Wall clock time and date at job start Tue Mar 31 2020 11:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38291 * 119.92753 * 2 1 4 4 C 1.38096 * 120.07811 * 179.97438 * 3 2 1 5 5 C 1.38924 * 119.92391 * 0.02562 * 4 3 2 6 6 N 1.39731 * 120.07591 * 179.97438 * 5 4 3 7 7 C 1.34773 * 119.99740 * 35.09902 * 6 5 4 8 8 O 1.21378 * 120.00234 * 355.39253 * 7 6 5 9 9 C 1.49360 * 119.99821 * 175.39208 * 7 6 5 10 10 O 1.21358 * 119.99913 * 0.02562 * 9 7 6 11 11 N 1.34775 * 119.99928 * 180.27997 * 9 7 6 12 12 C 1.46502 * 119.99841 * 179.72403 * 11 9 7 13 13 C 1.52997 * 109.46999 * 179.97438 * 12 11 9 14 14 H 1.09001 * 112.96939 * 306.67675 * 13 12 11 15 15 C 1.53949 * 113.77119 * 174.99862 * 13 12 11 16 16 C 1.53941 * 86.29306 * 222.09388 * 15 13 12 17 17 N 1.47584 * 86.11724 * 23.60809 * 16 15 13 18 18 C 1.36938 * 134.49671 * 155.36447 * 17 16 15 19 19 H 1.07992 * 120.00384 * 185.06133 * 18 17 16 20 20 C 1.38813 * 119.99672 * 5.05507 * 18 17 16 21 21 N 1.31624 * 120.00043 * 355.00074 * 20 18 17 22 22 Si 1.86802 * 119.99913 * 175.00135 * 20 18 17 23 23 H 1.48497 * 109.47272 * 95.00245 * 22 20 18 24 24 H 1.48505 * 109.46885 * 215.00181 * 22 20 18 25 25 H 1.48503 * 109.46838 * 334.99843 * 22 20 18 26 26 C 1.38926 * 119.84755 * 0.25532 * 5 4 3 27 27 C 1.38092 * 119.92648 * 359.46576 * 26 5 4 28 28 H 1.09002 * 109.46670 * 89.99643 * 1 2 3 29 29 H 1.08998 * 109.47025 * 209.99705 * 1 2 3 30 30 H 1.08998 * 109.46774 * 330.00080 * 1 2 3 31 31 H 1.08004 * 119.96308 * 0.02562 * 3 2 1 32 32 H 1.08006 * 120.03555 * 180.02562 * 4 3 2 33 33 H 0.96995 * 120.00212 * 215.10452 * 6 5 4 34 34 H 0.96994 * 119.99807 * 359.72001 * 11 9 7 35 35 H 1.08997 * 109.46958 * 299.99609 * 12 11 9 36 36 H 1.08998 * 109.47001 * 59.99582 * 12 11 9 37 37 H 1.09001 * 113.73573 * 336.44413 * 15 13 12 38 38 H 1.08998 * 113.74096 * 107.63628 * 15 13 12 39 39 H 1.09002 * 113.76797 * 137.90016 * 16 15 13 40 40 H 1.08992 * 113.76816 * 269.19607 * 16 15 13 41 41 H 0.97003 * 119.99932 * 179.97438 * 21 20 18 42 42 H 1.08008 * 120.03503 * 179.72476 * 26 5 4 43 43 H 1.07994 * 119.96892 * 180.29729 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1985 0.0000 4 6 3.5779 1.2021 0.0005 5 6 4.2741 -0.0001 0.0005 6 7 5.6714 -0.0001 0.0005 7 6 6.3452 0.9548 0.6717 8 8 5.7413 1.8620 1.2060 9 6 7.8352 0.8968 0.7579 10 8 8.4391 -0.0100 0.2232 11 7 8.5087 1.8486 1.4338 12 6 9.9697 1.7883 1.5235 13 6 10.4801 2.9783 2.3385 14 1 10.1180 3.9362 1.9652 15 6 11.9972 2.9472 2.5987 16 6 11.6599 3.4009 4.0306 17 7 10.3281 2.8095 3.7968 18 6 9.3457 2.3064 4.6073 19 1 8.4705 1.8460 4.1732 20 6 9.4748 2.3880 5.9870 21 7 10.5835 2.8589 6.5175 22 14 8.0750 1.8295 7.0907 23 1 8.3045 0.4229 7.5078 24 1 8.0157 2.6990 8.2931 25 1 6.7921 1.9228 6.3486 26 6 3.5778 -1.2023 -0.0054 27 6 2.1969 -1.1987 -0.0001 28 1 -0.3633 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6551 2.1328 0.0004 32 1 4.1161 2.1386 0.0010 33 1 6.1564 -0.6873 -0.4825 34 1 8.0260 2.5735 1.8608 35 1 10.2657 0.8596 2.0113 36 1 10.3970 1.8246 0.5214 37 1 12.4311 1.9487 2.5455 38 1 12.5564 3.6847 2.0230 39 1 12.2380 2.8905 4.8008 40 1 11.6458 4.4835 4.1565 41 1 10.6736 2.9163 7.4816 42 1 4.1160 -2.1387 -0.0099 43 1 1.6550 -2.1328 0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754502848.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:50 Heat of formation + Delta-G solvation = -7.774608 kcal Electronic energy + Delta-G solvation = -25675.633047 eV Core-core repulsion = 21914.835851 eV Total energy + Delta-G solvation = -3760.797196 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.18346 -40.64855 -39.74805 -39.20816 -36.62721 -35.50621 -34.23366 -32.57524 -31.93971 -30.06839 -29.65398 -27.81592 -25.51130 -25.30514 -24.06882 -23.48777 -22.25327 -21.48765 -20.90623 -19.97696 -18.67450 -18.48012 -17.59082 -17.37504 -16.94208 -16.84359 -16.37692 -16.03084 -15.92109 -15.62281 -15.24686 -14.94574 -14.76814 -14.62366 -14.52980 -14.38755 -13.63882 -13.35293 -13.27410 -13.08227 -12.97443 -12.94574 -12.72916 -12.64265 -12.41004 -12.27911 -12.07401 -11.88241 -11.54957 -11.39355 -11.28861 -10.86088 -10.73551 -10.26628 -9.92489 -9.10660 -8.89430 -7.91169 -5.21400 -0.10978 0.41517 0.52503 1.16958 1.40228 1.41580 1.49887 1.99906 2.41958 2.51268 2.77531 3.21501 3.31061 3.42106 3.89276 3.97124 3.99060 4.03843 4.08215 4.33459 4.36818 4.44704 4.46822 4.57636 4.69510 4.81932 4.85003 4.88279 5.03827 5.05576 5.07465 5.10083 5.15452 5.25787 5.33075 5.33608 5.40339 5.60240 5.65933 5.73627 5.83257 5.96941 6.02595 6.22484 6.58793 6.79355 6.94160 7.62738 8.57498 9.25909 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014405 B = 0.003156 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.307401 B = 8871.122267 C =10204.939749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C -0.114 4.114 4 C -0.135 4.135 5 C 0.109 3.891 6 N -0.632 5.632 7 C 0.509 3.491 8 O -0.522 6.522 9 C 0.509 3.491 10 O -0.541 6.541 11 N -0.680 5.680 12 C 0.128 3.872 13 C 0.127 3.873 14 H 0.070 0.930 15 C -0.125 4.125 16 C 0.150 3.850 17 N -0.632 5.632 18 C -0.214 4.214 19 H 0.078 0.922 20 C -0.066 4.066 21 N -0.950 5.950 22 Si 0.960 3.040 23 H -0.289 1.289 24 H -0.292 1.292 25 H -0.276 1.276 26 C -0.135 4.135 27 C -0.105 4.105 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.139 0.861 32 H 0.121 0.879 33 H 0.431 0.569 34 H 0.413 0.587 35 H 0.057 0.943 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.038 0.962 40 H 0.021 0.979 41 H 0.247 0.753 42 H 0.148 0.852 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.296 -6.025 -18.224 23.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.132 4.132 4 C -0.155 4.155 5 C 0.016 3.984 6 N -0.279 5.279 7 C 0.291 3.709 8 O -0.397 6.397 9 C 0.289 3.711 10 O -0.420 6.420 11 N -0.330 5.330 12 C 0.004 3.996 13 C 0.021 3.979 14 H 0.087 0.913 15 C -0.164 4.164 16 C 0.025 3.975 17 N -0.358 5.358 18 C -0.343 4.343 19 H 0.096 0.904 20 C -0.259 4.259 21 N -0.599 5.599 22 Si 0.789 3.211 23 H -0.217 1.217 24 H -0.219 1.219 25 H -0.201 1.201 26 C -0.155 4.155 27 C -0.123 4.123 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.156 0.844 32 H 0.139 0.861 33 H 0.271 0.729 34 H 0.250 0.750 35 H 0.076 0.924 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.115 0.885 39 H 0.056 0.944 40 H 0.039 0.961 41 H 0.056 0.944 42 H 0.166 0.834 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -14.361 -6.083 -17.907 23.747 hybrid contribution -0.362 0.097 1.273 1.327 sum -14.723 -5.986 -16.634 23.006 Atomic orbital electron populations 1.20831 0.88961 1.03677 1.03306 1.20350 0.97850 0.92728 0.99259 1.21181 0.92892 0.99139 1.00009 1.21324 0.95294 0.97420 1.01490 1.17983 0.81483 0.95256 1.03647 1.43005 1.05245 1.30140 1.49542 1.20317 0.88659 0.82819 0.79107 1.90780 1.69766 1.34040 1.45106 1.19861 0.87744 0.83073 0.80460 1.90731 1.69844 1.34324 1.47080 1.45852 1.09050 1.27051 1.51078 1.21866 0.77340 0.99511 1.00878 1.22736 0.95286 0.95558 0.84286 0.91269 1.23560 0.94058 1.02462 0.96295 1.22154 0.85477 0.94893 0.94996 1.46455 1.17741 1.69927 1.01689 1.19215 0.98344 1.29114 0.87646 0.90383 1.25458 0.99579 1.02896 0.97942 1.69992 1.26535 1.53390 1.10009 0.85337 0.79666 0.77208 0.78872 1.21662 1.21895 1.20103 1.21217 0.95245 0.96408 1.02625 1.21217 0.92919 0.98914 0.99244 0.89900 0.90300 0.91162 0.84364 0.86082 0.72946 0.75042 0.92444 0.88293 0.89764 0.88492 0.94370 0.96068 0.94431 0.83416 0.82699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.18 10.01 71.24 0.71 -0.47 16 2 C -0.10 -1.71 5.88 -19.84 -0.12 -1.83 16 3 C -0.11 -2.34 9.69 22.25 0.22 -2.12 16 4 C -0.14 -3.45 8.70 22.40 0.19 -3.25 16 5 C 0.11 2.63 6.30 38.21 0.24 2.87 16 6 N -0.63 -15.58 5.32 -304.83 -1.62 -17.20 16 7 C 0.51 15.58 7.73 87.24 0.67 16.26 16 8 O -0.52 -18.42 13.91 -3.33 -0.05 -18.47 16 9 C 0.51 16.43 7.89 87.24 0.69 17.12 16 10 O -0.54 -18.39 16.48 -3.27 -0.05 -18.45 16 11 N -0.68 -22.68 5.50 -464.51 -2.56 -25.23 16 12 C 0.13 4.18 5.54 86.38 0.48 4.66 16 13 C 0.13 4.56 4.33 45.09 0.20 4.75 16 14 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 15 C -0.13 -4.11 7.86 31.25 0.25 -3.86 16 16 C 0.15 6.81 7.46 86.48 0.64 7.46 16 17 N -0.63 -30.64 3.57 -694.12 -2.48 -33.12 16 18 C -0.21 -11.78 10.50 84.03 0.88 -10.89 16 19 H 0.08 4.19 7.79 -2.91 -0.02 4.17 16 20 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 21 N -0.95 -57.58 11.47 21.65 0.25 -57.33 16 22 Si 0.96 47.19 29.56 68.60 2.03 49.22 16 23 H -0.29 -14.08 7.11 99.48 0.71 -13.38 16 24 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.28 -13.20 7.11 99.48 0.71 -12.50 16 26 C -0.14 -2.52 9.97 22.40 0.22 -2.30 16 27 C -0.10 -1.66 9.69 22.25 0.22 -1.45 16 28 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.08 0.66 8.08 -2.39 -0.02 0.64 16 30 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 31 H 0.14 2.34 8.06 -2.91 -0.02 2.31 16 32 H 0.12 3.48 6.22 -2.91 -0.02 3.46 16 33 H 0.43 8.69 8.30 -92.71 -0.77 7.92 16 34 H 0.41 14.41 7.94 -92.71 -0.74 13.67 16 35 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 37 H 0.08 2.68 8.10 -2.39 -0.02 2.66 16 38 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.04 1.97 7.29 -2.39 -0.02 1.95 16 40 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 42 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.16 1.53 8.06 -2.91 -0.02 1.50 16 Total: -1.00 -71.46 367.31 1.02 -70.44 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: -0.46 Total: 26.52 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 5.96 Total: 23.63 kcal Atomic # 7 Polarization: -126.47 SS G_CDS: -6.41 Total: -132.88 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.10 Total: -36.92 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.22 kcal Total: -71.46 1.02 -70.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754502848.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.662 kcal (2) G-P(sol) polarization free energy of solvation -71.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds