Wall clock time and date at job start Tue Mar 31 2020 11:14:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00200 * 2 1 4 4 C 1.52999 * 109.47378 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46783 * 65.00318 * 4 3 2 6 6 C 1.46499 * 119.99901 * 274.58626 * 5 4 3 7 7 C 1.50702 * 109.47095 * 263.44043 * 6 5 4 8 8 H 1.07999 * 119.99888 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99927 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00091 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 119.99802 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.46922 * 90.00512 * 11 9 7 13 13 H 1.48501 * 109.46920 * 210.00403 * 11 9 7 14 14 H 1.48504 * 109.47156 * 330.00523 * 11 9 7 15 15 C 1.34781 * 120.00046 * 94.58869 * 5 4 3 16 16 O 1.21587 * 119.99790 * 4.24597 * 15 5 4 17 17 C 1.47589 * 119.99761 * 184.25031 * 15 5 4 18 18 C 1.36574 * 125.91606 * 173.96461 * 17 15 5 19 19 N 1.36194 * 107.09515 * 180.02562 * 18 17 15 20 20 C 1.37269 * 107.34113 * 359.97438 * 19 18 17 21 21 C 1.41183 * 119.57848 * 180.02562 * 20 19 18 22 22 C 1.35903 * 119.34584 * 0.02562 * 21 20 19 23 23 C 1.40573 * 119.72739 * 359.97438 * 22 21 20 24 24 C 1.34847 * 120.34599 * 0.28006 * 23 22 21 25 25 C 1.50693 * 119.68387 * 179.69693 * 24 23 22 26 26 N 1.32238 * 108.37415 * 0.02562 * 20 19 18 27 27 H 1.09000 * 109.46803 * 59.99637 * 1 2 3 28 28 H 1.08997 * 109.46901 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.46636 * 299.99815 * 1 2 3 30 30 H 1.09006 * 109.46727 * 60.00526 * 3 2 1 31 31 H 1.08997 * 109.47113 * 300.00149 * 3 2 1 32 32 H 1.08998 * 109.47662 * 305.00613 * 4 3 2 33 33 H 1.08999 * 109.47280 * 184.99814 * 4 3 2 34 34 H 1.09005 * 109.47308 * 23.44312 * 6 5 4 35 35 H 1.08994 * 109.47350 * 143.44602 * 6 5 4 36 36 H 0.97004 * 119.99657 * 179.97438 * 10 9 7 37 37 H 1.08000 * 126.45501 * 0.02562 * 18 17 15 38 38 H 1.08001 * 120.32828 * 180.02562 * 21 20 19 39 39 H 1.07993 * 120.13579 * 180.02562 * 22 21 20 40 40 H 1.07998 * 119.82414 * 180.02562 * 23 22 21 41 41 H 1.09001 * 109.47137 * 89.99719 * 25 24 23 42 42 H 1.08996 * 109.47899 * 209.99852 * 25 24 23 43 43 H 1.09004 * 109.47044 * 330.00556 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5640 -1.2510 6 6 4.0101 -0.8955 -1.3728 7 6 5.4056 -1.3911 -1.0937 8 1 6.1892 -0.6891 -0.8495 9 6 5.6818 -2.7408 -1.1490 10 7 4.7275 -3.5957 -1.4459 11 14 7.4115 -3.3552 -0.8023 12 1 7.5547 -3.6382 0.6484 13 1 7.6597 -4.5981 -1.5761 14 1 8.3951 -2.3175 -1.2037 15 6 4.3518 1.3358 -2.2903 16 8 4.3981 2.5442 -2.1645 17 6 4.7064 0.7140 -3.5810 18 6 4.9890 1.3791 -4.7399 19 7 5.2622 0.4377 -5.6853 20 6 5.1421 -0.7913 -5.0857 21 6 5.3733 -1.9611 -5.8416 22 6 5.7122 -1.8505 -7.1531 23 6 5.8273 -0.5776 -7.7384 24 6 5.6089 0.5321 -7.0041 25 6 5.7430 1.8894 -7.6450 26 7 4.8070 -0.6066 -3.8199 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.6887 1.8463 0.8901 31 1 1.6887 1.8463 -0.8899 32 1 3.8509 0.5684 0.8426 33 1 3.9785 2.1765 0.0902 34 1 3.3177 -1.3360 -0.6553 35 1 3.7179 -1.1826 -2.3829 36 1 4.9220 -4.5452 -1.4852 37 1 4.9946 2.4499 -4.8802 38 1 5.2818 -2.9342 -5.3822 39 1 5.8915 -2.7369 -7.7433 40 1 6.0961 -0.4880 -8.7805 41 1 4.7813 2.1924 -8.0589 42 1 6.0613 2.6149 -6.8965 43 1 6.4835 1.8425 -8.4435 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771617596.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:16 Heat of formation + Delta-G solvation = 6.163842 kcal Electronic energy + Delta-G solvation = -27196.098988 eV Core-core repulsion = 23435.906209 eV Total energy + Delta-G solvation = -3760.192779 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.77571 -40.68172 -38.78484 -38.20428 -36.59313 -35.03784 -34.42835 -32.47872 -31.14370 -30.23033 -28.75460 -28.08802 -27.21256 -25.62513 -24.66284 -23.63447 -23.27937 -22.09922 -20.12010 -18.94424 -18.44463 -17.80828 -17.72728 -17.15312 -17.05262 -17.00398 -16.44070 -16.30374 -15.92681 -15.78882 -15.31833 -15.15309 -14.74826 -14.48360 -14.20905 -14.04871 -13.56609 -13.47451 -13.30900 -13.16164 -13.08256 -12.78701 -12.71864 -12.62815 -12.38096 -12.22845 -12.10202 -11.96124 -11.87057 -11.58610 -11.14568 -10.66390 -10.58232 -10.15598 -9.79257 -9.34582 -8.71140 -7.99138 -6.05387 -0.24049 0.31952 1.18937 1.37593 1.37980 1.47819 1.57258 2.31322 2.41112 2.51438 2.73502 2.95694 3.28555 3.32655 3.45429 3.74441 3.89659 4.11138 4.13763 4.22101 4.25897 4.33747 4.38444 4.51767 4.55483 4.60349 4.65407 4.69532 4.71464 4.82982 4.83776 4.89235 5.07551 5.19258 5.20211 5.31917 5.39106 5.60326 5.68741 5.97483 5.99293 6.20456 6.30722 6.33991 6.59878 6.85257 7.05499 7.33563 7.57650 9.08597 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009696 B = 0.005799 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.966012 B = 4826.997612 C = 6553.002716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.057 3.943 4 C 0.110 3.890 5 N -0.578 5.578 6 C 0.255 3.745 7 C -0.507 4.507 8 H 0.028 0.972 9 C 0.030 3.970 10 N -0.915 5.915 11 Si 0.941 3.059 12 H -0.274 1.274 13 H -0.277 1.277 14 H -0.285 1.285 15 C 0.588 3.412 16 O -0.590 6.590 17 C -0.023 4.023 18 C -0.026 4.026 19 N -0.363 5.363 20 C 0.192 3.808 21 C -0.112 4.112 22 C -0.080 4.080 23 C -0.136 4.136 24 C 0.065 3.935 25 C -0.112 4.112 26 N -0.445 5.445 27 H 0.041 0.959 28 H 0.086 0.914 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.015 0.985 35 H 0.060 0.940 36 H 0.259 0.741 37 H 0.213 0.787 38 H 0.135 0.865 39 H 0.178 0.822 40 H 0.197 0.803 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.062 8.283 -13.790 16.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.331 6.331 3 C -0.020 4.020 4 C -0.013 4.013 5 N -0.306 5.306 6 C 0.135 3.865 7 C -0.546 4.546 8 H 0.047 0.953 9 C -0.169 4.169 10 N -0.555 5.555 11 Si 0.768 3.232 12 H -0.200 1.200 13 H -0.202 1.202 14 H -0.211 1.211 15 C 0.376 3.624 16 O -0.474 6.474 17 C -0.156 4.156 18 C -0.163 4.163 19 N -0.035 5.035 20 C -0.053 4.053 21 C -0.133 4.133 22 C -0.104 4.104 23 C -0.156 4.156 24 C -0.037 4.037 25 C -0.168 4.168 26 N -0.164 5.164 27 H 0.059 0.941 28 H 0.104 0.896 29 H 0.080 0.920 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.119 0.881 34 H 0.033 0.967 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.229 0.771 38 H 0.153 0.847 39 H 0.195 0.805 40 H 0.214 0.786 41 H 0.115 0.885 42 H 0.088 0.912 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -2.131 7.956 -13.088 15.464 hybrid contribution 0.745 0.008 0.335 0.817 sum -1.386 7.964 -12.754 15.100 Atomic orbital electron populations 1.22865 0.80001 1.03248 1.00664 1.88046 1.21218 1.28347 1.95475 1.22936 0.93158 0.84803 1.01094 1.21634 0.93365 0.99735 0.86543 1.48121 1.61015 1.09474 1.11979 1.19442 0.95401 0.72782 0.98870 1.21323 0.95346 0.91892 1.46074 0.95339 1.25333 0.99507 0.96691 0.95385 1.70049 1.33282 1.02172 1.50029 0.85849 0.81523 0.77584 0.78286 1.20003 1.20246 1.21099 1.17260 0.76722 0.85283 0.83099 1.90614 1.58367 1.13974 1.84402 1.20687 1.09201 0.90596 0.95111 1.22546 1.10440 0.96121 0.87154 1.43016 1.43436 1.07803 1.09238 1.21824 1.06054 0.87482 0.89923 1.20499 1.02990 0.94962 0.94809 1.21470 0.96174 0.99973 0.92742 1.21191 1.02676 0.89441 1.02309 1.21222 1.00787 1.01081 0.80564 1.21052 1.05391 0.88858 1.01543 1.71600 1.18129 1.15618 1.11098 0.94078 0.89555 0.92013 0.89321 0.94109 0.90300 0.88101 0.96674 0.92260 0.93143 0.77083 0.84674 0.80469 0.78572 0.88488 0.91232 0.86170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.41 -16.10 9.22 -148.98 -1.37 -17.48 16 3 C 0.06 1.99 6.28 71.98 0.45 2.45 16 4 C 0.11 4.49 5.91 86.38 0.51 5.00 16 5 N -0.58 -28.59 2.46 -829.84 -2.04 -30.64 16 6 C 0.26 14.45 4.51 85.63 0.39 14.83 16 7 C -0.51 -30.38 8.40 25.60 0.22 -30.17 16 8 H 0.03 1.77 7.81 -2.91 -0.02 1.74 16 9 C 0.03 1.75 5.46 84.66 0.46 2.21 16 10 N -0.91 -55.60 13.29 21.45 0.28 -55.31 16 11 Si 0.94 46.86 29.54 68.60 2.03 48.89 16 12 H -0.27 -13.18 7.11 99.48 0.71 -12.47 16 13 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 14 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 15 C 0.59 28.77 7.61 86.71 0.66 29.43 16 16 O -0.59 -28.35 16.37 -3.99 -0.07 -28.42 16 17 C -0.02 -1.06 6.63 40.80 0.27 -0.79 16 18 C -0.03 -0.98 10.79 83.63 0.90 -0.07 16 19 N -0.36 -12.18 2.93 -337.97 -0.99 -13.17 16 20 C 0.19 7.96 7.79 134.20 1.05 9.01 16 21 C -0.11 -3.80 10.11 22.45 0.23 -3.57 16 22 C -0.08 -1.75 10.06 22.30 0.22 -1.52 16 23 C -0.14 -2.38 9.58 22.06 0.21 -2.17 16 24 C 0.07 1.46 6.78 41.02 0.28 1.74 16 25 C -0.11 -1.45 9.84 71.23 0.70 -0.75 16 26 N -0.44 -22.31 7.07 -183.50 -1.30 -23.61 16 27 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 29 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.08 3.28 8.11 -2.39 -0.02 3.26 16 33 H 0.10 3.83 7.24 -2.39 -0.02 3.81 16 34 H 0.02 0.92 6.85 -2.38 -0.02 0.91 16 35 H 0.06 3.63 5.28 -2.39 -0.01 3.61 16 36 H 0.26 14.89 8.31 -92.70 -0.77 14.12 16 37 H 0.21 6.32 7.78 -2.91 -0.02 6.29 16 38 H 0.14 4.88 8.06 -2.91 -0.02 4.86 16 39 H 0.18 2.41 8.06 -2.91 -0.02 2.38 16 40 H 0.20 1.41 8.06 -2.91 -0.02 1.38 16 41 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.07 1.02 7.47 -2.39 -0.02 1.00 16 43 H 0.12 0.78 8.07 -2.38 -0.02 0.76 16 Total: -1.00 -82.41 362.90 5.35 -77.06 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: 1.02 Total: 15.00 kcal Atomic # 6 Polarization: 19.88 SS G_CDS: 7.79 Total: 27.68 kcal Atomic # 7 Polarization: -118.68 SS G_CDS: -4.05 Total: -122.73 kcal Atomic # 8 Polarization: -44.45 SS G_CDS: -1.44 Total: -45.89 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -82.41 5.35 -77.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771617596.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.220 kcal (2) G-P(sol) polarization free energy of solvation -82.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds