Wall clock time and date at job start Tue Mar 31 2020 12:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46800 * 2 1 4 4 C 1.52999 * 109.47249 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47673 * 180.02562 * 4 3 2 6 6 C 1.36933 * 119.99636 * 264.10987 * 5 4 3 7 7 H 1.07994 * 119.99723 * 135.92308 * 6 5 4 8 8 C 1.39003 * 119.99850 * 315.92743 * 6 5 4 9 9 N 1.31390 * 120.00256 * 347.26082 * 8 6 5 10 10 Si 1.86797 * 119.99932 * 167.26954 * 8 6 5 11 11 H 1.48503 * 109.47095 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47423 * 119.99602 * 10 8 6 13 13 H 1.48505 * 109.46872 * 239.99419 * 10 8 6 14 14 C 1.34776 * 120.00307 * 84.10231 * 5 4 3 15 15 O 1.21630 * 119.99680 * 5.70654 * 14 5 4 16 16 C 1.47351 * 119.99754 * 185.69968 * 14 5 4 17 17 C 1.39078 * 119.96634 * 312.34148 * 16 14 5 18 18 C 1.39438 * 119.61549 * 179.97438 * 17 16 14 19 19 C 1.46138 * 133.72637 * 179.97438 * 18 17 16 20 20 N 1.30168 * 107.73122 * 180.02562 * 19 18 17 21 21 N 1.39823 * 110.17007 * 359.97438 * 20 19 18 22 22 H 0.97000 * 125.40643 * 180.02562 * 21 20 19 23 23 C 1.36902 * 109.17558 * 0.02562 * 21 20 19 24 24 C 1.39291 * 133.45600 * 179.97438 * 23 21 20 25 25 C 1.37828 * 120.04666 * 180.02562 * 24 23 21 26 26 O 1.35717 * 119.81661 * 180.02562 * 25 24 23 27 27 C 1.42904 * 116.99844 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47524 * 59.99950 * 1 2 3 29 29 H 1.09008 * 109.47276 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47376 * 299.99960 * 1 2 3 31 31 H 1.08995 * 109.46920 * 240.00135 * 2 1 3 32 32 H 1.09000 * 109.47054 * 119.99929 * 2 1 3 33 33 H 1.08995 * 109.47274 * 60.00351 * 3 2 1 34 34 H 1.09000 * 109.47259 * 299.99803 * 3 2 1 35 35 H 1.09000 * 109.47381 * 59.99762 * 4 3 2 36 36 H 1.09004 * 109.47069 * 300.00047 * 4 3 2 37 37 H 0.96999 * 120.00320 * 180.02562 * 9 8 6 38 38 H 1.08001 * 120.19285 * 0.02562 * 17 16 14 39 39 H 1.08005 * 126.13354 * 359.97438 * 19 18 17 40 40 H 1.08005 * 119.97657 * 0.02792 * 24 23 21 41 41 H 1.08997 * 109.46972 * 179.97438 * 27 26 25 42 42 H 1.09002 * 109.47463 * 300.00270 * 27 26 25 43 43 H 1.09007 * 109.47144 * 60.00099 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.4007 3.4294 -1.1795 7 1 4.0871 4.4439 -1.3765 8 6 5.1518 2.7383 -2.1231 9 7 5.7435 1.6120 -1.7950 10 14 5.3200 3.4109 -3.8576 11 1 4.5633 4.6837 -3.9705 12 1 6.7535 3.6587 -4.1556 13 1 4.7764 2.4248 -4.8258 14 6 4.1703 3.4985 1.1613 15 8 3.9660 2.9300 2.2170 16 6 4.5405 4.9247 1.1520 17 6 5.6157 5.3583 0.3837 18 6 5.9594 6.7097 0.3799 19 6 6.9998 7.4855 -0.2919 20 7 6.8609 8.7291 0.0668 21 7 5.7832 8.8592 0.9482 22 1 5.4838 9.6891 1.3511 23 6 5.2180 7.6291 1.1520 24 6 4.1428 7.1837 1.9174 25 6 3.8044 5.8476 1.9205 26 8 2.7557 5.4189 2.6676 27 6 2.0511 6.4060 3.4236 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 0.9289 -0.8908 36 1 3.9336 0.9287 0.8891 37 1 6.2679 1.1299 -2.4534 38 1 6.1808 4.6525 -0.2071 39 1 7.7500 7.0966 -0.9645 40 1 3.5739 7.8859 2.5089 41 1 1.2386 5.9310 3.9733 42 1 2.7353 6.8828 4.1255 43 1 1.6418 7.1572 2.7481 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001154793708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:35 Heat of formation + Delta-G solvation = 9.244882 kcal Electronic energy + Delta-G solvation = -27145.686323 eV Core-core repulsion = 23385.627147 eV Total energy + Delta-G solvation = -3760.059175 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.97486 -39.26642 -38.23185 -35.50794 -35.03825 -33.89316 -32.06902 -31.42966 -29.70446 -29.03541 -28.07639 -26.95691 -24.93005 -23.57978 -22.31727 -21.81951 -21.24269 -20.36794 -19.20706 -18.12583 -17.50169 -16.92804 -15.93040 -15.53006 -15.31204 -14.80437 -14.69837 -14.49694 -14.39670 -14.05594 -13.84411 -13.79605 -13.41692 -13.02619 -12.62313 -12.41414 -12.16896 -12.04044 -11.70569 -11.48981 -11.42810 -11.18662 -11.03658 -10.96731 -10.57181 -10.50180 -10.44659 -10.39782 -10.28146 -10.16921 -9.93639 -9.67261 -9.04986 -8.44839 -7.79650 -7.60756 -7.36317 -6.33967 -4.11162 1.35035 1.73446 2.76355 2.89288 3.11011 3.22267 3.26077 3.57576 3.81723 4.10754 4.33485 4.76516 4.90503 4.94071 5.00685 5.13015 5.20852 5.28197 5.42375 5.52591 5.55389 5.61574 5.70517 5.76691 5.99364 6.11708 6.14223 6.20317 6.27996 6.38136 6.45393 6.54917 6.66240 6.72263 6.78409 6.82157 6.89746 7.13928 7.19682 7.40100 7.41765 7.51484 7.73495 7.82096 8.05245 8.42422 9.08867 9.56059 10.00332 10.67851 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.005851 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.238963 B = 4784.193977 C = 6842.854619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.130 4.130 4 C 0.124 3.876 5 N -0.436 5.436 6 C -0.336 4.336 7 H 0.087 0.913 8 C 0.046 3.954 9 N -0.862 5.862 10 Si 0.907 3.093 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.280 1.280 14 C 0.529 3.471 15 O -0.587 6.587 16 C -0.156 4.156 17 C 0.060 3.940 18 C -0.225 4.225 19 C 0.097 3.903 20 N -0.273 5.273 21 N -0.519 5.519 22 H 0.434 0.566 23 C 0.173 3.827 24 C -0.270 4.270 25 C 0.217 3.783 26 O -0.288 6.288 27 C 0.025 3.975 28 H 0.050 0.950 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.269 0.731 38 H 0.159 0.841 39 H 0.196 0.804 40 H 0.127 0.873 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.900 7.866 3.013 9.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.168 4.168 4 C 0.000 4.000 5 N -0.154 5.154 6 C -0.464 4.464 7 H 0.104 0.896 8 C -0.160 4.160 9 N -0.498 5.498 10 Si 0.734 3.266 11 H -0.191 1.191 12 H -0.205 1.205 13 H -0.206 1.206 14 C 0.318 3.682 15 O -0.472 6.472 16 C -0.161 4.161 17 C 0.039 3.961 18 C -0.233 4.233 19 C -0.101 4.101 20 N -0.086 5.086 21 N -0.234 5.234 22 H 0.277 0.723 23 C 0.056 3.944 24 C -0.294 4.294 25 C 0.167 3.833 26 O -0.199 6.199 27 C -0.070 4.070 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.176 0.824 39 H 0.213 0.787 40 H 0.145 0.855 41 H 0.116 0.884 42 H 0.072 0.928 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.511 8.392 3.323 9.685 hybrid contribution -0.451 0.345 -0.657 0.868 sum -3.962 8.737 2.666 9.957 Atomic orbital electron populations 1.21758 0.96737 1.00600 1.01444 1.21423 0.94890 0.97804 1.01578 1.21940 0.98100 0.95423 1.01362 1.21299 0.90722 0.84851 1.03090 1.43229 1.55684 1.11766 1.04721 1.19416 1.32620 1.00356 0.94052 0.89588 1.25428 0.94442 0.96252 0.99896 1.69889 1.29323 1.15935 1.34660 0.86167 0.78306 0.79361 0.82799 1.19095 1.20451 1.20575 1.17932 0.80267 0.85762 0.84288 1.90635 1.55498 1.69716 1.31324 1.19131 0.99578 0.94740 1.02665 1.21017 0.92313 0.92648 0.90139 1.19827 1.01688 0.94764 1.07022 1.25113 0.97541 0.89285 0.98152 1.76455 1.04389 1.20156 1.07587 1.45780 1.27424 1.07364 1.42836 0.72289 1.18436 0.94065 0.86205 0.95654 1.19586 1.03616 0.94876 1.11338 1.18671 0.85865 0.90574 0.88216 1.86300 1.40994 1.35610 1.56961 1.23062 0.96365 0.92590 0.95012 0.93099 0.93485 0.93098 0.92292 0.92389 0.92808 0.92440 0.88307 0.92916 0.92067 0.82380 0.78685 0.85514 0.88418 0.92826 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.91 37.16 0.37 -1.73 16 2 C -0.12 -2.00 5.93 -26.73 -0.16 -2.16 16 3 C -0.13 -2.64 5.49 -26.73 -0.15 -2.79 16 4 C 0.12 2.92 4.89 -4.04 -0.02 2.90 16 5 N -0.44 -10.84 2.49 -116.06 -0.29 -11.13 16 6 C -0.34 -8.17 6.53 -14.99 -0.10 -8.26 16 7 H 0.09 2.08 6.93 -52.49 -0.36 1.72 16 8 C 0.05 1.10 5.06 -17.46 -0.09 1.01 16 9 N -0.86 -21.77 11.50 55.50 0.64 -21.13 16 10 Si 0.91 18.73 29.57 -169.99 -5.03 13.70 16 11 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 12 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 13 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 14 C 0.53 13.26 6.89 -12.55 -0.09 13.18 16 15 O -0.59 -16.09 16.09 -6.04 -0.10 -16.19 16 16 C -0.16 -3.41 5.15 -104.89 -0.54 -3.95 16 17 C 0.06 1.19 8.02 -38.82 -0.31 0.88 16 18 C -0.23 -3.96 6.34 -105.20 -0.67 -4.63 16 19 C 0.10 1.47 12.29 -15.09 -0.19 1.28 16 20 N -0.27 -4.13 12.54 31.91 0.40 -3.73 16 21 N -0.52 -7.30 7.36 32.39 0.24 -7.06 16 22 H 0.43 4.56 8.96 -182.81 -1.64 2.92 16 23 C 0.17 2.82 7.32 -84.13 -0.62 2.20 16 24 C -0.27 -4.33 9.04 -39.34 -0.36 -4.69 16 25 C 0.22 4.18 6.67 -38.74 -0.26 3.92 16 26 O -0.29 -5.42 9.46 -30.15 -0.29 -5.71 16 27 C 0.03 0.31 9.80 101.05 0.99 1.30 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 30 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.10 2.44 5.80 -51.93 -0.30 2.14 16 36 H 0.05 1.31 7.53 -51.93 -0.39 0.92 16 37 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 38 H 0.16 3.28 6.75 -52.49 -0.35 2.93 16 39 H 0.20 2.26 8.06 -52.48 -0.42 1.84 16 40 H 0.13 1.60 6.23 -52.48 -0.33 1.27 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.05 0.58 7.64 -51.93 -0.40 0.18 16 43 H 0.05 0.56 7.64 -51.92 -0.40 0.16 16 LS Contribution 358.64 15.07 5.40 5.40 Total: -1.00 -30.81 358.64 -8.30 -39.10 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -7.11 Total: 8.25 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: -2.17 Total: -1.52 kcal Atomic # 7 Polarization: -44.03 SS G_CDS: 0.99 Total: -43.05 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.38 Total: -21.90 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.81 -8.30 -39.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154793708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.349 kcal (2) G-P(sol) polarization free energy of solvation -30.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds