Wall clock time and date at job start Tue Mar 31 2020 11:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 119.99955 * 2 1 4 4 H 1.48501 * 109.47060 * 269.99540 * 3 2 1 5 5 H 1.48492 * 109.47333 * 29.99621 * 3 2 1 6 6 H 1.48497 * 109.47170 * 149.99983 * 3 2 1 7 7 C 1.38815 * 120.00265 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00130 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99710 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99975 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46981 * 174.63090 * 10 9 7 12 12 H 1.08996 * 109.58748 * 317.41094 * 11 10 9 13 13 C 1.53197 * 109.69940 * 197.05750 * 11 10 9 14 14 C 1.53041 * 109.30974 * 185.51015 * 13 11 10 15 15 C 1.53351 * 109.60886 * 61.37055 * 14 13 11 16 16 C 1.53184 * 109.15149 * 298.71152 * 15 14 13 17 17 N 1.46923 * 109.58732 * 77.70000 * 11 10 9 18 18 C 1.34782 * 120.63014 * 353.55217 * 17 11 10 19 19 O 1.21721 * 119.99893 * 353.05126 * 18 17 11 20 20 C 1.46487 * 119.99794 * 173.04785 * 18 17 11 21 21 C 1.37783 * 125.85768 * 154.74288 * 20 18 17 22 22 C 1.39933 * 107.69069 * 179.97438 * 21 20 18 23 23 O 1.35117 * 145.14334 * 179.97438 * 22 21 20 24 24 C 1.34384 * 109.62560 * 180.02562 * 23 22 21 25 25 C 1.34461 * 109.44591 * 0.02562 * 24 23 22 26 26 C 1.39143 * 107.39886 * 0.02562 * 22 21 20 27 27 N 1.37110 * 108.11090 * 359.77124 * 26 22 21 28 28 H 0.97000 * 125.73823 * 180.22761 * 27 26 22 29 29 H 0.97004 * 120.00131 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00359 * 359.97438 * 9 7 2 31 31 H 1.08997 * 109.46734 * 54.62901 * 10 9 7 32 32 H 1.08997 * 109.46956 * 294.63361 * 10 9 7 33 33 H 1.08999 * 109.49656 * 305.45987 * 13 11 10 34 34 H 1.08990 * 109.50035 * 65.52594 * 13 11 10 35 35 H 1.08992 * 109.46201 * 181.38639 * 14 13 11 36 36 H 1.09007 * 109.45894 * 301.35812 * 14 13 11 37 37 H 1.09005 * 109.68041 * 178.74626 * 15 14 13 38 38 H 1.09004 * 109.47095 * 58.55297 * 15 14 13 39 39 H 1.09005 * 109.59073 * 294.72093 * 16 15 14 40 40 H 1.08999 * 109.59039 * 174.43151 * 16 15 14 41 41 H 1.08003 * 126.15467 * 359.94488 * 21 20 18 42 42 H 1.07997 * 125.27903 * 180.02562 * 24 23 22 43 43 H 1.08004 * 126.41666 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5476 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0693 -4.8165 0.1355 12 1 0.3158 -4.5692 0.8832 13 6 1.8161 -6.0852 0.5593 14 6 0.8452 -7.2682 0.5583 15 6 0.2952 -7.4815 -0.8572 16 6 -0.4668 -6.2267 -1.2946 17 7 0.4177 -5.0613 -1.1583 18 6 0.6274 -4.2328 -2.2005 19 8 1.2586 -3.2040 -2.0427 20 6 0.0958 -4.5704 -3.5231 21 6 -0.2074 -3.6735 -4.5241 22 6 -0.6853 -4.4031 -5.6184 23 8 -1.1586 -4.3251 -6.8815 24 6 -1.4370 -5.5587 -7.3362 25 6 -1.1525 -6.4623 -6.3820 26 6 -0.6659 -5.7481 -5.2622 27 7 -0.1830 -5.8431 -3.9825 28 1 -0.0596 -6.6655 -3.4831 29 1 -0.4850 0.8401 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.7549 -3.6740 0.8385 32 1 2.6107 -3.7573 -0.9336 33 1 2.6281 -6.2805 -0.1411 34 1 2.2243 -5.9498 1.5608 35 1 1.3682 -8.1676 0.8832 36 1 0.0203 -7.0615 1.2403 37 1 -0.3794 -8.3376 -0.8638 38 1 1.1215 -7.6635 -1.5444 39 1 -1.3456 -6.0942 -0.6635 40 1 -0.7761 -6.3309 -2.3346 41 1 -0.0967 -2.6004 -4.4732 42 1 -1.8286 -5.7887 -8.3160 43 1 -1.2724 -7.5330 -6.4567 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713262307.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:29 Heat of formation + Delta-G solvation = 73.334943 kcal Electronic energy + Delta-G solvation = -27415.169131 eV Core-core repulsion = 23657.889110 eV Total energy + Delta-G solvation = -3757.280022 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.94511 -41.82183 -40.01856 -38.30508 -36.34131 -34.04898 -33.68384 -33.24191 -31.96762 -31.30548 -29.37519 -27.68358 -26.02951 -24.67159 -24.41262 -22.63222 -22.55698 -21.69342 -21.51681 -20.30899 -19.19325 -18.74561 -17.99964 -17.30208 -17.07293 -16.77286 -16.58076 -15.93713 -15.80932 -15.31522 -15.22845 -15.07130 -14.96957 -14.68530 -14.48066 -14.32699 -13.93209 -13.77382 -13.60980 -13.45154 -13.15177 -12.79399 -12.78925 -12.69347 -12.15419 -12.10659 -11.88173 -11.75258 -11.54926 -11.40879 -11.06181 -10.88725 -10.28096 -9.62370 -9.56930 -8.87690 -8.68050 -7.84025 -5.04338 0.04330 1.24525 1.43226 1.47866 1.50783 1.54600 1.70875 1.72643 2.16266 2.40593 2.61865 3.43389 3.49638 3.66657 3.73931 3.84003 3.90414 3.97464 4.03039 4.25022 4.29253 4.35579 4.43981 4.51192 4.55170 4.63685 4.74074 4.78736 4.83438 4.95224 5.01323 5.03092 5.07421 5.09786 5.21856 5.26894 5.44997 5.46923 5.52844 5.58686 5.73806 6.14671 6.33444 6.37172 6.45750 7.27500 7.43767 8.23664 8.46240 9.40933 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011019 B = 0.004893 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2540.406459 B = 5721.600986 C = 7930.455524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.974 5.974 2 C -0.084 4.084 3 Si 0.967 3.033 4 H -0.297 1.297 5 H -0.293 1.293 6 H -0.269 1.269 7 C -0.213 4.213 8 H 0.063 0.937 9 N -0.708 5.708 10 C 0.158 3.842 11 C 0.148 3.852 12 H 0.063 0.937 13 C -0.119 4.119 14 C -0.113 4.113 15 C -0.130 4.130 16 C 0.080 3.920 17 N -0.604 5.604 18 C 0.549 3.451 19 O -0.492 6.492 20 C 0.014 3.986 21 C -0.117 4.117 22 C -0.076 4.076 23 O -0.191 6.191 24 C 0.020 3.980 25 C -0.205 4.205 26 C 0.008 3.992 27 N -0.516 5.516 28 H 0.437 0.563 29 H 0.245 0.755 30 H 0.366 0.634 31 H 0.021 0.979 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.131 0.869 42 H 0.261 0.739 43 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.816 -25.721 -9.326 27.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.627 5.627 2 C -0.275 4.275 3 Si 0.797 3.203 4 H -0.225 1.225 5 H -0.220 1.220 6 H -0.194 1.194 7 C -0.346 4.346 8 H 0.081 0.919 9 N -0.349 5.349 10 C 0.032 3.968 11 C 0.045 3.955 12 H 0.081 0.919 13 C -0.158 4.158 14 C -0.150 4.150 15 C -0.168 4.168 16 C -0.042 4.042 17 N -0.340 5.340 18 C 0.336 3.664 19 O -0.364 6.364 20 C -0.098 4.098 21 C -0.145 4.145 22 C -0.127 4.127 23 O -0.089 6.089 24 C -0.046 4.046 25 C -0.226 4.226 26 C -0.105 4.105 27 N -0.129 5.129 28 H 0.285 0.715 29 H 0.054 0.946 30 H 0.198 0.802 31 H 0.039 0.961 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.103 0.897 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.148 0.852 42 H 0.276 0.724 43 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -3.269 -24.922 -9.238 26.779 hybrid contribution 0.066 1.336 0.178 1.350 sum -3.203 -23.586 -9.060 25.468 Atomic orbital electron populations 1.69825 1.06463 1.25208 1.61250 1.25391 0.96324 1.00542 1.05258 0.85209 0.77847 0.80256 0.76981 1.22473 1.21998 1.19392 1.19509 0.90867 0.85811 1.38427 0.91861 1.42274 1.04684 1.00595 1.87303 1.20991 0.93892 0.84988 0.96977 1.21446 0.94517 0.95738 0.83769 0.91915 1.21885 0.98481 0.93073 1.02335 1.21548 0.98847 0.97702 0.96941 1.22058 1.00794 0.96426 0.97561 1.22463 0.93281 0.85173 1.03266 1.47910 1.47916 1.27597 1.10576 1.17426 0.81951 0.84038 0.83031 1.91311 1.38506 1.23935 1.82643 1.20223 1.10553 0.83638 0.95431 1.19900 1.06223 0.98955 0.89415 1.19295 1.11128 0.95422 0.86868 1.84016 1.67717 1.32767 1.24443 1.25160 0.99626 0.78611 1.01227 1.21000 1.09700 1.02241 0.89613 1.19612 1.06631 0.95453 0.88812 1.41887 1.52876 1.07233 1.10873 0.71544 0.94643 0.80234 0.96148 0.96078 0.91598 0.89733 0.89100 0.91328 0.87140 0.91130 0.90486 0.88995 0.85150 0.72362 0.79125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -65.24 13.06 21.65 0.28 -64.96 16 2 C -0.08 -5.34 5.50 84.86 0.47 -4.88 16 3 Si 0.97 51.00 29.55 68.60 2.03 53.03 16 4 H -0.30 -15.70 7.11 99.48 0.71 -14.99 16 5 H -0.29 -15.27 7.11 99.48 0.71 -14.56 16 6 H -0.27 -13.32 7.11 99.48 0.71 -12.61 16 7 C -0.21 -13.29 9.84 84.03 0.83 -12.46 16 8 H 0.06 3.86 7.83 -2.91 -0.02 3.83 16 9 N -0.71 -40.07 3.37 -343.45 -1.16 -41.23 16 10 C 0.16 7.07 4.93 86.38 0.43 7.50 16 11 C 0.15 4.91 2.89 44.98 0.13 5.04 16 12 H 0.06 2.22 8.13 -2.39 -0.02 2.20 16 13 C -0.12 -2.68 5.31 30.67 0.16 -2.51 16 14 C -0.11 -1.67 5.89 30.73 0.18 -1.49 16 15 C -0.13 -1.66 6.02 30.77 0.19 -1.47 16 16 C 0.08 1.61 5.86 86.36 0.51 2.12 16 17 N -0.60 -18.88 2.97 -799.90 -2.38 -21.26 16 18 C 0.55 21.88 7.33 86.39 0.63 22.51 16 19 O -0.49 -25.49 11.06 -4.41 -0.05 -25.54 16 20 C 0.01 0.49 6.42 40.19 0.26 0.75 16 21 C -0.12 -4.47 10.67 22.57 0.24 -4.23 16 22 C -0.08 -2.45 8.20 22.90 0.19 -2.26 16 23 O -0.19 -5.20 10.68 -11.47 -0.12 -5.32 16 24 C 0.02 0.32 12.02 66.96 0.80 1.12 16 25 C -0.20 -3.29 10.89 22.20 0.24 -3.05 16 26 C 0.01 0.20 8.11 39.33 0.32 0.52 16 27 N -0.52 -12.63 4.88 -176.19 -0.86 -13.49 16 28 H 0.44 7.46 6.29 -92.71 -0.58 6.87 16 29 H 0.24 15.89 8.31 -92.71 -0.77 15.12 16 30 H 0.37 22.30 7.52 -92.71 -0.70 21.60 16 31 H 0.02 0.90 8.03 -2.39 -0.02 0.88 16 32 H 0.02 1.05 6.03 -2.39 -0.01 1.04 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 38 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.08 1.51 8.14 -2.38 -0.02 1.50 16 40 H 0.09 1.69 3.45 -2.41 -0.01 1.68 16 41 H 0.13 5.54 8.06 -2.91 -0.02 5.52 16 42 H 0.26 0.97 8.06 -2.91 -0.02 0.94 16 43 H 0.19 1.46 8.06 -2.91 -0.02 1.44 16 Total: -1.00 -87.43 343.53 3.09 -84.33 By element: Atomic # 1 Polarization: 27.46 SS G_CDS: -0.22 Total: 27.23 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 5.57 Total: 7.21 kcal Atomic # 7 Polarization: -136.83 SS G_CDS: -4.11 Total: -140.94 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -0.17 Total: -30.86 kcal Atomic # 14 Polarization: 51.00 SS G_CDS: 2.03 Total: 53.03 kcal Total: -87.43 3.09 -84.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713262307.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.668 kcal (2) G-P(sol) polarization free energy of solvation -87.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds