Wall clock time and date at job start Tue Mar 31 2020 11:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38291 * 119.92101 * 2 1 4 4 C 1.38102 * 120.07287 * 179.97438 * 3 2 1 5 5 C 1.38930 * 119.92101 * 359.97438 * 4 3 2 6 6 N 1.39723 * 120.07002 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00571 * 33.13848 * 6 5 4 8 8 O 1.21373 * 119.99746 * 5.13637 * 7 6 5 9 9 C 1.49351 * 120.00611 * 185.13400 * 7 6 5 10 10 O 1.21364 * 119.99808 * 0.02562 * 9 7 6 11 11 N 1.34774 * 120.00611 * 180.02562 * 9 7 6 12 12 C 1.46500 * 120.00595 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47184 * 180.02562 * 12 11 9 14 14 H 1.09000 * 112.96545 * 53.31827 * 13 12 11 15 15 C 1.53944 * 113.76456 * 185.00052 * 13 12 11 16 16 C 1.53947 * 86.28896 * 137.90653 * 15 13 12 17 17 N 1.47582 * 113.76552 * 281.49229 * 13 12 11 18 18 C 1.36929 * 134.49726 * 41.06149 * 17 13 12 19 19 H 1.08006 * 119.99581 * 3.58961 * 18 17 13 20 20 C 1.38809 * 120.00490 * 183.58940 * 18 17 13 21 21 N 1.31620 * 119.99764 * 353.07109 * 20 18 17 22 22 Si 1.86803 * 120.00456 * 173.06541 * 20 18 17 23 23 H 1.48501 * 109.46838 * 94.98368 * 22 20 18 24 24 H 1.48490 * 109.47448 * 214.98598 * 22 20 18 25 25 H 1.48502 * 109.46941 * 334.98621 * 22 20 18 26 26 C 1.38924 * 119.85116 * 0.27837 * 5 4 3 27 27 C 1.38093 * 119.92039 * 359.44288 * 26 5 4 28 28 H 1.09009 * 109.47270 * 89.99838 * 1 2 3 29 29 H 1.09005 * 109.47366 * 209.99804 * 1 2 3 30 30 H 1.08996 * 109.47479 * 330.00071 * 1 2 3 31 31 H 1.07995 * 119.96441 * 359.97438 * 3 2 1 32 32 H 1.08000 * 120.03792 * 179.97438 * 4 3 2 33 33 H 0.97004 * 120.00066 * 212.85972 * 6 5 4 34 34 H 0.97001 * 119.99660 * 0.02562 * 11 9 7 35 35 H 1.09001 * 109.46794 * 300.00282 * 12 11 9 36 36 H 1.09000 * 109.46870 * 59.99550 * 12 11 9 37 37 H 1.09010 * 113.73886 * 252.24802 * 15 13 12 38 38 H 1.08989 * 113.74508 * 23.45142 * 15 13 12 39 39 H 1.08999 * 113.76981 * 90.68924 * 16 15 13 40 40 H 1.09004 * 113.76733 * 222.08677 * 16 15 13 41 41 H 0.97007 * 120.00087 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.03987 * 179.72424 * 26 5 4 43 43 H 1.08008 * 119.96190 * 180.27388 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1986 0.0000 4 6 3.5778 1.2022 0.0005 5 6 4.2740 0.0000 0.0016 6 7 5.6712 0.0000 0.0027 7 6 6.3447 0.9776 0.6408 8 8 5.7410 1.8049 1.2922 9 6 7.8338 1.0431 0.5464 10 8 8.4374 0.2162 -0.1053 11 7 8.5072 2.0204 1.1850 12 6 9.9679 2.0850 1.0919 13 6 10.4783 3.2782 1.9022 14 1 10.1191 3.2784 2.9313 15 6 11.9944 3.5122 1.7740 16 6 11.6538 5.0103 1.6764 17 7 10.3215 4.5747 1.2146 18 6 9.3360 5.1445 0.4538 19 1 8.4019 4.6240 0.3021 20 6 9.5373 6.3912 -0.1225 21 7 10.6162 7.0855 0.1712 22 14 8.2771 7.0835 -1.3151 23 1 7.3353 7.9673 -0.5821 24 1 8.9709 7.8655 -2.3696 25 1 7.5232 5.9678 -1.9414 26 6 3.5778 -1.2022 -0.0037 27 6 2.1969 -1.1985 0.0016 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6550 2.1328 -0.0004 32 1 4.1160 2.1386 0.0001 33 1 6.1566 -0.7058 -0.4524 34 1 8.0248 2.6811 1.7062 35 1 10.3982 1.1657 1.4893 36 1 10.2606 2.2018 0.0485 37 1 12.5566 3.2474 2.6696 38 1 12.4269 3.0985 0.8631 39 1 11.6397 5.5213 2.6391 40 1 12.2289 5.5432 0.9190 41 1 10.7571 7.9565 -0.2318 42 1 4.1159 -2.1386 -0.0074 43 1 1.6550 -2.1328 0.0019 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754502847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:48 Heat of formation + Delta-G solvation = 13.637730 kcal Electronic energy + Delta-G solvation = -25692.536578 eV Core-core repulsion = 21932.667890 eV Total energy + Delta-G solvation = -3759.868687 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.04091 -39.52344 -38.42101 -37.82408 -35.55140 -34.16498 -32.20730 -31.76319 -31.14117 -28.50277 -27.87983 -26.91610 -24.34746 -23.40004 -23.19542 -22.13305 -21.26828 -20.25390 -19.33157 -18.64308 -17.62029 -16.80668 -16.37571 -15.97840 -15.59858 -15.51565 -15.22036 -14.85100 -14.42277 -14.15951 -13.98439 -13.87903 -13.73636 -13.58520 -13.35910 -12.98899 -12.56590 -12.36949 -12.02662 -11.94530 -11.51658 -11.44044 -11.27029 -11.18334 -11.08443 -10.73131 -10.58659 -10.43928 -10.04009 -9.78602 -9.67687 -9.41130 -9.10751 -8.86235 -8.76054 -8.21167 -6.94022 -5.79578 -3.11291 0.89395 1.22203 1.61385 2.33938 3.22381 3.38137 3.44273 3.45545 3.61999 3.66102 4.39808 4.51438 4.62611 4.68876 4.82516 5.04738 5.07287 5.19148 5.31268 5.32817 5.36416 5.52251 5.55154 5.59986 5.66706 5.82079 5.83941 5.93517 6.07680 6.09759 6.20587 6.26857 6.32965 6.42409 6.47839 6.57921 6.68908 6.80564 6.94882 7.20942 7.37273 7.45332 7.56058 7.74547 7.95744 8.10523 9.01795 9.68852 10.55592 11.37339 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.003170 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.702581 B = 8831.943755 C =10296.541482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.104 4.104 3 C -0.099 4.099 4 C -0.116 4.116 5 C 0.141 3.859 6 N -0.649 5.649 7 C 0.508 3.492 8 O -0.494 6.494 9 C 0.505 3.495 10 O -0.530 6.530 11 N -0.675 5.675 12 C 0.120 3.880 13 C 0.124 3.876 14 H 0.052 0.948 15 C -0.154 4.154 16 C 0.158 3.842 17 N -0.602 5.602 18 C -0.222 4.222 19 H 0.078 0.922 20 C -0.004 4.004 21 N -0.918 5.918 22 Si 0.906 3.094 23 H -0.289 1.289 24 H -0.289 1.289 25 H -0.281 1.281 26 C -0.139 4.139 27 C -0.102 4.102 28 H 0.069 0.931 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.137 0.863 33 H 0.422 0.578 34 H 0.416 0.584 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.028 0.972 40 H 0.074 0.926 41 H 0.253 0.747 42 H 0.127 0.873 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.766 -16.746 1.294 21.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.105 4.105 3 C -0.118 4.118 4 C -0.136 4.136 5 C 0.047 3.953 6 N -0.296 5.296 7 C 0.290 3.710 8 O -0.367 6.367 9 C 0.284 3.716 10 O -0.408 6.408 11 N -0.326 5.326 12 C -0.004 4.004 13 C 0.016 3.984 14 H 0.070 0.930 15 C -0.193 4.193 16 C 0.033 3.967 17 N -0.329 5.329 18 C -0.350 4.350 19 H 0.096 0.904 20 C -0.201 4.201 21 N -0.565 5.565 22 Si 0.736 3.264 23 H -0.216 1.216 24 H -0.215 1.215 25 H -0.206 1.206 26 C -0.160 4.160 27 C -0.121 4.121 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.144 0.856 32 H 0.155 0.845 33 H 0.260 0.740 34 H 0.252 0.748 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.096 0.904 39 H 0.045 0.955 40 H 0.092 0.908 41 H 0.063 0.937 42 H 0.145 0.855 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.803 -16.413 1.100 20.844 hybrid contribution -0.693 0.540 -0.541 1.031 sum -13.495 -15.873 0.559 20.842 Atomic orbital electron populations 1.20763 0.91133 1.02727 1.02226 1.19937 0.96200 0.93125 1.01217 1.20950 0.93434 0.97807 0.99600 1.21240 0.94377 0.97734 1.00212 1.17741 0.81891 0.94419 1.01236 1.43164 1.04829 1.28530 1.53071 1.20533 0.89244 0.81715 0.79492 1.90800 1.69780 1.38167 1.37962 1.19713 0.87222 0.83161 0.81473 1.90745 1.69407 1.39976 1.40709 1.45827 1.09069 1.28669 1.49039 1.22012 0.77048 0.98808 1.02538 1.22533 0.94331 0.86935 0.94568 0.93044 1.23759 0.94391 1.00530 1.00595 1.22228 0.86165 0.91038 0.97299 1.46160 1.17791 1.12530 1.56384 1.18946 0.94441 1.00262 1.21321 0.90406 1.24750 0.97926 0.96871 1.00549 1.69832 1.27530 1.13051 1.46083 0.86193 0.80368 0.78870 0.80923 1.21605 1.21547 1.20635 1.20879 0.94554 0.96327 1.04195 1.20794 0.93169 0.97672 1.00452 0.91271 0.91655 0.91545 0.85562 0.84484 0.74000 0.74771 0.91363 0.90156 0.92637 0.90394 0.95467 0.90806 0.93653 0.85478 0.85649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.10 -0.99 5.88 -104.58 -0.62 -1.61 16 3 C -0.10 -1.10 9.69 -39.61 -0.38 -1.48 16 4 C -0.12 -1.53 8.65 -39.38 -0.34 -1.87 16 5 C 0.14 1.75 6.28 -83.75 -0.53 1.22 16 6 N -0.65 -8.18 5.32 -10.30 -0.05 -8.24 16 7 C 0.51 7.79 7.63 -11.63 -0.09 7.71 16 8 O -0.49 -8.57 14.14 5.48 0.08 -8.49 16 9 C 0.51 8.34 7.89 -11.63 -0.09 8.24 16 10 O -0.53 -9.35 16.48 5.48 0.09 -9.26 16 11 N -0.68 -11.53 5.55 -60.76 -0.34 -11.86 16 12 C 0.12 2.07 5.54 -4.04 -0.02 2.04 16 13 C 0.12 2.33 4.33 -66.86 -0.29 2.04 16 14 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 15 C -0.15 -2.71 7.86 -25.80 -0.20 -2.91 16 16 C 0.16 3.57 7.53 -2.97 -0.02 3.54 16 17 N -0.60 -14.58 3.57 -170.74 -0.61 -15.19 16 18 C -0.22 -6.01 10.50 -15.06 -0.16 -6.17 16 19 H 0.08 2.05 7.84 -52.48 -0.41 1.64 16 20 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 21 N -0.92 -26.94 11.41 55.49 0.63 -26.30 16 22 Si 0.91 22.33 29.56 -169.99 -5.02 17.30 16 23 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 26 C -0.14 -1.38 9.96 -39.38 -0.39 -1.77 16 27 C -0.10 -0.92 9.69 -39.62 -0.38 -1.31 16 28 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 30 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.13 1.19 8.06 -52.49 -0.42 0.77 16 32 H 0.14 2.05 6.40 -52.49 -0.34 1.71 16 33 H 0.42 4.47 8.29 -40.82 -0.34 4.13 16 34 H 0.42 7.27 7.94 -40.82 -0.32 6.94 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.08 1.34 8.10 -51.94 -0.42 0.92 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.07 1.85 7.16 -51.93 -0.37 1.48 16 41 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 42 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 43 H 0.13 0.82 8.06 -52.48 -0.42 0.39 16 LS Contribution 367.54 15.07 5.54 5.54 Total: -1.00 -32.19 367.54 -8.92 -41.11 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -5.98 Total: 8.34 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -3.25 Total: 7.06 kcal Atomic # 7 Polarization: -61.23 SS G_CDS: -0.37 Total: -61.60 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: 0.17 Total: -17.75 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.19 -8.92 -41.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754502847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.751 kcal (2) G-P(sol) polarization free energy of solvation -32.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds