Wall clock time and date at job start Tue Mar 31 2020 12:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46722 * 2 1 4 4 C 1.52992 * 109.47145 * 120.00150 * 2 1 3 5 5 H 1.09004 * 109.47365 * 303.89330 * 4 2 1 6 6 C 1.50697 * 109.47243 * 183.89466 * 4 2 1 7 7 O 1.21294 * 119.99968 * 264.99946 * 6 4 2 8 8 N 1.34780 * 120.00329 * 84.99716 * 6 4 2 9 9 C 1.37092 * 120.00271 * 180.02562 * 8 6 4 10 10 H 1.08007 * 120.00199 * 359.97438 * 9 8 6 11 11 C 1.38949 * 120.00070 * 180.02562 * 9 8 6 12 12 N 1.31418 * 119.99972 * 179.97438 * 11 9 8 13 13 Si 1.86794 * 120.00110 * 359.97438 * 11 9 8 14 14 H 1.48505 * 109.47319 * 89.99966 * 13 11 9 15 15 H 1.48496 * 109.47409 * 210.00246 * 13 11 9 16 16 H 1.48508 * 109.47240 * 330.00074 * 13 11 9 17 17 S 1.81402 * 109.47239 * 63.89357 * 4 2 1 18 18 O 1.42099 * 108.57689 * 59.62361 * 17 4 2 19 19 O 1.42093 * 108.57630 * 288.59702 * 17 4 2 20 20 C 1.81404 * 101.92097 * 174.11074 * 17 4 2 21 21 C 1.52996 * 109.47019 * 177.64032 * 20 17 4 22 22 C 1.52997 * 109.47393 * 179.97438 * 21 20 17 23 23 C 1.53005 * 109.46918 * 59.99668 * 22 21 20 24 24 C 1.52996 * 109.47360 * 300.00352 * 23 22 21 25 25 C 1.52996 * 109.47202 * 57.63615 * 20 17 4 26 26 H 1.08998 * 109.47454 * 293.12790 * 1 2 3 27 27 H 1.08996 * 109.47532 * 53.13181 * 1 2 3 28 28 H 1.09004 * 109.47344 * 173.13128 * 1 2 3 29 29 H 1.09000 * 109.47052 * 240.00305 * 2 1 3 30 30 H 1.09006 * 109.47120 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.47644 * 300.00371 * 3 2 1 32 32 H 1.09009 * 109.46950 * 60.00240 * 3 2 1 33 33 H 0.97001 * 119.99973 * 0.02562 * 8 6 4 34 34 H 0.96994 * 119.99993 * 179.97438 * 12 11 9 35 35 H 1.09004 * 109.47133 * 297.63890 * 20 17 4 36 36 H 1.09001 * 109.47420 * 59.99610 * 21 20 17 37 37 H 1.09004 * 109.47052 * 299.99907 * 21 20 17 38 38 H 1.09001 * 109.47337 * 179.97438 * 22 21 20 39 39 H 1.08997 * 109.47271 * 300.00334 * 22 21 20 40 40 H 1.09004 * 109.46994 * 60.00333 * 23 22 21 41 41 H 1.09004 * 109.46756 * 180.02562 * 23 22 21 42 42 H 1.09004 * 109.47052 * 299.99945 * 24 23 22 43 43 H 1.09001 * 109.47420 * 180.02562 * 24 23 22 44 44 H 1.08991 * 109.47354 * 300.00170 * 25 20 17 45 45 H 1.09004 * 109.46852 * 60.00103 * 25 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6208 -0.2493 2.1378 6 6 3.5438 -0.6382 1.2984 7 8 4.2161 -1.5447 0.8539 8 7 4.1419 0.4432 1.8363 9 6 5.5100 0.5190 1.8806 10 1 6.1087 -0.2882 1.4848 11 6 6.1265 1.6337 2.4356 12 7 7.4380 1.7060 2.4785 13 14 5.0912 3.0294 3.1208 14 1 4.8100 2.7782 4.5571 15 1 5.8294 4.3099 2.9774 16 1 3.8110 3.1096 2.3724 17 16 1.5320 -2.4618 1.1922 18 8 2.0808 -3.0555 0.0237 19 8 0.1301 -2.5316 1.4131 20 6 2.3803 -3.1473 2.6418 21 6 2.0167 -4.6257 2.7935 22 6 2.7326 -5.2041 4.0157 23 6 2.2993 -4.4410 5.2691 24 6 2.6629 -2.9626 5.1173 25 6 1.9465 -2.3841 3.8948 26 1 -0.3634 0.4036 0.9450 27 1 -0.3634 0.6165 -0.8221 28 1 -0.3634 -1.0203 -0.1229 29 1 1.8933 -0.5138 -0.8900 30 1 3.1299 1.4426 0.0005 31 1 1.6765 1.9564 -0.8899 32 1 1.6765 1.9563 0.8901 33 1 3.6043 1.1680 2.1921 34 1 7.8683 2.4843 2.8656 35 1 3.4581 -3.0497 2.5119 36 1 2.3257 -5.1694 1.9008 37 1 0.9389 -4.7233 2.9234 38 1 2.4733 -6.2572 4.1241 39 1 3.8104 -5.1065 3.8855 40 1 1.2215 -4.5386 5.3994 41 1 2.8098 -4.8528 6.1398 42 1 3.7407 -2.8650 4.9870 43 1 2.3546 -2.4190 6.0104 44 1 2.2055 -1.3309 3.7867 45 1 0.8686 -2.4817 4.0247 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103078607.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:27 Heat of formation + Delta-G solvation = -132.682933 kcal Electronic energy + Delta-G solvation = -27123.174731 eV Core-core repulsion = 23460.112304 eV Total energy + Delta-G solvation = -3663.062427 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 317.149 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -39.18179 -38.31926 -36.71519 -35.91771 -35.41515 -34.29779 -31.86058 -31.15763 -30.87876 -28.50619 -27.13880 -24.77047 -23.06645 -22.76101 -20.69527 -19.96151 -19.78419 -18.90112 -18.15034 -16.99099 -16.69408 -15.92324 -15.42571 -15.08265 -14.79683 -14.71566 -14.23171 -14.14038 -14.07109 -13.43229 -13.28536 -13.14238 -12.74101 -12.62091 -12.48988 -12.47773 -12.23205 -12.06905 -12.01294 -11.65115 -11.58842 -11.45457 -11.36362 -11.20591 -11.13918 -10.96262 -10.77922 -10.69798 -10.51761 -10.38216 -10.20180 -10.14365 -9.76931 -9.61461 -8.88830 -8.39536 -6.51700 -4.03359 0.28410 2.86476 2.91808 2.95120 3.02669 3.35249 3.78959 3.92234 4.07366 4.40619 4.50422 4.60427 4.77633 4.82645 4.92133 5.09577 5.12405 5.14895 5.18460 5.24172 5.33540 5.44722 5.45718 5.50894 5.54552 5.67027 5.72355 5.73983 5.86738 5.86959 5.98970 6.01248 6.09603 6.10546 6.11963 6.14515 6.15103 6.32212 6.39659 6.46742 7.31090 7.89405 8.30816 8.70271 9.17935 9.50409 10.60016 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.012357 B = 0.006283 C = 0.004894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2265.393962 B = 4455.419777 C = 5720.461227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.070 4.070 3 C -0.153 4.153 4 C -0.594 4.594 5 H 0.139 0.861 6 C 0.464 3.536 7 O -0.562 6.562 8 N -0.563 5.563 9 C -0.310 4.310 10 H 0.126 0.874 11 C 0.049 3.951 12 N -0.867 5.867 13 Si 0.871 3.129 14 H -0.268 1.268 15 H -0.273 1.273 16 H -0.266 1.266 17 S 2.441 3.559 18 O -0.919 6.919 19 O -0.948 6.948 20 C -0.567 4.567 21 C -0.103 4.103 22 C -0.111 4.111 23 C -0.120 4.120 24 C -0.113 4.113 25 C -0.108 4.108 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.374 0.626 34 H 0.277 0.723 35 H 0.155 0.845 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.071 0.929 43 H 0.066 0.934 44 H 0.074 0.926 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.450 -4.661 4.390 14.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.090 4.090 3 C -0.211 4.211 4 C -0.705 4.705 5 H 0.157 0.843 6 C 0.249 3.751 7 O -0.446 6.446 8 N -0.200 5.200 9 C -0.439 4.439 10 H 0.143 0.857 11 C -0.156 4.156 12 N -0.506 5.506 13 Si 0.697 3.303 14 H -0.193 1.193 15 H -0.198 1.198 16 H -0.191 1.191 17 S 2.624 3.376 18 O -0.916 6.916 19 O -0.945 6.945 20 C -0.677 4.677 21 C -0.142 4.142 22 C -0.149 4.149 23 C -0.158 4.158 24 C -0.151 4.151 25 C -0.146 4.146 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.086 0.914 29 H 0.110 0.890 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.208 0.792 34 H 0.088 0.912 35 H 0.173 0.827 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.340 -5.542 3.523 14.868 hybrid contribution -0.065 1.887 1.168 2.220 sum -13.405 -3.655 4.690 14.664 Atomic orbital electron populations 1.22229 0.93953 1.03471 1.03199 1.20790 0.95802 0.97899 0.94518 1.22023 1.03237 0.93969 1.01906 1.30658 1.05696 1.26287 1.07870 0.84310 1.18295 0.85390 0.85628 0.85811 1.90718 1.64093 1.38638 1.51177 1.42225 1.07825 1.17187 1.52737 1.19522 0.79312 1.06807 1.38235 0.85683 1.25053 0.95662 0.97671 0.97224 1.69609 1.07786 1.30161 1.43006 0.86800 0.80492 0.82857 0.80194 1.19293 1.19777 1.19079 1.07601 0.75339 0.77185 0.77482 1.93555 1.79892 1.73716 1.44402 1.93517 1.28522 1.85764 1.86698 1.30194 1.16149 1.05899 1.15506 1.21324 1.01299 0.91114 1.00437 1.21454 1.00888 0.98861 0.93744 1.21561 1.01172 0.95463 0.97599 1.21459 1.01271 0.95603 0.96781 1.21435 1.01135 0.98864 0.93168 0.91542 0.91165 0.91391 0.88988 0.90543 0.91895 0.92517 0.79232 0.91241 0.82699 0.90408 0.90644 0.91500 0.91175 0.91916 0.91804 0.90988 0.91495 0.90776 0.90261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.24 8.57 37.16 0.32 -1.92 16 2 C -0.07 -1.10 2.48 -90.63 -0.22 -1.32 16 3 C -0.15 -2.28 8.27 37.16 0.31 -1.98 16 4 C -0.59 -9.97 1.51 -27.89 -0.04 -10.02 16 5 H 0.14 1.83 7.15 -51.92 -0.37 1.46 16 6 C 0.46 9.82 5.43 -10.99 -0.06 9.76 16 7 O -0.56 -14.00 13.82 -9.50 -0.13 -14.13 16 8 N -0.56 -12.32 3.81 -10.96 -0.04 -12.36 16 9 C -0.31 -8.11 10.16 -14.94 -0.15 -8.26 16 10 H 0.13 3.75 7.39 -52.48 -0.39 3.36 16 11 C 0.05 1.25 5.50 -17.47 -0.10 1.16 16 12 N -0.87 -23.83 13.96 55.50 0.77 -23.05 16 13 Si 0.87 18.01 27.74 -169.99 -4.71 13.30 16 14 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 15 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 16 H -0.27 -4.96 6.52 56.52 0.37 -4.59 16 17 S 2.44 41.86 3.10 -107.50 -0.33 41.53 16 18 O -0.92 -19.23 17.15 -64.32 -1.10 -20.34 16 19 O -0.95 -16.05 15.93 -57.83 -0.92 -16.98 16 20 C -0.57 -8.62 2.09 -26.74 -0.06 -8.67 16 21 C -0.10 -1.36 5.21 -26.73 -0.14 -1.50 16 22 C -0.11 -1.25 5.92 -26.73 -0.16 -1.41 16 23 C -0.12 -1.26 5.92 -26.73 -0.16 -1.41 16 24 C -0.11 -1.33 5.92 -26.71 -0.16 -1.49 16 25 C -0.11 -1.39 4.95 -26.71 -0.13 -1.53 16 26 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.95 6.14 -51.93 -0.32 0.63 16 29 H 0.09 1.54 8.09 -51.93 -0.42 1.12 16 30 H 0.08 1.35 6.25 -51.93 -0.32 1.03 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.75 8.14 -51.92 -0.42 0.33 16 33 H 0.37 7.23 5.19 -40.82 -0.21 7.01 16 34 H 0.28 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.16 2.66 6.71 -51.92 -0.35 2.31 16 36 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.07 0.93 6.62 -51.93 -0.34 0.58 16 45 H 0.08 0.90 8.12 -51.93 -0.42 0.48 16 LS Contribution 355.85 15.07 5.36 5.36 Total: -1.00 -32.04 355.85 -9.25 -41.29 By element: Atomic # 1 Polarization: 21.36 SS G_CDS: -7.39 Total: 13.97 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: -0.75 Total: -28.59 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 0.73 Total: -35.41 kcal Atomic # 8 Polarization: -49.29 SS G_CDS: -2.16 Total: -51.44 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -4.71 Total: 13.30 kcal Atomic # 16 Polarization: 41.86 SS G_CDS: -0.33 Total: 41.53 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.04 -9.25 -41.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103078607.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.392 kcal (2) G-P(sol) polarization free energy of solvation -32.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds