Wall clock time and date at job start Tue Mar 31 2020 11:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38858 * 119.41075 * 2 1 4 4 C 1.38210 * 119.71186 * 180.02562 * 3 2 1 5 5 C 1.39295 * 118.33968 * 359.97438 * 4 3 2 6 6 O 1.34579 * 133.42913 * 180.02562 * 5 4 3 7 7 C 1.34863 * 110.82094 * 180.02562 * 6 5 4 8 8 C 1.47173 * 125.13129 * 180.02562 * 7 6 5 9 9 O 1.21636 * 119.99870 * 174.07888 * 8 7 6 10 10 N 1.34771 * 120.00027 * 353.80305 * 8 7 6 11 11 C 1.46505 * 119.99961 * 354.63401 * 10 8 7 12 12 C 1.46497 * 119.99948 * 174.63380 * 10 8 7 13 13 C 1.52997 * 109.47395 * 90.00135 * 12 10 8 14 14 H 1.09004 * 109.47024 * 295.00370 * 13 12 10 15 15 C 1.52997 * 109.47751 * 174.99799 * 13 12 10 16 16 N 1.46502 * 109.47025 * 54.99893 * 13 12 10 17 17 C 1.36937 * 120.00006 * 205.00787 * 16 13 12 18 18 H 1.08004 * 120.00347 * 359.97438 * 17 16 13 19 19 C 1.38818 * 119.99999 * 180.02562 * 17 16 13 20 20 N 1.31619 * 119.99665 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00041 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47149 * 90.00176 * 21 19 17 23 23 H 1.48495 * 109.46952 * 210.00462 * 21 19 17 24 24 H 1.48497 * 109.46852 * 330.00453 * 21 19 17 25 25 C 1.35748 * 109.73862 * 0.26214 * 7 6 5 26 26 C 1.40677 * 118.77382 * 0.02562 * 5 4 3 27 27 N 1.31438 * 119.40500 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47489 * 90.00329 * 1 2 3 29 29 H 1.09007 * 109.47235 * 210.00066 * 1 2 3 30 30 H 1.09000 * 109.47073 * 330.00048 * 1 2 3 31 31 H 1.07998 * 120.14557 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.82984 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.46485 * 85.16399 * 11 10 8 34 34 H 1.08995 * 109.47061 * 205.16041 * 11 10 8 35 35 H 1.08997 * 109.46771 * 325.16595 * 11 10 8 36 36 H 1.09001 * 109.47246 * 210.00074 * 12 10 8 37 37 H 1.08994 * 109.47453 * 329.99842 * 12 10 8 38 38 H 1.08994 * 109.47579 * 180.02562 * 15 13 12 39 39 H 1.08997 * 109.46952 * 300.00376 * 15 13 12 40 40 H 1.09002 * 109.46663 * 59.99855 * 15 13 12 41 41 H 0.96999 * 120.00180 * 24.99719 * 16 13 12 42 42 H 0.97003 * 119.99955 * 179.97438 * 20 19 17 43 43 H 1.08008 * 126.93346 * 179.69871 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1888 1.2096 0.0000 4 6 3.5709 1.2169 -0.0005 5 6 4.2386 -0.0056 -0.0005 6 8 5.5398 -0.3491 -0.0005 7 6 5.6815 -1.6903 -0.0011 8 6 6.9675 -2.4060 -0.0007 9 8 6.9893 -3.6174 0.1075 10 7 8.1206 -1.7198 -0.1257 11 6 8.0908 -0.2772 -0.3796 12 6 9.4040 -2.4164 -0.0076 13 6 9.8457 -2.9090 -1.3871 14 1 9.1422 -3.6597 -1.7472 15 6 11.2421 -3.5259 -1.2854 16 7 9.8771 -1.7811 -2.3215 17 6 9.7343 -2.0013 -3.6655 18 1 9.5991 -3.0064 -4.0368 19 6 9.7646 -0.9326 -4.5509 20 7 9.6279 -1.1443 -5.8428 21 14 9.9992 0.8059 -3.9090 22 1 11.4487 1.1250 -3.8625 23 1 9.3101 1.7637 -4.8106 24 1 9.4252 0.9109 -2.5435 25 6 4.4591 -2.2805 -0.0073 26 6 3.4809 -1.1910 -0.0005 27 7 2.1523 -1.1451 -0.0005 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6416 2.1407 0.0004 32 1 4.1195 2.1472 -0.0001 33 1 8.0004 0.2564 0.5665 34 1 9.0117 0.0228 -0.8794 35 1 7.2380 -0.0378 -1.0148 36 1 10.1533 -1.7324 0.3910 37 1 9.2950 -3.2675 0.6644 38 1 11.5570 -3.8765 -2.2683 39 1 11.9456 -2.7752 -0.9253 40 1 11.2188 -4.3651 -0.5902 41 1 9.9987 -0.8784 -1.9882 42 1 9.6486 -0.3975 -6.4615 43 1 4.2500 -3.3401 -0.0138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755614635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:10 Heat of formation + Delta-G solvation = 32.988921 kcal Electronic energy + Delta-G solvation = -26597.596429 eV Core-core repulsion = 22838.566873 eV Total energy + Delta-G solvation = -3759.029557 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.85755 -39.89402 -39.09444 -36.67233 -34.51653 -33.43530 -32.68766 -32.09594 -30.95021 -29.62536 -28.14275 -27.04856 -26.10889 -24.07643 -23.23090 -22.64057 -21.80190 -20.57119 -19.95077 -18.04681 -17.81848 -17.63019 -16.77293 -16.20803 -15.82929 -15.79789 -15.17141 -14.77344 -14.40776 -14.22656 -13.90621 -13.83810 -13.41055 -13.29710 -13.22700 -12.81643 -12.71136 -12.57699 -12.50114 -12.46145 -12.35605 -11.86738 -11.66080 -11.47327 -10.96935 -10.77962 -10.71792 -10.62173 -10.23987 -10.06961 -9.69972 -9.58160 -9.08623 -8.99132 -8.83711 -8.43264 -7.29254 -5.78391 -3.13881 0.28830 0.86590 1.62452 2.22309 2.92010 3.16925 3.23237 3.32111 3.39303 3.45363 3.70441 4.21722 4.30865 4.50215 4.53664 4.66572 4.87276 5.03182 5.13361 5.19897 5.27320 5.30640 5.37994 5.42873 5.50004 5.53760 5.60389 5.64043 5.65216 5.69140 5.90411 5.96059 6.07351 6.10219 6.13365 6.15828 6.42755 6.51791 6.70170 6.77326 6.99994 7.35260 7.63502 7.98008 8.05174 8.39754 9.17634 9.89406 10.08816 11.40250 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014402 B = 0.003907 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.744044 B = 7164.113120 C = 8217.670386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.126 3.874 3 C -0.145 4.145 4 C -0.055 4.055 5 C 0.005 3.995 6 O -0.169 6.169 7 C 0.010 3.990 8 C 0.597 3.403 9 O -0.513 6.513 10 N -0.583 5.583 11 C 0.076 3.924 12 C 0.107 3.893 13 C 0.158 3.842 14 H 0.063 0.937 15 C -0.162 4.162 16 N -0.745 5.745 17 C -0.237 4.237 18 H 0.090 0.910 19 C 0.003 3.997 20 N -0.934 5.934 21 Si 0.880 3.120 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.275 1.275 25 C -0.112 4.112 26 C 0.073 3.927 27 N -0.442 5.442 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.150 0.850 32 H 0.147 0.853 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.357 0.643 42 H 0.259 0.741 43 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.912 6.169 16.605 21.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.020 4.020 3 C -0.164 4.164 4 C -0.082 4.082 5 C -0.045 4.045 6 O -0.070 6.070 7 C -0.042 4.042 8 C 0.382 3.618 9 O -0.390 6.390 10 N -0.313 5.313 11 C -0.067 4.067 12 C -0.015 4.015 13 C 0.048 3.952 14 H 0.081 0.919 15 C -0.223 4.223 16 N -0.390 5.390 17 C -0.367 4.367 18 H 0.107 0.893 19 C -0.192 4.192 20 N -0.582 5.582 21 Si 0.711 3.289 22 H -0.212 1.212 23 H -0.218 1.218 24 H -0.201 1.201 25 C -0.134 4.134 26 C -0.057 4.057 27 N -0.152 5.152 28 H 0.099 0.901 29 H 0.097 0.903 30 H 0.096 0.904 31 H 0.167 0.833 32 H 0.165 0.835 33 H 0.074 0.926 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.062 0.938 41 H 0.191 0.809 42 H 0.069 0.931 43 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -13.080 4.808 16.427 21.542 hybrid contribution 0.667 2.213 0.065 2.312 sum -12.413 7.021 16.492 21.803 Atomic orbital electron populations 1.20703 0.88049 1.03647 1.03406 1.21321 0.97214 0.87459 0.96021 1.21846 0.93102 0.99797 1.01705 1.20479 0.93490 0.94907 0.99301 1.20653 0.83077 0.96847 1.03949 1.84294 1.24135 1.22818 1.75721 1.22212 0.96209 0.80145 1.05657 1.16675 0.81117 0.85981 0.77983 1.90869 1.85485 1.11698 1.50958 1.47525 1.05655 1.09528 1.68578 1.22168 1.04629 0.79026 1.00874 1.22047 0.82768 0.97487 0.99235 1.20648 0.95202 0.91170 0.88141 0.91866 1.22334 0.98723 0.99530 1.01683 1.42811 1.88916 1.03245 1.03981 1.19073 1.41441 0.95435 0.80718 0.89251 1.24663 1.02264 0.97181 0.95135 1.69698 1.57263 1.30408 1.00841 0.86696 0.77896 0.86508 0.77819 1.21185 1.21840 1.20124 1.22448 0.88126 0.99888 1.02893 1.20588 0.90247 0.92167 1.02675 1.66838 1.07193 1.29608 1.11562 0.90131 0.90286 0.90440 0.83266 0.83481 0.92636 0.89538 0.90331 0.90355 0.89327 0.91938 0.93530 0.93838 0.80911 0.93123 0.80501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.69 10.16 36.00 0.37 -0.32 16 2 C 0.13 1.33 6.78 -82.53 -0.56 0.77 16 3 C -0.14 -1.27 9.71 -39.36 -0.38 -1.65 16 4 C -0.06 -0.57 10.19 -39.20 -0.40 -0.97 16 5 C 0.01 0.07 7.42 -38.27 -0.28 -0.21 16 6 O -0.17 -2.50 7.36 3.40 0.03 -2.48 16 7 C 0.01 0.15 6.67 -36.85 -0.25 -0.09 16 8 C 0.60 10.38 7.64 -12.64 -0.10 10.28 16 9 O -0.51 -9.89 16.47 5.25 0.09 -9.80 16 10 N -0.58 -9.58 2.73 -182.95 -0.50 -10.08 16 11 C 0.08 1.15 8.86 59.85 0.53 1.68 16 12 C 0.11 1.67 4.99 -4.05 -0.02 1.65 16 13 C 0.16 3.02 3.20 -67.93 -0.22 2.80 16 14 H 0.06 1.37 8.08 -51.93 -0.42 0.95 16 15 C -0.16 -2.74 9.49 37.16 0.35 -2.39 16 16 N -0.75 -16.86 4.37 -53.42 -0.23 -17.10 16 17 C -0.24 -6.57 10.41 -15.06 -0.16 -6.72 16 18 H 0.09 2.72 8.06 -52.48 -0.42 2.30 16 19 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 20 N -0.93 -29.25 13.97 55.49 0.78 -28.48 16 21 Si 0.88 21.22 27.74 -169.99 -4.71 16.51 16 22 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.27 -5.83 5.03 56.52 0.28 -5.55 16 25 C -0.11 -1.70 10.81 -37.18 -0.40 -2.11 16 26 C 0.07 1.08 7.52 -83.17 -0.63 0.46 16 27 N -0.44 -6.14 10.32 -6.13 -0.06 -6.20 16 28 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.08 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.08 0.33 8.07 -51.93 -0.42 -0.09 16 31 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 32 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.09 1.41 4.22 -51.93 -0.22 1.19 16 35 H 0.08 1.28 5.92 -51.93 -0.31 0.97 16 36 H 0.08 1.04 8.07 -51.93 -0.42 0.62 16 37 H 0.09 1.29 7.51 -51.93 -0.39 0.90 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.36 7.70 3.50 -40.82 -0.14 7.56 16 42 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 43 H 0.18 2.46 8.06 -52.48 -0.42 2.04 16 LS Contribution 356.30 15.07 5.37 5.37 Total: -1.00 -34.12 356.30 -7.29 -41.41 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -5.80 Total: 7.69 kcal Atomic # 6 Polarization: 5.40 SS G_CDS: -2.24 Total: 3.17 kcal Atomic # 7 Polarization: -61.84 SS G_CDS: -0.02 Total: -61.86 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.11 Total: -12.28 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.71 Total: 16.51 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.12 -7.29 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755614635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.396 kcal (2) G-P(sol) polarization free energy of solvation -34.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds