Wall clock time and date at job start Tue Mar 31 2020 11:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00071 * 2 1 4 4 H 1.48501 * 109.46754 * 270.00132 * 3 2 1 5 5 H 1.48495 * 109.46949 * 29.99887 * 3 2 1 6 6 H 1.48495 * 109.47225 * 150.00346 * 3 2 1 7 7 C 1.38814 * 119.99838 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99872 * 157.93626 * 7 2 1 9 9 N 1.36935 * 120.00273 * 337.93463 * 7 2 1 10 10 C 1.46504 * 119.99937 * 324.92932 * 9 7 2 11 11 C 1.52993 * 109.47058 * 270.00095 * 10 9 7 12 12 C 1.53001 * 109.47105 * 179.97438 * 11 10 9 13 13 N 1.46500 * 109.47179 * 179.97438 * 12 11 10 14 14 C 1.34774 * 120.00193 * 179.97438 * 13 12 11 15 15 O 1.21725 * 119.99884 * 0.02562 * 14 13 12 16 16 C 1.46500 * 120.00193 * 179.97438 * 14 13 12 17 17 C 1.37779 * 125.85847 * 180.02562 * 16 14 13 18 18 C 1.39927 * 107.68977 * 179.97438 * 17 16 14 19 19 O 1.35117 * 145.14378 * 180.02562 * 18 17 16 20 20 C 1.34384 * 109.62433 * 179.97438 * 19 18 17 21 21 C 1.34462 * 109.44957 * 0.02562 * 20 19 18 22 22 C 1.39136 * 107.40228 * 359.97438 * 18 17 16 23 23 N 1.37111 * 108.10787 * 359.77358 * 22 18 17 24 24 H 0.97010 * 125.73985 * 180.25964 * 23 22 18 25 25 C 1.46494 * 120.00432 * 144.92717 * 9 7 2 26 26 C 1.53008 * 117.49603 * 3.23731 * 25 9 7 27 27 C 1.53005 * 117.50060 * 294.58235 * 25 9 7 28 28 H 0.96995 * 119.99672 * 356.06739 * 1 2 3 29 29 H 1.09004 * 109.46899 * 29.99431 * 10 9 7 30 30 H 1.08991 * 109.47322 * 149.99588 * 10 9 7 31 31 H 1.09002 * 109.47423 * 299.99679 * 11 10 9 32 32 H 1.09002 * 109.47930 * 59.99783 * 11 10 9 33 33 H 1.08999 * 109.47331 * 299.99413 * 12 11 10 34 34 H 1.08998 * 109.47503 * 59.99842 * 12 11 10 35 35 H 0.96999 * 120.00323 * 359.97438 * 13 12 11 36 36 H 1.08009 * 126.15541 * 359.97438 * 17 16 14 37 37 H 1.08003 * 125.27603 * 179.97438 * 20 19 18 38 38 H 1.07993 * 126.41929 * 180.02562 * 21 20 19 39 39 H 1.08998 * 115.55292 * 148.90958 * 25 9 7 40 40 H 1.09004 * 117.49709 * 0.02562 * 26 25 9 41 41 H 1.09001 * 117.49616 * 145.02232 * 26 25 9 42 42 H 1.08992 * 117.50031 * 214.97936 * 27 25 9 43 43 H 1.09007 * 117.49694 * 359.97438 * 27 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7000 6 1 3.5478 1.4402 0.6999 7 6 2.0102 -1.2022 -0.0005 8 1 3.0309 -1.2363 -0.3519 9 7 1.4008 -2.3449 0.4444 10 6 0.4456 -2.2814 1.5535 11 6 1.1887 -2.4675 2.8778 12 6 0.1912 -2.4006 4.0360 13 7 0.9027 -2.5794 5.3041 14 6 0.2226 -2.5566 6.4675 15 8 -0.9829 -2.3879 6.4645 16 6 0.9339 -2.7360 7.7355 17 6 0.3620 -2.7346 8.9890 18 6 1.3841 -2.9371 9.9230 19 8 1.6776 -3.0615 11.2360 20 6 2.9985 -3.2570 11.3867 21 6 3.5908 -3.2634 10.1795 22 6 2.5758 -3.0607 9.2155 23 7 2.2923 -2.9422 7.8792 24 1 2.9374 -2.9926 7.1565 25 6 1.7039 -3.6308 -0.1884 26 6 2.7654 -3.6431 -1.2903 27 6 1.2873 -3.8150 -1.6491 28 1 -0.4849 0.8381 0.0576 29 1 -0.0520 -1.3115 1.5493 30 1 -0.2968 -3.0711 1.4392 31 1 1.6864 -3.4373 2.8821 32 1 1.9312 -1.6777 2.9921 33 1 -0.3060 -1.4306 4.0318 34 1 -0.5515 -3.1901 3.9221 35 1 1.8633 -2.7142 5.3066 36 1 -0.6866 -2.6011 9.2108 37 1 3.5060 -3.3877 12.3311 38 1 4.6439 -3.3994 9.9827 39 1 1.6464 -4.5015 0.4648 40 1 3.2386 -2.6945 -1.5439 41 1 3.4061 -4.5221 -1.3621 42 1 0.9562 -4.8067 -1.9568 43 1 0.7874 -2.9794 -2.1391 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752261735.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:00:40 Heat of formation + Delta-G solvation = 72.855908 kcal Electronic energy + Delta-G solvation = -25278.490900 eV Core-core repulsion = 21521.190105 eV Total energy + Delta-G solvation = -3757.300794 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.16092 -40.26602 -38.65357 -37.18033 -35.42361 -33.66202 -32.62914 -31.74753 -30.81867 -29.70384 -28.38957 -25.61472 -24.12901 -22.80282 -21.90144 -21.48862 -21.09096 -20.93034 -20.13978 -19.63528 -18.56547 -17.26324 -16.55627 -16.50553 -16.00451 -15.66251 -15.44826 -15.27167 -14.71559 -14.42947 -14.24840 -13.80626 -13.76859 -13.62511 -13.23091 -13.06763 -12.69661 -12.25713 -11.99703 -11.98471 -11.58238 -11.08434 -10.88666 -10.79723 -10.71922 -10.34022 -10.33343 -10.23565 -9.99418 -9.71143 -9.62331 -9.31418 -9.06275 -8.85938 -8.52416 -8.10806 -6.63601 -5.85259 -3.45795 0.77596 2.01096 2.24345 2.42162 2.64664 3.20213 3.23666 3.29865 3.38537 3.39727 4.30106 4.38653 4.51512 4.74784 4.88024 5.01375 5.09273 5.23436 5.24522 5.27182 5.52293 5.56389 5.67901 5.84815 5.86223 5.92392 6.05833 6.06619 6.21451 6.21869 6.31379 6.33412 6.44784 6.58643 6.60577 6.66759 6.88813 6.98311 7.02350 7.03979 7.18307 7.44169 7.60593 7.73971 8.08055 8.40818 9.08541 9.71706 10.27293 11.10765 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016478 B = 0.002495 C = 0.002415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1698.835603 B =11219.259567 C =11591.126421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.011 3.989 3 Si 0.895 3.105 4 H -0.285 1.285 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.260 4.260 8 H 0.065 0.935 9 N -0.552 5.552 10 C 0.149 3.851 11 C -0.146 4.146 12 C 0.121 3.879 13 N -0.721 5.721 14 C 0.584 3.416 15 O -0.522 6.522 16 C 0.012 3.988 17 C -0.082 4.082 18 C -0.040 4.040 19 O -0.169 6.169 20 C 0.010 3.990 21 C -0.202 4.202 22 C 0.009 3.991 23 N -0.532 5.532 24 H 0.421 0.579 25 C 0.120 3.880 26 C -0.197 4.197 27 C -0.222 4.222 28 H 0.256 0.744 29 H 0.103 0.897 30 H 0.029 0.971 31 H 0.050 0.950 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.394 0.606 36 H 0.161 0.839 37 H 0.212 0.788 38 H 0.154 0.846 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.073 0.927 42 H 0.069 0.931 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.887 -7.795 18.280 21.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.189 4.189 3 Si 0.724 3.276 4 H -0.212 1.212 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.389 4.389 8 H 0.083 0.917 9 N -0.268 5.268 10 C 0.022 3.978 11 C -0.186 4.186 12 C -0.002 4.002 13 N -0.372 5.372 14 C 0.369 3.631 15 O -0.398 6.398 16 C -0.101 4.101 17 C -0.110 4.110 18 C -0.092 4.092 19 O -0.066 6.066 20 C -0.058 4.058 21 C -0.224 4.224 22 C -0.104 4.104 23 N -0.136 5.136 24 H 0.259 0.741 25 C 0.011 3.989 26 C -0.235 4.235 27 C -0.263 4.263 28 H 0.066 0.934 29 H 0.121 0.879 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.227 0.773 36 H 0.179 0.821 37 H 0.228 0.772 38 H 0.171 0.829 39 H 0.104 0.896 40 H 0.115 0.885 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.705 -7.483 18.281 20.561 hybrid contribution 1.619 0.730 -0.499 1.845 sum 7.324 -6.752 17.782 20.383 Atomic orbital electron populations 1.70030 1.05489 1.26160 1.50690 1.25132 0.94979 0.98742 1.00088 0.86442 0.79499 0.83767 0.77919 1.21210 1.21371 1.20378 1.19036 0.94389 0.85467 1.40010 0.91698 1.43404 1.49135 1.01417 1.32838 1.20855 0.90457 1.03445 0.83021 1.22467 0.98861 1.01258 0.96050 1.21555 0.95588 1.02285 0.80762 1.46059 1.11263 1.73229 1.06603 1.16857 0.86727 0.77649 0.81826 1.90888 1.12972 1.49409 1.86532 1.20415 0.81651 1.13050 0.94944 1.19910 0.98187 1.06725 0.86147 1.19288 0.95793 1.12603 0.81486 1.84027 1.25053 1.74095 1.23451 1.24048 0.80154 1.02108 0.99509 1.20570 0.99160 1.12681 0.89956 1.19031 0.96487 1.10294 0.84610 1.41178 1.07362 1.59656 1.05399 0.74083 1.21223 1.00366 0.90208 0.87078 1.23037 0.91952 1.01802 1.06731 1.23366 0.97315 1.00666 1.04950 0.93412 0.87911 0.95242 0.93169 0.91527 0.90909 0.91408 0.77305 0.82121 0.77177 0.82876 0.89647 0.88513 0.90825 0.91234 0.89011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.30 11.33 55.49 0.63 -23.67 16 2 C 0.01 0.29 4.96 -17.43 -0.09 0.21 16 3 Si 0.89 20.74 29.61 -169.99 -5.03 15.71 16 4 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.26 -6.65 8.63 -15.06 -0.13 -6.78 16 8 H 0.07 1.67 6.55 -52.48 -0.34 1.33 16 9 N -0.55 -12.86 2.78 -165.66 -0.46 -13.32 16 10 C 0.15 3.20 5.34 -4.04 -0.02 3.18 16 11 C -0.15 -2.49 5.65 -26.73 -0.15 -2.64 16 12 C 0.12 1.88 5.67 -4.04 -0.02 1.85 16 13 N -0.72 -9.37 5.55 -61.67 -0.34 -9.72 16 14 C 0.58 8.41 7.78 -12.93 -0.10 8.31 16 15 O -0.52 -9.37 16.87 5.17 0.09 -9.28 16 16 C 0.01 0.15 7.03 -81.86 -0.58 -0.43 16 17 C -0.08 -1.04 10.58 -39.12 -0.41 -1.45 16 18 C -0.04 -0.49 8.20 -38.62 -0.32 -0.80 16 19 O -0.17 -1.83 10.68 3.20 0.03 -1.79 16 20 C 0.01 0.07 12.02 29.40 0.35 0.42 16 21 C -0.20 -1.63 10.89 -39.70 -0.43 -2.07 16 22 C 0.01 0.10 8.11 -83.95 -0.68 -0.58 16 23 N -0.53 -5.33 6.08 -7.04 -0.04 -5.38 16 24 H 0.42 3.01 8.16 -40.82 -0.33 2.68 16 25 C 0.12 2.47 6.56 -67.93 -0.45 2.02 16 26 C -0.20 -3.77 9.80 -26.69 -0.26 -4.03 16 27 C -0.22 -4.43 10.36 -26.69 -0.28 -4.71 16 28 H 0.26 6.85 8.32 -40.82 -0.34 6.51 16 29 H 0.10 2.54 5.36 -51.93 -0.28 2.26 16 30 H 0.03 0.61 8.07 -51.93 -0.42 0.19 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.39 4.00 7.56 -40.82 -0.31 3.69 16 36 H 0.16 1.88 8.06 -52.48 -0.42 1.45 16 37 H 0.21 0.52 8.06 -52.48 -0.42 0.10 16 38 H 0.15 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 40 H 0.10 2.02 6.37 -51.93 -0.33 1.69 16 41 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.09 2.11 8.14 -51.93 -0.42 1.68 16 LS Contribution 365.48 15.07 5.51 5.51 Total: -1.00 -31.69 365.48 -8.98 -40.67 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.80 Total: 8.77 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -3.56 Total: -7.50 kcal Atomic # 7 Polarization: -51.87 SS G_CDS: -0.22 Total: -52.08 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.12 Total: -11.07 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.69 -8.98 -40.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752261735.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.526 kcal (2) G-P(sol) polarization free energy of solvation -31.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds