Wall clock time and date at job start Tue Mar 31 2020 11:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38291 * 119.92753 * 2 1 4 4 C 1.38096 * 120.07811 * 179.97438 * 3 2 1 5 5 C 1.38924 * 119.92391 * 0.02562 * 4 3 2 6 6 N 1.39731 * 120.07591 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99740 * 35.09902 * 6 5 4 8 8 O 1.21378 * 120.00234 * 355.39253 * 7 6 5 9 9 C 1.49360 * 119.99821 * 175.39208 * 7 6 5 10 10 O 1.21358 * 119.99913 * 0.02562 * 9 7 6 11 11 N 1.34775 * 119.99928 * 180.27997 * 9 7 6 12 12 C 1.46502 * 119.99841 * 179.72403 * 11 9 7 13 13 C 1.52997 * 109.46999 * 179.97438 * 12 11 9 14 14 H 1.09001 * 112.96939 * 306.67675 * 13 12 11 15 15 C 1.53949 * 113.77119 * 174.99862 * 13 12 11 16 16 C 1.53941 * 86.29306 * 222.09388 * 15 13 12 17 17 N 1.47584 * 86.11724 * 23.60809 * 16 15 13 18 18 C 1.36938 * 134.49671 * 155.36447 * 17 16 15 19 19 H 1.07992 * 120.00384 * 185.06133 * 18 17 16 20 20 C 1.38813 * 119.99672 * 5.05507 * 18 17 16 21 21 N 1.31624 * 120.00043 * 355.00074 * 20 18 17 22 22 Si 1.86802 * 119.99913 * 175.00135 * 20 18 17 23 23 H 1.48497 * 109.47272 * 95.00245 * 22 20 18 24 24 H 1.48505 * 109.46885 * 215.00181 * 22 20 18 25 25 H 1.48503 * 109.46838 * 334.99843 * 22 20 18 26 26 C 1.38926 * 119.84755 * 0.25532 * 5 4 3 27 27 C 1.38092 * 119.92648 * 359.46576 * 26 5 4 28 28 H 1.09002 * 109.46670 * 89.99643 * 1 2 3 29 29 H 1.08998 * 109.47025 * 209.99705 * 1 2 3 30 30 H 1.08998 * 109.46774 * 330.00080 * 1 2 3 31 31 H 1.08004 * 119.96308 * 0.02562 * 3 2 1 32 32 H 1.08006 * 120.03555 * 180.02562 * 4 3 2 33 33 H 0.96995 * 120.00212 * 215.10452 * 6 5 4 34 34 H 0.96994 * 119.99807 * 359.72001 * 11 9 7 35 35 H 1.08997 * 109.46958 * 299.99609 * 12 11 9 36 36 H 1.08998 * 109.47001 * 59.99582 * 12 11 9 37 37 H 1.09001 * 113.73573 * 336.44413 * 15 13 12 38 38 H 1.08998 * 113.74096 * 107.63628 * 15 13 12 39 39 H 1.09002 * 113.76797 * 137.90016 * 16 15 13 40 40 H 1.08992 * 113.76816 * 269.19607 * 16 15 13 41 41 H 0.97003 * 119.99932 * 179.97438 * 21 20 18 42 42 H 1.08008 * 120.03503 * 179.72476 * 26 5 4 43 43 H 1.07994 * 119.96892 * 180.29729 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.2741 -0.0001 0.0005 6 7 5.6714 -0.0001 0.0005 7 6 6.3452 0.9548 0.6717 8 8 5.7413 1.8620 1.2060 9 6 7.8352 0.8968 0.7579 10 8 8.4391 -0.0100 0.2232 11 7 8.5087 1.8486 1.4338 12 6 9.9697 1.7883 1.5235 13 6 10.4801 2.9783 2.3385 14 1 10.1180 3.9362 1.9652 15 6 11.9972 2.9472 2.5987 16 6 11.6599 3.4009 4.0306 17 7 10.3281 2.8095 3.7968 18 6 9.3457 2.3064 4.6073 19 1 8.4705 1.8460 4.1732 20 6 9.4748 2.3880 5.9870 21 7 10.5835 2.8589 6.5175 22 14 8.0750 1.8295 7.0907 23 1 8.3045 0.4229 7.5078 24 1 8.0157 2.6990 8.2931 25 1 6.7921 1.9228 6.3486 26 6 3.5778 -1.2023 -0.0054 27 6 2.1969 -1.1987 -0.0001 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6551 2.1328 0.0004 32 1 4.1161 2.1386 0.0010 33 1 6.1564 -0.6873 -0.4825 34 1 8.0260 2.5735 1.8608 35 1 10.2657 0.8596 2.0113 36 1 10.3970 1.8246 0.5214 37 1 12.4311 1.9487 2.5455 38 1 12.5564 3.6847 2.0230 39 1 12.2380 2.8905 4.8008 40 1 11.6458 4.4835 4.1565 41 1 10.6736 2.9163 7.4816 42 1 4.1160 -2.1387 -0.0099 43 1 1.6550 -2.1328 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754502848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:51 Heat of formation + Delta-G solvation = 13.992012 kcal Electronic energy + Delta-G solvation = -25674.689176 eV Core-core repulsion = 21914.835851 eV Total energy + Delta-G solvation = -3759.853324 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.03895 -39.52330 -38.41781 -37.82245 -35.54594 -34.16435 -32.20607 -31.76672 -31.13675 -28.50344 -27.87237 -26.91674 -24.33461 -23.39220 -23.18305 -22.13219 -21.27754 -20.26621 -19.33903 -18.64701 -17.59943 -16.79063 -16.28643 -16.09363 -15.57538 -15.55074 -15.20563 -14.85574 -14.46766 -14.12052 -13.98697 -13.85252 -13.74914 -13.59047 -13.34741 -12.99791 -12.55698 -12.34571 -12.02882 -11.97043 -11.50747 -11.47914 -11.26578 -11.15115 -11.01611 -10.77544 -10.54386 -10.39551 -10.03763 -9.79258 -9.65881 -9.38271 -9.09920 -8.89135 -8.78579 -8.23574 -6.91686 -5.79494 -3.11593 0.90797 1.22739 1.59676 2.33990 3.22859 3.38873 3.45443 3.47403 3.60087 3.67452 4.40791 4.51899 4.63750 4.68763 4.83585 5.05358 5.07180 5.19716 5.31195 5.33109 5.36397 5.52771 5.55219 5.60495 5.66645 5.82685 5.84212 5.93318 6.08446 6.10629 6.20223 6.26493 6.33052 6.42068 6.47612 6.58170 6.69565 6.81260 6.95025 7.22638 7.35204 7.45472 7.57567 7.75021 7.96092 8.10487 9.02401 9.69136 10.56092 11.37376 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.003156 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.307401 B = 8871.122267 C =10204.939749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.103 4.103 3 C -0.102 4.102 4 C -0.115 4.115 5 C 0.138 3.862 6 N -0.649 5.649 7 C 0.508 3.492 8 O -0.495 6.495 9 C 0.505 3.495 10 O -0.531 6.531 11 N -0.675 5.675 12 C 0.120 3.880 13 C 0.123 3.877 14 H 0.053 0.947 15 C -0.155 4.155 16 C 0.160 3.840 17 N -0.602 5.602 18 C -0.223 4.223 19 H 0.079 0.921 20 C -0.004 4.004 21 N -0.917 5.917 22 Si 0.904 3.096 23 H -0.289 1.289 24 H -0.289 1.289 25 H -0.280 1.280 26 C -0.137 4.137 27 C -0.103 4.103 28 H 0.068 0.932 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.126 0.874 32 H 0.141 0.859 33 H 0.422 0.578 34 H 0.416 0.584 35 H 0.079 0.921 36 H 0.068 0.932 37 H 0.077 0.923 38 H 0.055 0.945 39 H 0.072 0.928 40 H 0.029 0.971 41 H 0.254 0.746 42 H 0.128 0.872 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.735 -4.883 -16.296 21.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.103 4.103 3 C -0.121 4.121 4 C -0.135 4.135 5 C 0.044 3.956 6 N -0.296 5.296 7 C 0.290 3.710 8 O -0.368 6.368 9 C 0.285 3.715 10 O -0.409 6.409 11 N -0.326 5.326 12 C -0.004 4.004 13 C 0.016 3.984 14 H 0.070 0.930 15 C -0.194 4.194 16 C 0.035 3.965 17 N -0.329 5.329 18 C -0.350 4.350 19 H 0.097 0.903 20 C -0.201 4.201 21 N -0.564 5.564 22 Si 0.734 3.266 23 H -0.216 1.216 24 H -0.215 1.215 25 H -0.205 1.205 26 C -0.157 4.157 27 C -0.122 4.122 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.144 0.856 32 H 0.158 0.842 33 H 0.260 0.740 34 H 0.253 0.747 35 H 0.098 0.902 36 H 0.087 0.913 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.046 0.954 41 H 0.064 0.936 42 H 0.146 0.854 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.785 -4.913 -15.915 20.998 hybrid contribution -0.769 -0.229 0.794 1.129 sum -13.555 -5.142 -15.121 20.948 Atomic orbital electron populations 1.20765 0.91143 1.02796 1.02168 1.19951 0.96202 0.93159 1.01037 1.20956 0.93516 0.97735 0.99884 1.21324 0.94273 0.97857 1.00071 1.17758 0.81867 0.94404 1.01591 1.43127 1.04838 1.30953 1.50653 1.20535 0.89240 0.82418 0.78776 1.90786 1.69593 1.32853 1.43546 1.19714 0.87223 0.83587 0.81025 1.90743 1.69442 1.34050 1.46635 1.45834 1.09031 1.26888 1.50881 1.22012 0.77065 1.01495 0.99871 1.22534 0.94315 0.94378 0.87203 0.93019 1.23791 0.94407 1.01175 0.99988 1.22160 0.86010 0.95723 0.92575 1.46096 1.17742 1.69926 0.99103 1.18947 0.98234 1.30724 0.87124 0.90328 1.24774 0.97586 1.01263 0.96470 1.69835 1.25003 1.51077 1.10486 0.86223 0.81863 0.77929 0.80578 1.21609 1.21538 1.20499 1.20932 0.94572 0.96484 1.03702 1.20808 0.93185 0.97714 1.00452 0.91292 0.91614 0.91545 0.85631 0.84179 0.74006 0.74696 0.90233 0.91338 0.90431 0.92641 0.90993 0.95355 0.93646 0.85418 0.85625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 10.01 36.01 0.36 -0.40 16 2 C -0.10 -0.98 5.88 -104.58 -0.62 -1.60 16 3 C -0.10 -1.10 9.69 -39.61 -0.38 -1.48 16 4 C -0.12 -1.46 8.70 -39.38 -0.34 -1.80 16 5 C 0.14 1.70 6.30 -83.75 -0.53 1.17 16 6 N -0.65 -8.16 5.32 -10.29 -0.05 -8.21 16 7 C 0.51 7.79 7.73 -11.63 -0.09 7.70 16 8 O -0.50 -8.58 13.91 5.47 0.08 -8.51 16 9 C 0.51 8.32 7.89 -11.63 -0.09 8.23 16 10 O -0.53 -9.31 16.48 5.49 0.09 -9.22 16 11 N -0.68 -11.53 5.50 -60.76 -0.33 -11.86 16 12 C 0.12 2.06 5.54 -4.04 -0.02 2.03 16 13 C 0.12 2.32 4.33 -66.86 -0.29 2.03 16 14 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 15 C -0.15 -2.72 7.86 -25.81 -0.20 -2.92 16 16 C 0.16 3.63 7.46 -2.97 -0.02 3.61 16 17 N -0.60 -14.63 3.57 -170.75 -0.61 -15.24 16 18 C -0.22 -6.06 10.50 -15.06 -0.16 -6.22 16 19 H 0.08 2.10 7.79 -52.49 -0.41 1.69 16 20 C 0.00 -0.11 5.50 -17.43 -0.10 -0.21 16 21 N -0.92 -27.00 11.47 55.49 0.64 -26.37 16 22 Si 0.90 22.48 29.56 -169.99 -5.02 17.45 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 C -0.14 -1.41 9.97 -39.38 -0.39 -1.80 16 27 C -0.10 -0.96 9.69 -39.61 -0.38 -1.35 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 30 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 31 H 0.13 1.11 8.06 -52.48 -0.42 0.68 16 32 H 0.14 1.92 6.22 -52.48 -0.33 1.59 16 33 H 0.42 4.45 8.30 -40.82 -0.34 4.12 16 34 H 0.42 7.32 7.94 -40.82 -0.32 6.99 16 35 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 1.81 7.29 -51.93 -0.38 1.43 16 40 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 367.31 15.07 5.54 5.54 Total: -1.00 -32.36 367.31 -8.92 -41.28 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.98 Total: 8.16 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -3.26 Total: 6.98 kcal Atomic # 7 Polarization: -61.31 SS G_CDS: -0.36 Total: -61.68 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.17 Total: -17.73 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.36 -8.92 -41.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754502848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.274 kcal (2) G-P(sol) polarization free energy of solvation -32.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds