Wall clock time and date at job start Tue Mar 31 2020 11:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38291 * 119.92101 * 2 1 4 4 C 1.38102 * 120.07287 * 179.97438 * 3 2 1 5 5 C 1.38930 * 119.92101 * 359.97438 * 4 3 2 6 6 N 1.39723 * 120.07002 * 180.02562 * 5 4 3 7 7 C 1.34774 * 120.00571 * 33.13848 * 6 5 4 8 8 O 1.21373 * 119.99746 * 5.13637 * 7 6 5 9 9 C 1.49351 * 120.00611 * 185.13400 * 7 6 5 10 10 O 1.21364 * 119.99808 * 0.02562 * 9 7 6 11 11 N 1.34774 * 120.00611 * 180.02562 * 9 7 6 12 12 C 1.46500 * 120.00595 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47184 * 180.02562 * 12 11 9 14 14 H 1.09000 * 112.96545 * 53.31827 * 13 12 11 15 15 C 1.53944 * 113.76456 * 185.00052 * 13 12 11 16 16 C 1.53947 * 86.28896 * 137.90653 * 15 13 12 17 17 N 1.47582 * 113.76552 * 281.49229 * 13 12 11 18 18 C 1.36929 * 134.49726 * 41.06149 * 17 13 12 19 19 H 1.08006 * 119.99581 * 3.58961 * 18 17 13 20 20 C 1.38809 * 120.00490 * 183.58940 * 18 17 13 21 21 N 1.31620 * 119.99764 * 353.07109 * 20 18 17 22 22 Si 1.86803 * 120.00456 * 173.06541 * 20 18 17 23 23 H 1.48501 * 109.46838 * 94.98368 * 22 20 18 24 24 H 1.48490 * 109.47448 * 214.98598 * 22 20 18 25 25 H 1.48502 * 109.46941 * 334.98621 * 22 20 18 26 26 C 1.38924 * 119.85116 * 0.27837 * 5 4 3 27 27 C 1.38093 * 119.92039 * 359.44288 * 26 5 4 28 28 H 1.09009 * 109.47270 * 89.99838 * 1 2 3 29 29 H 1.09005 * 109.47366 * 209.99804 * 1 2 3 30 30 H 1.08996 * 109.47479 * 330.00071 * 1 2 3 31 31 H 1.07995 * 119.96441 * 359.97438 * 3 2 1 32 32 H 1.08000 * 120.03792 * 179.97438 * 4 3 2 33 33 H 0.97004 * 120.00066 * 212.85972 * 6 5 4 34 34 H 0.97001 * 119.99660 * 0.02562 * 11 9 7 35 35 H 1.09001 * 109.46794 * 300.00282 * 12 11 9 36 36 H 1.09000 * 109.46870 * 59.99550 * 12 11 9 37 37 H 1.09010 * 113.73886 * 252.24802 * 15 13 12 38 38 H 1.08989 * 113.74508 * 23.45142 * 15 13 12 39 39 H 1.08999 * 113.76981 * 90.68924 * 16 15 13 40 40 H 1.09004 * 113.76733 * 222.08677 * 16 15 13 41 41 H 0.97007 * 120.00087 * 179.97438 * 21 20 18 42 42 H 1.08000 * 120.03987 * 179.72424 * 26 5 4 43 43 H 1.08008 * 119.96190 * 180.27388 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1986 0.0000 4 6 3.5778 1.2022 0.0005 5 6 4.2740 0.0000 0.0016 6 7 5.6712 0.0000 0.0027 7 6 6.3447 0.9776 0.6408 8 8 5.7410 1.8049 1.2922 9 6 7.8338 1.0431 0.5464 10 8 8.4374 0.2162 -0.1053 11 7 8.5072 2.0204 1.1850 12 6 9.9679 2.0850 1.0919 13 6 10.4783 3.2782 1.9022 14 1 10.1191 3.2784 2.9313 15 6 11.9944 3.5122 1.7740 16 6 11.6538 5.0103 1.6764 17 7 10.3215 4.5747 1.2146 18 6 9.3360 5.1445 0.4538 19 1 8.4019 4.6240 0.3021 20 6 9.5373 6.3912 -0.1225 21 7 10.6162 7.0855 0.1712 22 14 8.2771 7.0835 -1.3151 23 1 7.3353 7.9673 -0.5821 24 1 8.9709 7.8655 -2.3696 25 1 7.5232 5.9678 -1.9414 26 6 3.5778 -1.2022 -0.0037 27 6 2.1969 -1.1985 0.0016 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8899 0.5138 31 1 1.6550 2.1328 -0.0004 32 1 4.1160 2.1386 0.0001 33 1 6.1566 -0.7058 -0.4524 34 1 8.0248 2.6811 1.7062 35 1 10.3982 1.1657 1.4893 36 1 10.2606 2.2018 0.0485 37 1 12.5566 3.2474 2.6696 38 1 12.4269 3.0985 0.8631 39 1 11.6397 5.5213 2.6391 40 1 12.2289 5.5432 0.9190 41 1 10.7571 7.9565 -0.2318 42 1 4.1159 -2.1386 -0.0074 43 1 1.6550 -2.1328 0.0019 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754502847.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:48 Heat of formation + Delta-G solvation = -8.133653 kcal Electronic energy + Delta-G solvation = -25693.480656 eV Core-core repulsion = 21932.667890 eV Total energy + Delta-G solvation = -3760.812765 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.18907 -40.65157 -39.75380 -39.21310 -36.63518 -35.51107 -34.23139 -32.57376 -31.95022 -30.07358 -29.65612 -27.81618 -25.52511 -25.31027 -24.09523 -23.48422 -22.25253 -21.47490 -20.89382 -19.98090 -18.69958 -18.50945 -17.64278 -17.31455 -16.96316 -16.76985 -16.39215 -16.16050 -15.73676 -15.64461 -15.31292 -14.94022 -14.75334 -14.63254 -14.57753 -14.35939 -13.63898 -13.33755 -13.28395 -13.07017 -13.01545 -12.97854 -12.72977 -12.58746 -12.42969 -12.35918 -12.06557 -11.87091 -11.52855 -11.43125 -11.33160 -10.83070 -10.73105 -10.26723 -9.93648 -9.08719 -8.91377 -7.90980 -5.20812 -0.13037 0.40551 0.54018 1.17068 1.40370 1.40947 1.49149 1.99092 2.41544 2.50946 2.77659 3.21639 3.31788 3.40075 3.88067 3.96728 3.98061 4.03839 4.07071 4.33411 4.36106 4.43918 4.45977 4.57439 4.69926 4.81410 4.84556 4.88402 5.03197 5.05436 5.07462 5.09123 5.15008 5.24350 5.32070 5.32754 5.40092 5.60148 5.65860 5.74555 5.82389 5.96801 6.01860 6.22119 6.58415 6.78854 6.94018 7.62795 8.57316 9.26131 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014845 B = 0.003170 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.702581 B = 8831.943755 C =10296.541482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.113 4.113 4 C -0.140 4.140 5 C 0.114 3.886 6 N -0.633 5.633 7 C 0.509 3.491 8 O -0.521 6.521 9 C 0.508 3.492 10 O -0.541 6.541 11 N -0.680 5.680 12 C 0.128 3.872 13 C 0.128 3.872 14 H 0.070 0.930 15 C -0.124 4.124 16 C 0.147 3.853 17 N -0.631 5.631 18 C -0.214 4.214 19 H 0.078 0.922 20 C -0.066 4.066 21 N -0.951 5.951 22 Si 0.961 3.039 23 H -0.289 1.289 24 H -0.293 1.293 25 H -0.277 1.277 26 C -0.132 4.132 27 C -0.101 4.101 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.134 0.866 32 H 0.109 0.891 33 H 0.431 0.569 34 H 0.413 0.587 35 H 0.099 0.901 36 H 0.057 0.943 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.021 0.979 40 H 0.040 0.960 41 H 0.246 0.754 42 H 0.154 0.846 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.324 -19.817 1.620 24.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.131 4.131 4 C -0.161 4.161 5 C 0.021 3.979 6 N -0.280 5.280 7 C 0.291 3.709 8 O -0.396 6.396 9 C 0.288 3.712 10 O -0.420 6.420 11 N -0.330 5.330 12 C 0.004 3.996 13 C 0.022 3.978 14 H 0.087 0.913 15 C -0.163 4.163 16 C 0.022 3.978 17 N -0.358 5.358 18 C -0.343 4.343 19 H 0.096 0.904 20 C -0.259 4.259 21 N -0.600 5.600 22 Si 0.791 3.209 23 H -0.216 1.216 24 H -0.219 1.219 25 H -0.202 1.202 26 C -0.152 4.152 27 C -0.119 4.119 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.152 0.848 32 H 0.127 0.873 33 H 0.271 0.729 34 H 0.249 0.751 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.039 0.961 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.171 0.829 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -14.375 -19.551 1.423 24.309 hybrid contribution -0.299 1.383 -0.611 1.541 sum -14.674 -18.168 0.812 23.368 Atomic orbital electron populations 1.20831 0.88935 1.03768 1.03229 1.20328 0.97841 0.92641 0.99393 1.21132 0.92736 0.99229 1.00051 1.21181 0.95454 0.97169 1.02252 1.17955 0.81485 0.95217 1.03252 1.43041 1.05239 1.27729 1.51974 1.20313 0.88652 0.82170 0.79782 1.90793 1.69950 1.39390 1.39516 1.19865 0.87749 0.82683 0.80885 1.90733 1.69813 1.40339 1.41082 1.45846 1.09093 1.28826 1.49230 1.21866 0.77327 0.99360 1.01010 1.22735 0.95287 0.84985 0.94821 0.91283 1.23531 0.94049 0.95900 1.02817 1.22224 0.85633 0.94177 0.95778 1.46532 1.17656 1.14796 1.56804 1.19227 0.94835 0.99816 1.20433 0.90414 1.25438 0.99809 0.97844 1.02772 1.69991 1.29261 1.13142 1.47619 0.85313 0.78423 0.78107 0.79061 1.21615 1.21918 1.20193 1.21203 0.95167 0.96235 1.02597 1.21239 0.92933 0.98834 0.98883 0.90150 0.89926 0.91276 0.84795 0.87297 0.72896 0.75088 0.88286 0.92437 0.88472 0.89771 0.96115 0.94178 0.94442 0.82881 0.82321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.17 10.01 71.24 0.71 -0.45 16 2 C -0.10 -1.70 5.88 -19.84 -0.12 -1.82 16 3 C -0.11 -2.45 9.69 22.25 0.22 -2.24 16 4 C -0.14 -3.80 8.65 22.40 0.19 -3.60 16 5 C 0.11 2.75 6.28 38.21 0.24 2.99 16 6 N -0.63 -15.64 5.32 -304.85 -1.62 -17.26 16 7 C 0.51 15.68 7.63 87.24 0.67 16.35 16 8 O -0.52 -18.58 14.14 -3.32 -0.05 -18.63 16 9 C 0.51 16.52 7.89 87.24 0.69 17.21 16 10 O -0.54 -18.50 16.48 -3.29 -0.05 -18.56 16 11 N -0.68 -22.77 5.55 -464.51 -2.58 -25.35 16 12 C 0.13 4.21 5.54 86.38 0.48 4.69 16 13 C 0.13 4.58 4.33 45.09 0.20 4.77 16 14 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 15 C -0.12 -4.09 7.86 31.25 0.25 -3.85 16 16 C 0.15 6.68 7.53 86.48 0.65 7.33 16 17 N -0.63 -30.65 3.57 -694.10 -2.48 -33.13 16 18 C -0.21 -11.77 10.50 84.03 0.88 -10.88 16 19 H 0.08 4.16 7.84 -2.91 -0.02 4.14 16 20 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 21 N -0.95 -57.62 11.41 21.65 0.25 -57.37 16 22 Si 0.96 47.17 29.56 68.60 2.03 49.20 16 23 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 24 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 25 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 26 C -0.13 -2.29 9.96 22.40 0.22 -2.07 16 27 C -0.10 -1.49 9.69 22.25 0.22 -1.27 16 28 H 0.08 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.08 0.61 8.08 -2.38 -0.02 0.59 16 30 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 31 H 0.13 2.53 8.06 -2.91 -0.02 2.51 16 32 H 0.11 3.50 6.40 -2.91 -0.02 3.48 16 33 H 0.43 8.66 8.29 -92.71 -0.77 7.90 16 34 H 0.41 14.41 7.94 -92.71 -0.74 13.67 16 35 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 36 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.10 2.46 8.14 -2.38 -0.02 2.44 16 38 H 0.08 2.69 8.10 -2.39 -0.02 2.67 16 39 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.04 2.08 7.16 -2.39 -0.02 2.06 16 41 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 42 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 43 H 0.16 1.30 8.06 -2.91 -0.02 1.27 16 Total: -1.00 -71.89 367.54 0.99 -70.90 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: -0.46 Total: 26.34 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 5.96 Total: 23.85 kcal Atomic # 7 Polarization: -126.67 SS G_CDS: -6.43 Total: -133.10 kcal Atomic # 8 Polarization: -37.08 SS G_CDS: -0.10 Total: -37.19 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -71.89 0.99 -70.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754502847.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.766 kcal (2) G-P(sol) polarization free energy of solvation -71.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds