.903 20 C -0.263 4.263 21 N -0.612 5.612 22 Si 0.798 3.202 23 H -0.205 1.205 24 H -0.228 1.228 25 H -0.203 1.203 26 C -0.185 4.185 27 C -0.154 4.154 28 C -0.119 4.119 29 H 0.102 0.898 30 H 0.100 0.900 31 H 0.086 0.914 32 H 0.152 0.848 33 H 0.127 0.873 34 H 0.271 0.729 35 H 0.254 0.746 36 H 0.072 0.928 37 H 0.142 0.858 38 H 0.205 0.795 39 H 0.057 0.943 40 H 0.149 0.851 41 H 0.070 0.930 42 H 0.171 0.829 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.746 -11.158 -14.141 18.907 hybrid contribution -0.442 0.988 0.851 1.377 sum -6.188 -10.170 -13.290 17.842 Atomic orbital electron populations 1.20823 0.88850 1.03672 1.03324 1.20336 0.97900 0.92619 0.99478 1.21134 0.92747 0.99248 1.00068 1.21178 0.95476 0.97177 1.02190 1.17972 0.81622 0.95228 1.03083 1.42999 1.05110 1.27768 1.52090 1.20476 0.89031 0.82477 0.79854 1.90901 1.69993 1.39656 1.38580 1.19812 0.87608 0.82587 0.80667 1.90699 1.69708 1.39482 1.41668 1.45910 1.08506 1.29099 1.48745 1.22070 0.77667 0.99158 0.99644 0.86888 1.23982 1.01989 0.94819 0.99383 1.21553 0.89522 0.94752 0.91114 0.92270 1.42406 1.19166 1.12108 1.62655 1.19505 1.01536 0.90451 1.25860 0.90295 1.25515 0.97173 1.01086 1.02494 1.69817 1.09646 1.34346 1.47374 0.85285 0.76354 0.80250 0.78276 1.20487 1.22775 1.20340 1.23712 1.02337 0.96341 0.96102 1.21209 0.95226 0.96222 1.02751 1.21238 0.92907 0.98854 0.98932 0.89828 0.90036 0.91431 0.84792 0.87318 0.72891 0.74640 0.92761 0.85757 0.79529 0.94275 0.85121 0.93026 0.82927 0.82271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 10.01 71.24 0.71 -0.72 16 2 C -0.10 -2.03 5.88 -19.84 -0.12 -2.14 16 3 C -0.11 -2.82 9.69 22.25 0.22 -2.60 16 4 C -0.14 -4.25 8.66 22.40 0.19 -4.06 16 5 C 0.11 3.14 6.28 38.21 0.24 3.38 16 6 N -0.63 -17.59 5.32 -304.84 -1.62 -19.22 16 7 C 0.50 17.68 7.63 87.24 0.67 18.35 16 8 O -0.52 -22.43 14.13 -3.32 -0.05 -22.47 16 9 C 0.51 17.96 7.89 87.24 0.69 18.65 16 10 O -0.54 -18.37 16.13 -3.28 -0.05 -18.43 16 11 N -0.67 -24.55 4.96 -441.48 -2.19 -26.74 16 12 C 0.12 3.69 4.27 45.52 0.19 3.88 16 13 H 0.11 3.12 7.55 -2.39 -0.02 3.10 16 14 C -0.16 -4.99 7.61 31.12 0.24 -4.75 16 15 C 0.14 5.14 4.53 45.51 0.21 5.35 16 16 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 17 N -0.72 -35.16 4.37 -320.45 -1.40 -36.56 16 18 C -0.24 -13.09 9.99 84.03 0.84 -12.25 16 19 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 20 C -0.07 -3.98 5.50 84.86 0.47 -3.52 16 21 N -0.96 -59.45 13.06 21.65 0.28 -59.16 16 22 Si 0.97 46.43 29.55 68.60 2.03 48.46 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 24 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 25 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 26 C -0.15 -4.45 7.58 31.12 0.24 -4.21 16 27 C -0.13 -2.77 9.96 22.40 0.22 -2.55 16 28 C -0.10 -1.80 9.69 22.25 0.22 -1.59 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 31 H 0.07 0.88 8.08 -2.39 -0.02 0.86 16 32 H 0.13 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.11 3.83 6.39 -2.91 -0.02 3.81 16 34 H 0.43 9.59 8.29 -92.71 -0.77 8.82 16 35 H 0.42 17.93 6.69 -92.71 -0.62 17.31 16 36 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 37 H 0.12 2.88 8.14 -2.38 -0.02 2.86 16 38 H 0.37 19.87 7.07 -92.71 -0.66 19.21 16 39 H 0.25 15.20 8.31 -92.70 -0.77 14.43 16 40 H 0.13 2.95 8.14 -2.39 -0.02 2.93 16 41 H 0.05 1.79 8.13 -2.39 -0.02 1.77 16 42 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 43 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -70.71 365.33 1.24 -69.47 By element: Atomic # 1 Polarization: 54.41 SS G_CDS: -0.98 Total: 53.43 kcal Atomic # 6 Polarization: 6.00 SS G_CDS: 5.22 Total: 11.22 kcal Atomic # 7 Polarization: -136.75 SS G_CDS: -4.93 Total: -141.68 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -0.10 Total: -40.90 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -70.71 1.24 -69.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690366889.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.559 kcal (2) G-P(sol) polarization free energy of solvation -70.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds