Wall clock time and date at job start Tue Mar 31 2020 11:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34869 * 119.09922 * 2 1 4 4 C 1.41673 * 119.34084 * 180.02562 * 3 2 1 5 5 O 1.22084 * 121.06662 * 180.02562 * 4 3 2 6 6 C 1.47098 * 117.85725 * 359.97438 * 4 3 2 7 7 C 1.47287 * 120.87679 * 179.97438 * 6 4 3 8 8 O 1.21619 * 120.00320 * 353.72293 * 7 6 4 9 9 N 1.34776 * 119.99954 * 173.71661 * 7 6 4 10 10 C 1.47888 * 134.34530 * 174.47529 * 9 7 6 11 11 C 1.52369 * 85.59207 * 156.51959 * 10 9 7 12 12 C 1.47892 * 134.34370 * 354.48325 * 9 7 6 13 13 C 1.53655 * 116.39174 * 141.36447 * 11 10 9 14 14 C 1.54602 * 102.73376 * 95.48370 * 13 11 10 15 15 N 1.47129 * 107.36633 * 20.75517 * 14 13 11 16 16 C 1.36939 * 125.58626 * 180.66851 * 15 14 13 17 17 H 1.08001 * 119.99669 * 180.02562 * 16 15 14 18 18 C 1.38809 * 120.00376 * 0.02562 * 16 15 14 19 19 N 1.31626 * 119.99656 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 120.00321 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47537 * 89.99863 * 20 18 16 22 22 H 1.48504 * 109.47344 * 210.00158 * 20 18 16 23 23 H 1.48500 * 109.46980 * 329.99779 * 20 18 16 24 24 C 1.47724 * 108.82604 * 0.92771 * 15 14 13 25 25 C 1.37990 * 118.23946 * 0.25591 * 6 4 3 26 26 N 1.34341 * 120.36915 * 359.46081 * 25 6 4 27 27 H 0.96999 * 118.80147 * 180.28444 * 26 25 6 28 28 H 1.09001 * 109.46698 * 90.00121 * 1 2 3 29 29 H 1.08998 * 109.47036 * 209.99728 * 1 2 3 30 30 H 1.08996 * 109.47152 * 330.00406 * 1 2 3 31 31 H 1.08008 * 120.32835 * 359.97438 * 3 2 1 32 32 H 1.09006 * 113.85378 * 42.35025 * 10 9 7 33 33 H 1.09000 * 113.97041 * 270.69729 * 10 9 7 34 34 H 1.09002 * 113.85782 * 89.31046 * 12 9 7 35 35 H 1.09007 * 113.85235 * 317.64840 * 12 9 7 36 36 H 1.09006 * 110.75584 * 337.17138 * 13 11 10 37 37 H 1.09001 * 110.75858 * 213.79643 * 13 11 10 38 38 H 1.09005 * 109.86317 * 261.30648 * 14 13 11 39 39 H 1.08998 * 109.97881 * 140.26836 * 14 13 11 40 40 H 0.96996 * 119.99669 * 180.02562 * 19 18 16 41 41 H 1.09000 * 110.40250 * 96.33733 * 24 15 14 42 42 H 1.08996 * 110.40181 * 218.74665 * 24 15 14 43 43 H 1.08003 * 119.81568 * 179.72413 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1785 0.0000 4 6 3.5797 1.1844 -0.0006 5 8 4.2052 2.2328 -0.0001 6 6 4.2725 -0.1132 -0.0005 7 6 5.7436 -0.1846 -0.0016 8 8 6.4017 0.8316 -0.1178 9 7 6.3606 -1.3760 0.1261 10 6 7.7690 -1.8226 0.0644 11 6 7.3078 -3.0057 0.9065 12 6 5.8984 -2.7570 0.3838 13 6 7.9312 -4.3689 0.5685 14 6 9.0995 -4.4685 1.5761 15 7 8.8073 -3.5414 2.6805 16 6 9.6062 -3.3244 3.7713 17 1 9.3021 -2.6204 4.5318 18 6 10.8068 -4.0091 3.8997 19 7 11.1771 -4.8675 2.9731 20 14 11.8961 -3.7137 5.3880 21 1 11.5257 -4.6622 6.4688 22 1 13.3171 -3.9233 5.0109 23 1 11.7117 -2.3204 5.8676 24 6 7.5079 -2.8876 2.4228 25 6 3.5076 -1.2617 -0.0054 26 7 2.1665 -1.1846 0.0009 27 1 1.6511 -2.0064 0.0015 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 1.6136 2.1084 -0.0004 32 1 8.4647 -1.1597 0.5791 33 1 8.1030 -2.0973 -0.9361 34 1 5.6581 -3.3173 -0.5198 35 1 5.1255 -2.8276 1.1492 36 1 8.3027 -4.3804 -0.4562 37 1 7.2128 -5.1727 0.7292 38 1 10.0329 -4.1837 1.0903 39 1 9.1765 -5.4866 1.9576 40 1 12.0158 -5.3463 3.0629 41 1 6.7095 -3.4068 2.9530 42 1 7.5441 -1.8397 2.7207 43 1 3.9899 -2.2281 -0.0100 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073101607.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:59 Heat of formation + Delta-G solvation = 39.407956 kcal Electronic energy + Delta-G solvation = -26481.679003 eV Core-core repulsion = 22722.927797 eV Total energy + Delta-G solvation = -3758.751206 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.30311 -40.29958 -38.24060 -37.37174 -35.54343 -33.72575 -32.25134 -31.56492 -29.68972 -28.82571 -27.92008 -26.25909 -25.81209 -24.32338 -23.40259 -22.34336 -20.56807 -20.20084 -18.68460 -18.07209 -17.75291 -16.88579 -16.49014 -15.94367 -15.72677 -15.45258 -15.11563 -14.84185 -14.54119 -14.22283 -13.85631 -13.70008 -13.42076 -13.26235 -13.16258 -13.01401 -12.92948 -12.60911 -12.50287 -12.18143 -11.84534 -11.75341 -11.07618 -10.91593 -10.74578 -10.42315 -10.21977 -10.07627 -9.88928 -9.77521 -9.71705 -9.66612 -9.12368 -8.59559 -8.49913 -8.22835 -6.84220 -5.71350 -3.04635 0.65638 1.07879 2.36002 2.89507 3.04403 3.41658 3.47518 3.49401 3.80737 3.86751 4.17488 4.34755 4.47538 4.54047 4.63584 4.76652 4.81532 4.92173 4.94669 5.15607 5.21231 5.30792 5.37226 5.49186 5.51515 5.57060 5.66088 5.72511 5.89638 6.02409 6.13319 6.22615 6.27572 6.40393 6.45026 6.48810 6.52193 6.65961 6.71026 7.55436 7.59059 7.82382 7.91304 8.06902 8.25205 8.50045 9.22365 9.81830 10.46568 11.40393 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.022273 B = 0.002936 C = 0.002855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.840424 B = 9535.335074 C = 9804.688377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.152 3.848 3 C -0.269 4.269 4 C 0.407 3.593 5 O -0.478 6.478 6 C -0.290 4.290 7 C 0.591 3.409 8 O -0.514 6.514 9 N -0.645 5.645 10 C 0.133 3.867 11 C -0.100 4.100 12 C 0.098 3.902 13 C -0.131 4.131 14 C 0.178 3.822 15 N -0.604 5.604 16 C -0.227 4.227 17 H 0.077 0.923 18 C -0.008 4.008 19 N -0.923 5.923 20 Si 0.912 3.088 21 H -0.289 1.289 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.161 3.839 25 C 0.160 3.840 26 N -0.580 5.580 27 H 0.420 0.580 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.151 0.849 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.047 0.953 39 H 0.044 0.956 40 H 0.252 0.748 41 H 0.023 0.977 42 H 0.042 0.958 43 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.845 -0.158 -9.415 26.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.046 3.954 3 C -0.293 4.293 4 C 0.292 3.708 5 O -0.359 6.359 6 C -0.301 4.301 7 C 0.381 3.619 8 O -0.389 6.389 9 N -0.382 5.382 10 C 0.011 3.989 11 C -0.102 4.102 12 C -0.025 4.025 13 C -0.170 4.170 14 C 0.053 3.947 15 N -0.331 5.331 16 C -0.355 4.355 17 H 0.095 0.905 18 C -0.204 4.204 19 N -0.570 5.570 20 Si 0.742 3.258 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.035 3.965 25 C 0.029 3.971 26 N -0.186 5.186 27 H 0.256 0.744 28 H 0.107 0.893 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.169 0.831 32 H 0.106 0.894 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.040 0.960 42 H 0.060 0.940 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -24.018 1.173 -9.409 25.821 hybrid contribution 0.298 -0.512 0.739 0.947 sum -23.720 0.661 -8.669 25.263 Atomic orbital electron populations 1.21093 0.87920 1.04912 1.04285 1.20289 0.94776 0.85604 0.94760 1.22262 0.96240 0.97335 1.13507 1.18188 0.88280 0.87920 0.76397 1.90830 1.69967 1.33235 1.41842 1.22528 0.94345 0.95069 1.18113 1.17146 0.85847 0.82051 0.76880 1.90856 1.65962 1.33126 1.48953 1.50130 1.10266 1.05453 1.72345 1.22919 0.83391 0.93298 0.99265 1.22454 0.93172 0.96086 0.98484 1.23207 0.98550 0.81293 0.99443 1.22682 0.99763 0.94151 1.00431 1.21211 0.92788 0.94458 0.86214 1.44542 1.18291 1.47184 1.23035 1.19053 0.99039 1.20042 0.97375 0.90472 1.24781 0.97964 0.99070 0.98562 1.69954 1.23304 1.29852 1.33934 0.86117 0.79944 0.77759 0.81963 1.21656 1.21666 1.20650 1.21043 0.89611 0.96674 0.89172 1.22883 0.82464 1.00949 0.90819 1.40749 1.05977 1.08891 1.63010 0.74372 0.89281 0.90441 0.88771 0.83094 0.89441 0.89877 0.89414 0.90019 0.91681 0.91785 0.93489 0.93748 0.93776 0.95972 0.93984 0.80431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.23 10.03 36.01 0.36 0.14 16 2 C 0.15 0.91 6.79 -82.13 -0.56 0.35 16 3 C -0.27 -2.77 9.57 -39.47 -0.38 -3.14 16 4 C 0.41 6.47 6.96 -34.68 -0.24 6.23 16 5 O -0.48 -10.14 16.43 -15.04 -0.25 -10.39 16 6 C -0.29 -4.12 6.05 -102.72 -0.62 -4.74 16 7 C 0.59 10.66 7.98 -12.58 -0.10 10.56 16 8 O -0.51 -12.02 16.33 -14.62 -0.24 -12.26 16 9 N -0.64 -9.81 3.61 -188.24 -0.68 -10.49 16 10 C 0.13 2.17 8.15 -3.60 -0.03 2.14 16 11 C -0.10 -1.56 0.99 -154.85 -0.15 -1.71 16 12 C 0.10 1.08 5.58 -3.60 -0.02 1.06 16 13 C -0.13 -2.10 6.36 -25.55 -0.16 -2.27 16 14 C 0.18 4.06 5.39 -2.86 -0.02 4.04 16 15 N -0.60 -14.96 3.41 -170.50 -0.58 -15.54 16 16 C -0.23 -6.30 10.28 -15.06 -0.15 -6.45 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.22 5.49 -17.43 -0.10 -0.31 16 19 N -0.92 -26.73 10.30 55.49 0.57 -26.16 16 20 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 C 0.16 3.20 6.63 -3.16 -0.02 3.18 16 25 C 0.16 1.29 10.32 -16.54 -0.17 1.12 16 26 N -0.58 -2.73 5.16 -9.00 -0.05 -2.77 16 27 H 0.42 0.17 8.70 -40.82 -0.35 -0.19 16 28 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 29 H 0.08 0.00 8.12 -51.93 -0.42 -0.42 16 30 H 0.09 0.16 8.05 -51.93 -0.42 -0.26 16 31 H 0.15 1.33 8.06 -52.48 -0.42 0.91 16 32 H 0.09 1.69 8.12 -51.93 -0.42 1.27 16 33 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 34 H 0.09 0.68 8.04 -51.93 -0.42 0.26 16 35 H 0.08 0.73 6.96 -51.92 -0.36 0.36 16 36 H 0.06 0.92 7.99 -51.93 -0.41 0.51 16 37 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.05 1.21 7.40 -51.93 -0.38 0.82 16 39 H 0.04 1.13 7.47 -51.93 -0.39 0.74 16 40 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 42 H 0.04 0.90 8.07 -51.93 -0.42 0.48 16 43 H 0.18 1.00 4.11 -52.48 -0.22 0.78 16 LS Contribution 352.36 15.07 5.31 5.31 Total: -1.00 -40.79 352.36 -9.17 -49.96 By element: Atomic # 1 Polarization: 0.80 SS G_CDS: -5.87 Total: -5.07 kcal Atomic # 6 Polarization: 12.55 SS G_CDS: -2.36 Total: 10.19 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.73 Total: -54.97 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.49 Total: -22.65 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -40.79 -9.17 -49.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073101607.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.367 kcal (2) G-P(sol) polarization free energy of solvation -40.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.959 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds