Wall clock time and date at job start Tue Mar 31 2020 11:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 119.99955 * 2 1 4 4 H 1.48501 * 109.47060 * 269.99540 * 3 2 1 5 5 H 1.48492 * 109.47333 * 29.99621 * 3 2 1 6 6 H 1.48497 * 109.47170 * 149.99983 * 3 2 1 7 7 C 1.38815 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00130 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99975 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46981 * 174.63090 * 10 9 7 12 12 H 1.08996 * 109.58748 * 317.41094 * 11 10 9 13 13 C 1.53197 * 109.69940 * 197.05750 * 11 10 9 14 14 C 1.53041 * 109.30974 * 185.51015 * 13 11 10 15 15 C 1.53351 * 109.60886 * 61.37055 * 14 13 11 16 16 C 1.53184 * 109.15149 * 298.71152 * 15 14 13 17 17 N 1.46923 * 109.58732 * 77.70000 * 11 10 9 18 18 C 1.34782 * 120.63014 * 353.55217 * 17 11 10 19 19 O 1.21721 * 119.99893 * 353.05126 * 18 17 11 20 20 C 1.46487 * 119.99794 * 173.04785 * 18 17 11 21 21 C 1.37783 * 125.85768 * 154.74288 * 20 18 17 22 22 C 1.39933 * 107.69069 * 179.97438 * 21 20 18 23 23 O 1.35117 * 145.14334 * 179.97438 * 22 21 20 24 24 C 1.34384 * 109.62560 * 180.02562 * 23 22 21 25 25 C 1.34461 * 109.44591 * 0.02562 * 24 23 22 26 26 C 1.39143 * 107.39886 * 0.02562 * 22 21 20 27 27 N 1.37110 * 108.11090 * 359.77124 * 26 22 21 28 28 H 0.97000 * 125.73823 * 180.22761 * 27 26 22 29 29 H 0.97004 * 120.00131 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00359 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46734 * 54.62901 * 10 9 7 32 32 H 1.08997 * 109.46956 * 294.63361 * 10 9 7 33 33 H 1.08999 * 109.49656 * 305.45987 * 13 11 10 34 34 H 1.08990 * 109.50035 * 65.52594 * 13 11 10 35 35 H 1.08992 * 109.46201 * 181.38639 * 14 13 11 36 36 H 1.09007 * 109.45894 * 301.35812 * 14 13 11 37 37 H 1.09005 * 109.68041 * 178.74626 * 15 14 13 38 38 H 1.09004 * 109.47095 * 58.55297 * 15 14 13 39 39 H 1.09005 * 109.59073 * 294.72093 * 16 15 14 40 40 H 1.08999 * 109.59039 * 174.43151 * 16 15 14 41 41 H 1.08003 * 126.15467 * 359.94488 * 21 20 18 42 42 H 1.07997 * 125.27903 * 180.02562 * 24 23 22 43 43 H 1.08004 * 126.41666 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5476 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0693 -4.8165 0.1355 12 1 0.3158 -4.5692 0.8832 13 6 1.8161 -6.0852 0.5593 14 6 0.8452 -7.2682 0.5583 15 6 0.2952 -7.4815 -0.8572 16 6 -0.4668 -6.2267 -1.2946 17 7 0.4177 -5.0613 -1.1583 18 6 0.6274 -4.2328 -2.2005 19 8 1.2586 -3.2040 -2.0427 20 6 0.0958 -4.5704 -3.5231 21 6 -0.2074 -3.6735 -4.5241 22 6 -0.6853 -4.4031 -5.6184 23 8 -1.1586 -4.3251 -6.8815 24 6 -1.4370 -5.5587 -7.3362 25 6 -1.1525 -6.4623 -6.3820 26 6 -0.6659 -5.7481 -5.2622 27 7 -0.1830 -5.8431 -3.9825 28 1 -0.0596 -6.6655 -3.4831 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.7549 -3.6740 0.8385 32 1 2.6107 -3.7573 -0.9336 33 1 2.6281 -6.2805 -0.1411 34 1 2.2243 -5.9498 1.5608 35 1 1.3682 -8.1676 0.8832 36 1 0.0203 -7.0615 1.2403 37 1 -0.3794 -8.3376 -0.8638 38 1 1.1215 -7.6635 -1.5444 39 1 -1.3456 -6.0942 -0.6635 40 1 -0.7761 -6.3309 -2.3346 41 1 -0.0967 -2.6004 -4.4732 42 1 -1.8286 -5.7887 -8.3160 43 1 -1.2724 -7.5330 -6.4567 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713262307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:29 Heat of formation + Delta-G solvation = 98.747540 kcal Electronic energy + Delta-G solvation = -27414.067159 eV Core-core repulsion = 23657.889110 eV Total energy + Delta-G solvation = -3756.178049 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.89335 -40.56271 -38.84246 -37.03117 -34.45520 -32.82269 -32.31484 -32.02978 -30.58054 -29.75380 -28.24047 -26.19040 -24.54510 -23.60052 -22.69503 -21.50978 -21.23540 -20.59077 -20.47592 -19.09952 -17.82010 -17.20690 -16.55694 -16.20273 -15.84978 -15.51212 -14.83122 -14.75363 -14.41270 -14.21659 -13.92478 -13.75487 -13.59552 -13.31510 -13.23140 -12.91533 -12.80176 -12.45514 -12.36984 -12.06544 -11.76860 -11.63517 -11.15875 -11.00956 -10.74672 -10.67937 -10.65150 -10.35193 -10.02990 -9.86057 -9.48556 -8.80833 -8.64073 -8.50015 -8.17499 -7.75979 -6.53277 -5.51568 -2.72474 1.17316 2.36361 2.55812 2.73429 2.91061 3.30279 3.58490 3.63406 3.64326 3.72264 4.49904 4.58717 4.64383 4.72993 4.78400 4.85086 4.99601 5.08533 5.23257 5.29626 5.30847 5.46310 5.51947 5.58141 5.67857 5.71964 5.81700 5.84519 5.91962 5.94941 5.97524 6.08191 6.22521 6.27615 6.39916 6.50390 6.59467 6.70975 6.88859 7.19210 7.22596 7.34483 7.74301 7.90924 8.65611 8.69853 9.78035 10.37819 10.72598 11.72311 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011019 B = 0.004893 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.406459 B = 5721.600986 C = 7930.455524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.020 4.020 3 Si 0.901 3.099 4 H -0.293 1.293 5 H -0.295 1.295 6 H -0.285 1.285 7 C -0.210 4.210 8 H 0.065 0.935 9 N -0.700 5.700 10 C 0.157 3.843 11 C 0.144 3.856 12 H 0.073 0.927 13 C -0.128 4.128 14 C -0.117 4.117 15 C -0.139 4.139 16 C 0.087 3.913 17 N -0.611 5.611 18 C 0.548 3.452 19 O -0.422 6.422 20 C 0.031 3.969 21 C -0.092 4.092 22 C -0.033 4.033 23 O -0.169 6.169 24 C 0.000 4.000 25 C -0.201 4.201 26 C -0.011 4.011 27 N -0.539 5.539 28 H 0.421 0.579 29 H 0.250 0.750 30 H 0.380 0.620 31 H 0.019 0.981 32 H 0.040 0.960 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.161 0.839 42 H 0.208 0.792 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.299 -21.423 -8.227 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.214 4.214 3 Si 0.734 3.266 4 H -0.221 1.221 5 H -0.221 1.221 6 H -0.211 1.211 7 C -0.342 4.342 8 H 0.083 0.917 9 N -0.343 5.343 10 C 0.029 3.971 11 C 0.041 3.959 12 H 0.091 0.909 13 C -0.166 4.166 14 C -0.154 4.154 15 C -0.177 4.177 16 C -0.037 4.037 17 N -0.348 5.348 18 C 0.333 3.667 19 O -0.289 6.289 20 C -0.081 4.081 21 C -0.119 4.119 22 C -0.085 4.085 23 O -0.066 6.066 24 C -0.068 4.068 25 C -0.222 4.222 26 C -0.122 4.122 27 N -0.150 5.150 28 H 0.265 0.735 29 H 0.060 0.940 30 H 0.214 0.786 31 H 0.036 0.964 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.090 0.910 40 H 0.103 0.897 41 H 0.178 0.822 42 H 0.225 0.775 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -2.769 -20.510 -8.175 22.252 hybrid contribution -0.032 0.148 0.027 0.154 sum -2.801 -20.362 -8.148 22.109 Atomic orbital electron populations 1.69655 1.04980 1.24960 1.59158 1.24608 0.95402 0.97200 1.04233 0.86252 0.78515 0.84505 0.77371 1.22064 1.22146 1.21082 1.19150 0.90717 0.84276 1.40087 0.91712 1.42181 1.05316 0.99469 1.87298 1.20933 0.92928 0.85047 0.98164 1.21553 0.95454 0.95336 0.83568 0.90861 1.21926 0.98237 0.94277 1.02196 1.21536 0.99346 0.98366 0.96184 1.22045 1.00263 0.97199 0.98190 1.22123 0.93450 0.85680 1.02431 1.47803 1.48174 1.27039 1.11826 1.17061 0.83275 0.84626 0.81774 1.91355 1.35067 1.21095 1.81336 1.20797 1.08770 0.82130 0.96446 1.19993 1.04782 0.99732 0.87382 1.19356 1.08768 0.94451 0.85897 1.84013 1.67282 1.30147 1.25173 1.23955 1.02670 0.80448 0.99716 1.20478 1.10051 1.00184 0.91511 1.19076 1.08562 0.95894 0.88684 1.42095 1.54025 1.08019 1.10906 0.73499 0.94005 0.78616 0.96363 0.94311 0.91558 0.90479 0.91807 0.91605 0.90826 0.91738 0.91022 0.89742 0.82162 0.77525 0.83284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -29.87 13.06 55.49 0.72 -29.15 16 2 C -0.02 -0.60 5.50 -17.43 -0.10 -0.70 16 3 Si 0.90 23.83 29.55 -169.99 -5.02 18.81 16 4 H -0.29 -7.79 7.11 56.52 0.40 -7.39 16 5 H -0.29 -7.80 7.11 56.52 0.40 -7.39 16 6 H -0.28 -7.29 7.11 56.52 0.40 -6.89 16 7 C -0.21 -6.24 9.84 -15.06 -0.15 -6.39 16 8 H 0.06 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.70 -18.66 3.37 -59.91 -0.20 -18.86 16 10 C 0.16 3.33 4.93 -4.04 -0.02 3.31 16 11 C 0.14 2.33 2.89 -67.60 -0.20 2.14 16 12 H 0.07 1.26 8.13 -51.93 -0.42 0.84 16 13 C -0.13 -1.54 5.31 -26.61 -0.14 -1.68 16 14 C -0.12 -1.08 5.89 -26.53 -0.16 -1.24 16 15 C -0.14 -1.17 6.02 -26.45 -0.16 -1.33 16 16 C 0.09 0.96 5.86 -3.71 -0.02 0.94 16 17 N -0.61 -9.42 2.97 -166.82 -0.50 -9.91 16 18 C 0.55 10.28 7.33 -12.94 -0.09 10.18 16 19 O -0.42 -10.06 11.06 5.17 0.06 -10.00 16 20 C 0.03 0.51 6.42 -81.86 -0.53 -0.02 16 21 C -0.09 -1.61 10.67 -39.11 -0.42 -2.03 16 22 C -0.03 -0.52 8.20 -38.61 -0.32 -0.83 16 23 O -0.17 -2.38 10.68 3.20 0.03 -2.34 16 24 C 0.00 0.00 12.02 29.40 0.35 0.35 16 25 C -0.20 -2.06 10.89 -39.69 -0.43 -2.49 16 26 C -0.01 -0.14 8.11 -83.95 -0.68 -0.82 16 27 N -0.54 -6.94 4.88 -7.04 -0.03 -6.97 16 28 H 0.42 4.17 6.29 -40.82 -0.26 3.91 16 29 H 0.25 7.75 8.31 -40.82 -0.34 7.41 16 30 H 0.38 10.83 7.52 -40.82 -0.31 10.52 16 31 H 0.02 0.39 8.03 -51.93 -0.42 -0.03 16 32 H 0.04 0.90 6.03 -51.93 -0.31 0.59 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.87 3.45 -51.94 -0.18 0.69 16 41 H 0.16 2.94 8.06 -52.48 -0.42 2.52 16 42 H 0.21 1.00 8.06 -52.49 -0.42 0.58 16 43 H 0.15 1.05 8.06 -52.48 -0.42 0.63 16 LS Contribution 343.53 15.07 5.18 5.18 Total: -1.00 -36.27 343.53 -8.48 -44.75 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.67 Total: 9.10 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -3.05 Total: -0.60 kcal Atomic # 7 Polarization: -64.88 SS G_CDS: -0.01 Total: -64.89 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: 0.09 Total: -12.34 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.02 Total: 18.81 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -36.27 -8.48 -44.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713262307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.500 kcal (2) G-P(sol) polarization free energy of solvation -36.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds