Wall clock time and date at job start Tue Mar 31 2020 11:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38858 * 119.41075 * 2 1 4 4 C 1.38210 * 119.71186 * 180.02562 * 3 2 1 5 5 C 1.39295 * 118.33968 * 359.97438 * 4 3 2 6 6 O 1.34579 * 133.42913 * 180.02562 * 5 4 3 7 7 C 1.34863 * 110.82094 * 180.02562 * 6 5 4 8 8 C 1.47173 * 125.13129 * 180.02562 * 7 6 5 9 9 O 1.21636 * 119.99870 * 174.07888 * 8 7 6 10 10 N 1.34771 * 120.00027 * 353.80305 * 8 7 6 11 11 C 1.46505 * 119.99961 * 354.63401 * 10 8 7 12 12 C 1.46497 * 119.99948 * 174.63380 * 10 8 7 13 13 C 1.52997 * 109.47395 * 90.00135 * 12 10 8 14 14 H 1.09004 * 109.47024 * 295.00370 * 13 12 10 15 15 C 1.52997 * 109.47751 * 174.99799 * 13 12 10 16 16 N 1.46502 * 109.47025 * 54.99893 * 13 12 10 17 17 C 1.36937 * 120.00006 * 205.00787 * 16 13 12 18 18 H 1.08004 * 120.00347 * 359.97438 * 17 16 13 19 19 C 1.38818 * 119.99999 * 180.02562 * 17 16 13 20 20 N 1.31619 * 119.99665 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00041 * 359.97438 * 19 17 16 22 22 H 1.48498 * 109.47149 * 90.00176 * 21 19 17 23 23 H 1.48495 * 109.46952 * 210.00462 * 21 19 17 24 24 H 1.48497 * 109.46852 * 330.00453 * 21 19 17 25 25 C 1.35748 * 109.73862 * 0.26214 * 7 6 5 26 26 C 1.40677 * 118.77382 * 0.02562 * 5 4 3 27 27 N 1.31438 * 119.40500 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47489 * 90.00329 * 1 2 3 29 29 H 1.09007 * 109.47235 * 210.00066 * 1 2 3 30 30 H 1.09000 * 109.47073 * 330.00048 * 1 2 3 31 31 H 1.07998 * 120.14557 * 0.02562 * 3 2 1 32 32 H 1.08003 * 120.82984 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.46485 * 85.16399 * 11 10 8 34 34 H 1.08995 * 109.47061 * 205.16041 * 11 10 8 35 35 H 1.08997 * 109.46771 * 325.16595 * 11 10 8 36 36 H 1.09001 * 109.47246 * 210.00074 * 12 10 8 37 37 H 1.08994 * 109.47453 * 329.99842 * 12 10 8 38 38 H 1.08994 * 109.47579 * 180.02562 * 15 13 12 39 39 H 1.08997 * 109.46952 * 300.00376 * 15 13 12 40 40 H 1.09002 * 109.46663 * 59.99855 * 15 13 12 41 41 H 0.96999 * 120.00180 * 24.99719 * 16 13 12 42 42 H 0.97003 * 119.99955 * 179.97438 * 20 19 17 43 43 H 1.08008 * 126.93346 * 179.69871 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1888 1.2096 0.0000 4 6 3.5709 1.2169 -0.0005 5 6 4.2386 -0.0056 -0.0005 6 8 5.5398 -0.3491 -0.0005 7 6 5.6815 -1.6903 -0.0011 8 6 6.9675 -2.4060 -0.0007 9 8 6.9893 -3.6174 0.1075 10 7 8.1206 -1.7198 -0.1257 11 6 8.0908 -0.2772 -0.3796 12 6 9.4040 -2.4164 -0.0076 13 6 9.8457 -2.9090 -1.3871 14 1 9.1422 -3.6597 -1.7472 15 6 11.2421 -3.5259 -1.2854 16 7 9.8771 -1.7811 -2.3215 17 6 9.7343 -2.0013 -3.6655 18 1 9.5991 -3.0064 -4.0368 19 6 9.7646 -0.9326 -4.5509 20 7 9.6279 -1.1443 -5.8428 21 14 9.9992 0.8059 -3.9090 22 1 11.4487 1.1250 -3.8625 23 1 9.3101 1.7637 -4.8106 24 1 9.4252 0.9109 -2.5435 25 6 4.4591 -2.2805 -0.0073 26 6 3.4809 -1.1910 -0.0005 27 7 2.1523 -1.1451 -0.0005 28 1 -0.3634 -0.0001 -1.0277 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6416 2.1407 0.0004 32 1 4.1195 2.1472 -0.0001 33 1 8.0004 0.2564 0.5665 34 1 9.0117 0.0228 -0.8794 35 1 7.2380 -0.0378 -1.0148 36 1 10.1533 -1.7324 0.3910 37 1 9.2950 -3.2675 0.6644 38 1 11.5570 -3.8765 -2.2683 39 1 11.9456 -2.7752 -0.9253 40 1 11.2188 -4.3651 -0.5902 41 1 9.9987 -0.8784 -1.9882 42 1 9.6486 -0.3975 -6.4615 43 1 4.2500 -3.3401 -0.0138 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755614635.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:09 Heat of formation + Delta-G solvation = 9.588185 kcal Electronic energy + Delta-G solvation = -26598.611162 eV Core-core repulsion = 22838.566873 eV Total energy + Delta-G solvation = -3760.044289 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.88026 -41.11322 -40.08026 -38.20332 -36.07184 -34.38728 -34.10969 -33.44296 -32.00281 -31.41109 -29.11364 -28.26960 -27.26371 -25.60080 -24.71266 -23.51028 -22.87804 -21.99315 -21.32153 -19.77120 -19.17482 -18.72921 -17.87831 -17.48505 -17.03994 -16.62213 -16.55842 -16.47305 -15.63457 -15.45025 -15.17779 -14.97566 -14.78210 -14.50352 -14.27192 -14.14614 -14.11911 -13.83161 -13.49792 -13.31849 -13.29645 -13.13363 -13.02651 -12.81446 -12.74151 -12.43039 -12.24961 -11.79965 -11.75908 -11.69573 -11.51394 -11.01961 -10.57753 -10.11560 -9.88191 -9.66131 -9.28451 -8.01055 -5.34970 -0.71139 -0.00671 0.58537 1.14060 1.31641 1.41777 1.48114 1.72155 1.94635 2.49057 2.56327 2.72364 3.28094 3.30374 3.39132 3.53587 3.69102 3.74067 3.97195 4.07679 4.11750 4.18753 4.28837 4.43475 4.51690 4.59007 4.61800 4.67085 4.72274 4.78059 4.80121 4.83950 4.87306 5.02882 5.06392 5.07484 5.22058 5.25076 5.37815 5.56542 5.71255 5.77684 6.07332 6.21274 6.74595 6.77027 7.08559 7.81303 8.04460 9.21114 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014402 B = 0.003907 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1943.744044 B = 7164.113120 C = 8217.670386 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.120 3.880 3 C -0.125 4.125 4 C -0.057 4.057 5 C -0.013 4.013 6 O -0.168 6.168 7 C -0.009 4.009 8 C 0.592 3.408 9 O -0.544 6.544 10 N -0.586 5.586 11 C 0.075 3.925 12 C 0.113 3.887 13 C 0.153 3.847 14 H 0.025 0.975 15 C -0.153 4.153 16 N -0.742 5.742 17 C -0.224 4.224 18 H 0.042 0.958 19 C -0.070 4.070 20 N -0.990 5.990 21 Si 0.952 3.048 22 H -0.279 1.279 23 H -0.301 1.301 24 H -0.228 1.228 25 C -0.119 4.119 26 C 0.042 3.958 27 N -0.476 5.476 28 H 0.090 0.910 29 H 0.071 0.929 30 H 0.112 0.888 31 H 0.199 0.801 32 H 0.180 0.820 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.115 0.885 37 H 0.101 0.899 38 H 0.031 0.969 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.367 0.633 42 H 0.256 0.744 43 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.774 9.873 19.355 25.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.027 4.027 3 C -0.145 4.145 4 C -0.083 4.083 5 C -0.063 4.063 6 O -0.069 6.069 7 C -0.061 4.061 8 C 0.379 3.621 9 O -0.424 6.424 10 N -0.315 5.315 11 C -0.067 4.067 12 C -0.010 4.010 13 C 0.044 3.956 14 H 0.043 0.957 15 C -0.213 4.213 16 N -0.387 5.387 17 C -0.355 4.355 18 H 0.060 0.940 19 C -0.260 4.260 20 N -0.641 5.641 21 Si 0.778 3.222 22 H -0.205 1.205 23 H -0.228 1.228 24 H -0.152 1.152 25 C -0.141 4.141 26 C -0.087 4.087 27 N -0.188 5.188 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.130 0.870 31 H 0.216 0.784 32 H 0.198 0.802 33 H 0.109 0.891 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.133 0.867 37 H 0.119 0.881 38 H 0.050 0.950 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.203 0.797 42 H 0.064 0.936 43 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -13.923 8.500 19.247 25.230 hybrid contribution 0.736 1.004 -0.808 1.484 sum -13.187 9.504 18.439 24.581 Atomic orbital electron populations 1.20856 0.85413 1.05026 1.04370 1.22147 0.99029 0.87372 0.94151 1.22437 0.92625 1.00951 0.98442 1.21044 0.94264 0.94728 0.98221 1.21152 0.82463 0.97933 1.04735 1.84227 1.24884 1.21821 1.75932 1.21878 0.95583 0.80969 1.07684 1.16888 0.81878 0.85796 0.77500 1.90835 1.86109 1.12984 1.52510 1.47660 1.05579 1.10208 1.68016 1.22251 1.03573 0.78379 1.02513 1.22067 0.83228 0.98944 0.96714 1.20806 0.95815 0.89535 0.89412 0.95719 1.22185 0.97217 1.01006 1.00878 1.42680 1.88869 1.04809 1.02367 1.18920 1.39918 0.93449 0.83259 0.93977 1.25578 1.02722 1.02549 0.95160 1.69922 1.59551 1.31832 1.02777 0.85535 0.78105 0.79255 0.79268 1.20491 1.22842 1.15241 1.22605 0.88803 1.00323 1.02332 1.20625 0.90983 0.92381 1.04677 1.66858 1.06886 1.31791 1.13235 0.89189 0.91031 0.86990 0.78400 0.80237 0.89141 0.90125 0.91618 0.86705 0.88114 0.94988 0.91463 0.90855 0.79725 0.93554 0.80748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.04 10.16 71.23 0.72 -0.32 16 2 C 0.12 2.23 6.78 42.76 0.29 2.52 16 3 C -0.13 -1.67 9.71 22.41 0.22 -1.45 16 4 C -0.06 -0.98 10.19 22.52 0.23 -0.75 16 5 C -0.01 -0.33 7.42 23.12 0.17 -0.16 16 6 O -0.17 -4.86 7.36 -10.76 -0.08 -4.94 16 7 C -0.01 -0.30 6.67 24.04 0.16 -0.14 16 8 C 0.59 20.95 7.64 86.59 0.66 21.61 16 9 O -0.54 -21.83 16.47 -4.14 -0.07 -21.90 16 10 N -0.59 -18.53 2.73 -850.97 -2.32 -20.85 16 11 C 0.07 2.07 8.86 127.77 1.13 3.20 16 12 C 0.11 3.28 4.99 86.38 0.43 3.71 16 13 C 0.15 5.82 3.20 44.99 0.14 5.96 16 14 H 0.02 1.12 8.08 -2.38 -0.02 1.10 16 15 C -0.15 -5.00 9.49 71.98 0.68 -4.32 16 16 N -0.74 -33.30 4.37 -322.93 -1.41 -34.71 16 17 C -0.22 -12.88 10.41 84.03 0.87 -12.00 16 18 H 0.04 2.76 8.06 -2.91 -0.02 2.73 16 19 C -0.07 -4.09 5.50 84.86 0.47 -3.62 16 20 N -0.99 -64.49 13.97 21.65 0.30 -64.19 16 21 Si 0.95 43.40 27.74 68.60 1.90 45.30 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 24 H -0.23 -8.55 5.03 99.48 0.50 -8.05 16 25 C -0.12 -3.82 10.81 23.82 0.26 -3.57 16 26 C 0.04 1.25 7.52 41.70 0.31 1.56 16 27 N -0.48 -13.08 10.32 -173.31 -1.79 -14.87 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 30 H 0.11 0.41 8.07 -2.39 -0.02 0.39 16 31 H 0.20 0.67 8.06 -2.91 -0.02 0.65 16 32 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 33 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.08 2.31 4.22 -2.39 -0.01 2.30 16 35 H 0.07 2.02 5.92 -2.39 -0.01 2.00 16 36 H 0.11 2.56 8.07 -2.39 -0.02 2.54 16 37 H 0.10 2.74 7.51 -2.39 -0.02 2.72 16 38 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.37 14.98 3.50 -92.71 -0.32 14.66 16 42 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 43 H 0.18 5.36 8.06 -2.91 -0.02 5.33 16 Total: -1.00 -81.09 356.30 3.80 -77.29 By element: Atomic # 1 Polarization: 26.14 SS G_CDS: 0.51 Total: 26.65 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 6.76 Total: 12.23 kcal Atomic # 7 Polarization: -129.41 SS G_CDS: -5.22 Total: -134.63 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.15 Total: -26.84 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 1.90 Total: 45.30 kcal Total: -81.09 3.80 -77.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755614635.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.877 kcal (2) G-P(sol) polarization free energy of solvation -81.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.289 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds