Wall clock time and date at job start Tue Mar 31 2020 11:04:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34854 * 119.10528 * 2 1 4 4 C 1.41674 * 119.34483 * 179.77607 * 3 2 1 5 5 O 1.22083 * 121.07198 * 180.21281 * 4 3 2 6 6 C 1.47096 * 117.85827 * 0.42413 * 4 3 2 7 7 C 1.47287 * 120.88044 * 179.81731 * 6 4 3 8 8 O 1.21621 * 119.99882 * 34.53598 * 7 6 4 9 9 N 1.34779 * 120.00230 * 214.53373 * 7 6 4 10 10 C 1.47164 * 120.70582 * 354.27587 * 9 7 6 11 11 C 1.55894 * 107.94768 * 132.45179 * 10 9 7 12 12 H 1.08996 * 112.45732 * 181.84835 * 11 10 9 13 13 C 1.54550 * 108.44173 * 307.13254 * 11 10 9 14 14 C 1.53730 * 104.95261 * 88.29229 * 13 11 10 15 15 C 1.54541 * 104.95528 * 359.97438 * 14 13 11 16 16 H 1.09002 * 112.17666 * 146.29149 * 15 14 13 17 17 C 1.47156 * 120.71246 * 174.29565 * 9 7 6 18 18 N 1.48305 * 104.35725 * 24.58317 * 15 14 13 19 19 C 1.36939 * 128.07655 * 139.07626 * 18 15 14 20 20 H 1.07994 * 119.99802 * 36.24471 * 19 18 15 21 21 C 1.38810 * 119.99979 * 216.23584 * 19 18 15 22 22 N 1.31624 * 120.00074 * 178.29999 * 21 19 18 23 23 Si 1.86802 * 120.00037 * 358.30981 * 21 19 18 24 24 H 1.48500 * 109.46953 * 273.52461 * 23 21 19 25 25 H 1.48494 * 109.47257 * 33.52574 * 23 21 19 26 26 H 1.48501 * 109.47123 * 153.52800 * 23 21 19 27 27 C 1.37990 * 118.23718 * 359.53819 * 6 4 3 28 28 N 1.34347 * 120.36997 * 0.27453 * 27 6 4 29 29 H 0.97009 * 118.80280 * 179.97438 * 28 27 6 30 30 H 1.09001 * 109.46970 * 270.02294 * 1 2 3 31 31 H 1.09005 * 109.46716 * 30.02124 * 1 2 3 32 32 H 1.08993 * 109.47580 * 150.02019 * 1 2 3 33 33 H 1.08007 * 120.32858 * 359.97438 * 3 2 1 34 34 H 1.08994 * 109.75396 * 252.41003 * 10 9 7 35 35 H 1.08998 * 109.74995 * 13.10027 * 10 9 7 36 36 H 1.09000 * 110.35976 * 207.00431 * 13 11 10 37 37 H 1.08992 * 110.36429 * 329.20843 * 13 11 10 38 38 H 1.09006 * 110.41439 * 241.06340 * 14 13 11 39 39 H 1.08995 * 110.21201 * 118.82230 * 14 13 11 40 40 H 1.09005 * 109.74927 * 107.58520 * 17 9 7 41 41 H 1.09000 * 109.79109 * 346.88109 * 17 9 7 42 42 H 0.96996 * 119.99999 * 180.02562 * 22 21 19 43 43 H 1.08005 * 119.81299 * 180.25835 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1630 1.1783 0.0000 4 6 3.5797 1.1842 0.0048 5 8 4.2054 2.2325 0.0089 6 6 4.2725 -0.1134 0.0000 7 6 5.7436 -0.1849 0.0006 8 8 6.3928 0.6499 0.6014 9 7 6.3705 -1.1753 -0.6647 10 6 5.6025 -2.2631 -1.2913 11 6 6.1375 -2.4544 -2.7431 12 1 5.5944 -3.2261 -3.2886 13 6 6.1076 -1.0853 -3.4595 14 6 7.4637 -0.4380 -3.1347 15 6 8.1968 -1.4709 -2.2493 16 1 9.2739 -1.4650 -2.4162 17 6 7.8375 -1.1924 -0.7796 18 7 7.5805 -2.7700 -2.6127 19 6 8.2002 -3.9779 -2.7921 20 1 9.0389 -4.2522 -2.1696 21 6 7.7501 -4.8498 -3.7740 22 7 8.3665 -5.9963 -3.9689 23 14 6.2697 -4.3958 -4.8190 24 1 5.0259 -4.8129 -4.1230 25 1 6.2476 -2.9267 -5.0343 26 1 6.3587 -5.0871 -6.1302 27 6 3.5076 -1.2619 0.0009 28 7 2.1664 -1.1847 0.0005 29 1 1.6509 -2.0065 0.0008 30 1 -0.3633 0.0004 1.0277 31 1 -0.3633 0.8899 -0.5142 32 1 -0.3634 -0.8901 -0.5135 33 1 1.6137 2.1082 -0.0004 34 1 5.7331 -3.1824 -0.7206 35 1 4.5461 -1.9967 -1.3239 36 1 6.0042 -1.2227 -4.5358 37 1 5.2909 -0.4741 -3.0757 38 1 7.3190 0.4943 -2.5888 39 1 8.0244 -0.2583 -4.0519 40 1 8.2476 -1.9779 -0.1448 41 1 8.2425 -0.2264 -0.4782 42 1 8.0522 -6.6054 -4.6553 43 1 3.9899 -2.2283 0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029540921.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:04 Heat of formation + Delta-G solvation = 32.620854 kcal Electronic energy + Delta-G solvation = -27981.545347 eV Core-core repulsion = 24222.499830 eV Total energy + Delta-G solvation = -3759.045517 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.31828 -39.94188 -38.11656 -37.36719 -34.36802 -33.36528 -32.46766 -31.61985 -30.75238 -29.98966 -28.41201 -26.51387 -24.52497 -24.26132 -23.17677 -22.33850 -20.91857 -20.26879 -19.05097 -18.19798 -17.82647 -16.76702 -16.59797 -16.20986 -15.77015 -15.49193 -15.15127 -14.84476 -14.38531 -13.92152 -13.61787 -13.51671 -13.38794 -13.28929 -13.16551 -13.12673 -12.94521 -12.80193 -12.55743 -12.25719 -11.94646 -11.85986 -11.28115 -11.15988 -10.77356 -10.59559 -10.24912 -9.96367 -9.87403 -9.77225 -9.52935 -9.44089 -9.12410 -8.76110 -8.33624 -8.13351 -6.95306 -6.05659 -3.55191 0.79340 1.15496 2.45909 3.06524 3.13069 3.31554 3.32030 3.38149 3.81894 3.98203 4.30294 4.37890 4.48514 4.65529 4.73214 4.85596 4.89257 5.11541 5.16009 5.25361 5.28550 5.39791 5.43277 5.50946 5.56904 5.59866 5.66204 5.82559 6.00020 6.04787 6.18589 6.24116 6.30211 6.34213 6.46533 6.46940 6.50212 6.61178 6.66988 6.79828 7.02389 7.73133 7.84440 8.12086 8.22516 8.62470 8.67762 9.52934 10.16503 11.09056 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.016941 B = 0.004871 C = 0.004206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.426681 B = 5746.528565 C = 6655.537507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.156 3.844 3 C -0.274 4.274 4 C 0.412 3.588 5 O -0.489 6.489 6 C -0.291 4.291 7 C 0.574 3.426 8 O -0.530 6.530 9 N -0.593 5.593 10 C 0.072 3.928 11 C 0.123 3.877 12 H 0.077 0.923 13 C -0.127 4.127 14 C -0.125 4.125 15 C 0.138 3.862 16 H 0.089 0.911 17 C 0.107 3.893 18 N -0.599 5.599 19 C -0.243 4.243 20 H 0.089 0.911 21 C 0.031 3.969 22 N -0.911 5.911 23 Si 0.885 3.115 24 H -0.288 1.288 25 H -0.252 1.252 26 H -0.304 1.304 27 C 0.153 3.847 28 N -0.581 5.581 29 H 0.421 0.579 30 H 0.089 0.911 31 H 0.093 0.907 32 H 0.077 0.923 33 H 0.151 0.849 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.265 0.735 43 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.227 6.679 6.211 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.049 3.951 3 C -0.298 4.298 4 C 0.298 3.702 5 O -0.371 6.371 6 C -0.301 4.301 7 C 0.362 3.638 8 O -0.406 6.406 9 N -0.326 5.326 10 C -0.053 4.053 11 C 0.015 3.985 12 H 0.095 0.905 13 C -0.166 4.166 14 C -0.164 4.164 15 C 0.031 3.969 16 H 0.107 0.893 17 C -0.017 4.017 18 N -0.321 5.321 19 C -0.370 4.370 20 H 0.106 0.894 21 C -0.169 4.169 22 N -0.553 5.553 23 Si 0.717 3.283 24 H -0.216 1.216 25 H -0.177 1.177 26 H -0.233 1.233 27 C 0.023 3.977 28 N -0.187 5.187 29 H 0.257 0.743 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.096 0.904 33 H 0.168 0.832 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.075 0.925 43 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -17.409 7.429 6.414 19.985 hybrid contribution -1.204 -0.637 -0.696 1.530 sum -18.613 6.791 5.717 20.621 Atomic orbital electron populations 1.21094 0.87987 1.04887 1.04270 1.20287 0.94750 0.85641 0.94449 1.22205 0.96218 0.97277 1.14102 1.18126 0.88268 0.87737 0.76041 1.90798 1.70065 1.33361 1.42882 1.22510 0.94853 0.95043 1.17736 1.17465 0.85917 0.81111 0.79340 1.90777 1.66550 1.39885 1.43431 1.47901 1.07649 1.24131 1.52932 1.23500 0.94766 0.89795 0.97262 1.22646 0.88867 0.94993 0.91947 0.90535 1.22473 0.97454 0.96331 1.00323 1.22350 0.96320 0.98029 0.99722 1.22063 0.97602 0.86137 0.91122 0.89286 1.22318 0.78583 1.01870 0.98894 1.45381 0.99941 1.04488 1.82339 1.18586 1.14667 0.90549 1.13244 0.89359 1.25354 0.98594 0.96947 0.96032 1.69729 1.40681 1.10212 1.34718 0.86920 0.82278 0.79448 0.79611 1.21630 1.17682 1.23255 1.22950 0.82410 1.00983 0.91323 1.40788 1.05967 1.08899 1.63092 0.74308 0.89284 0.88812 0.90424 0.83184 0.90547 0.90478 0.91613 0.92545 0.92090 0.92125 0.91544 0.89928 0.92547 0.79652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.36 10.03 36.01 0.36 0.00 16 2 C 0.16 1.11 6.78 -82.13 -0.56 0.55 16 3 C -0.27 -3.06 9.57 -39.47 -0.38 -3.44 16 4 C 0.41 6.83 6.94 -34.68 -0.24 6.59 16 5 O -0.49 -10.48 16.92 -9.11 -0.15 -10.64 16 6 C -0.29 -4.45 5.68 -102.72 -0.58 -5.03 16 7 C 0.57 10.74 7.36 -12.58 -0.09 10.65 16 8 O -0.53 -12.05 15.75 -8.69 -0.14 -12.18 16 9 N -0.59 -10.38 2.29 -171.61 -0.39 -10.77 16 10 C 0.07 1.14 4.47 -2.13 -0.01 1.13 16 11 C 0.12 2.37 2.87 -64.59 -0.19 2.18 16 12 H 0.08 1.56 3.15 -51.93 -0.16 1.40 16 13 C -0.13 -2.31 5.87 -25.54 -0.15 -2.46 16 14 C -0.13 -2.28 6.18 -25.54 -0.16 -2.44 16 15 C 0.14 2.68 4.27 -65.69 -0.28 2.40 16 16 H 0.09 1.71 8.14 -51.93 -0.42 1.28 16 17 C 0.11 1.96 5.89 -3.25 -0.02 1.94 16 18 N -0.60 -13.27 2.47 -151.45 -0.37 -13.65 16 19 C -0.24 -6.41 10.82 -15.06 -0.16 -6.57 16 20 H 0.09 2.53 8.06 -52.49 -0.42 2.11 16 21 C 0.03 0.84 5.50 -17.43 -0.10 0.75 16 22 N -0.91 -26.77 13.97 55.49 0.78 -25.99 16 23 Si 0.88 20.61 24.65 -169.99 -4.19 16.42 16 24 H -0.29 -6.36 6.96 56.52 0.39 -5.97 16 25 H -0.25 -5.53 4.26 56.52 0.24 -5.29 16 26 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 27 C 0.15 1.52 8.65 -16.54 -0.14 1.38 16 28 N -0.58 -3.66 5.16 -9.00 -0.05 -3.71 16 29 H 0.42 0.93 8.70 -40.82 -0.35 0.57 16 30 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.24 8.06 -51.93 -0.42 -0.18 16 32 H 0.08 0.09 8.12 -51.93 -0.42 -0.33 16 33 H 0.15 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.08 1.20 8.09 -51.93 -0.42 0.78 16 35 H 0.08 0.97 3.86 -51.93 -0.20 0.77 16 36 H 0.07 1.22 6.46 -51.93 -0.34 0.89 16 37 H 0.06 0.96 7.88 -51.93 -0.41 0.55 16 38 H 0.06 1.11 7.86 -51.93 -0.41 0.70 16 39 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.53 7.17 -51.93 -0.37 1.15 16 42 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 43 H 0.19 1.53 5.33 -52.48 -0.28 1.25 16 LS Contribution 332.10 15.07 5.00 5.00 Total: -1.00 -38.08 332.10 -7.83 -45.92 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.62 Total: 1.97 kcal Atomic # 6 Polarization: 10.32 SS G_CDS: -2.69 Total: 7.63 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.04 Total: -54.12 kcal Atomic # 8 Polarization: -22.53 SS G_CDS: -0.29 Total: -22.82 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.19 Total: 16.42 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -38.08 -7.83 -45.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029540921.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.539 kcal (2) G-P(sol) polarization free energy of solvation -38.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds