Wall clock time and date at job start Tue Mar 31 2020 12:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.46800 * 2 1 4 4 C 1.52999 * 109.47249 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47673 * 180.02562 * 4 3 2 6 6 C 1.36933 * 119.99636 * 264.10987 * 5 4 3 7 7 H 1.07994 * 119.99723 * 135.92308 * 6 5 4 8 8 C 1.39003 * 119.99850 * 315.92743 * 6 5 4 9 9 N 1.31390 * 120.00256 * 347.26082 * 8 6 5 10 10 Si 1.86797 * 119.99932 * 167.26954 * 8 6 5 11 11 H 1.48503 * 109.47095 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47423 * 119.99602 * 10 8 6 13 13 H 1.48505 * 109.46872 * 239.99419 * 10 8 6 14 14 C 1.34776 * 120.00307 * 84.10231 * 5 4 3 15 15 O 1.21630 * 119.99680 * 5.70654 * 14 5 4 16 16 C 1.47351 * 119.99754 * 185.69968 * 14 5 4 17 17 C 1.39078 * 119.96634 * 312.34148 * 16 14 5 18 18 C 1.39438 * 119.61549 * 179.97438 * 17 16 14 19 19 C 1.46138 * 133.72637 * 179.97438 * 18 17 16 20 20 N 1.30168 * 107.73122 * 180.02562 * 19 18 17 21 21 N 1.39823 * 110.17007 * 359.97438 * 20 19 18 22 22 H 0.97000 * 125.40643 * 180.02562 * 21 20 19 23 23 C 1.36902 * 109.17558 * 0.02562 * 21 20 19 24 24 C 1.39291 * 133.45600 * 179.97438 * 23 21 20 25 25 C 1.37828 * 120.04666 * 180.02562 * 24 23 21 26 26 O 1.35717 * 119.81661 * 180.02562 * 25 24 23 27 27 C 1.42904 * 116.99844 * 359.97438 * 26 25 24 28 28 H 1.09004 * 109.47524 * 59.99950 * 1 2 3 29 29 H 1.09008 * 109.47276 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47376 * 299.99960 * 1 2 3 31 31 H 1.08995 * 109.46920 * 240.00135 * 2 1 3 32 32 H 1.09000 * 109.47054 * 119.99929 * 2 1 3 33 33 H 1.08995 * 109.47274 * 60.00351 * 3 2 1 34 34 H 1.09000 * 109.47259 * 299.99803 * 3 2 1 35 35 H 1.09000 * 109.47381 * 59.99762 * 4 3 2 36 36 H 1.09004 * 109.47069 * 300.00047 * 4 3 2 37 37 H 0.96999 * 120.00320 * 180.02562 * 9 8 6 38 38 H 1.08001 * 120.19285 * 0.02562 * 17 16 14 39 39 H 1.08005 * 126.13354 * 359.97438 * 19 18 17 40 40 H 1.08005 * 119.97657 * 0.02792 * 24 23 21 41 41 H 1.08997 * 109.46972 * 179.97438 * 27 26 25 42 42 H 1.09002 * 109.47463 * 300.00270 * 27 26 25 43 43 H 1.09007 * 109.47144 * 60.00099 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8238 0.0000 6 6 4.4007 3.4294 -1.1795 7 1 4.0871 4.4439 -1.3765 8 6 5.1518 2.7383 -2.1231 9 7 5.7435 1.6120 -1.7950 10 14 5.3200 3.4109 -3.8576 11 1 4.5633 4.6837 -3.9705 12 1 6.7535 3.6587 -4.1556 13 1 4.7764 2.4248 -4.8258 14 6 4.1703 3.4985 1.1613 15 8 3.9660 2.9300 2.2170 16 6 4.5405 4.9247 1.1520 17 6 5.6157 5.3583 0.3837 18 6 5.9594 6.7097 0.3799 19 6 6.9998 7.4855 -0.2919 20 7 6.8609 8.7291 0.0668 21 7 5.7832 8.8592 0.9482 22 1 5.4838 9.6891 1.3511 23 6 5.2180 7.6291 1.1520 24 6 4.1428 7.1837 1.9174 25 6 3.8044 5.8476 1.9205 26 8 2.7557 5.4189 2.6676 27 6 2.0511 6.4060 3.4236 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9563 -0.8900 35 1 3.9329 0.9289 -0.8908 36 1 3.9336 0.9287 0.8891 37 1 6.2679 1.1299 -2.4534 38 1 6.1808 4.6525 -0.2071 39 1 7.7500 7.0966 -0.9645 40 1 3.5739 7.8859 2.5089 41 1 1.2386 5.9310 3.9733 42 1 2.7353 6.8828 4.1255 43 1 1.6418 7.1572 2.7481 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001154793708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:35 Heat of formation + Delta-G solvation = -9.071676 kcal Electronic energy + Delta-G solvation = -27146.480588 eV Core-core repulsion = 23385.627147 eV Total energy + Delta-G solvation = -3760.853441 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.28310 -40.74925 -39.87739 -37.07697 -36.71734 -35.50040 -33.43412 -33.23190 -31.12023 -30.34475 -29.57052 -28.08130 -26.81332 -25.12852 -23.74533 -23.13659 -22.53170 -21.92086 -21.02888 -19.53081 -19.06763 -18.23500 -17.73362 -16.85563 -16.68091 -16.52162 -16.30747 -16.00160 -15.63400 -15.53361 -15.40106 -15.16812 -14.78589 -14.52431 -14.14056 -13.91372 -13.72630 -13.56979 -13.05759 -12.94382 -12.89477 -12.79697 -12.60514 -12.39230 -12.08724 -12.00710 -11.94195 -11.79292 -11.75706 -11.58367 -11.39730 -11.24829 -10.93143 -10.35831 -9.33150 -9.10190 -8.98576 -8.21058 -6.04550 -0.00465 0.28936 1.45895 1.52204 1.52869 1.63737 1.74212 2.11874 2.36403 2.39837 2.75403 3.01369 3.21176 3.65993 3.74670 3.81069 4.04843 4.11331 4.20094 4.29868 4.34505 4.35680 4.40399 4.53727 4.64660 4.69147 4.79362 4.85955 4.87167 4.91027 5.02826 5.03073 5.16888 5.19848 5.28148 5.39092 5.44354 5.47384 5.51396 5.60472 5.70404 6.15042 6.28226 6.49046 6.53427 6.64218 7.18441 7.64584 8.10155 8.82297 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.010583 B = 0.005851 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.238963 B = 4784.193977 C = 6842.854619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.115 4.115 4 C 0.126 3.874 5 N -0.446 5.446 6 C -0.341 4.341 7 H 0.085 0.915 8 C 0.011 3.989 9 N -0.894 5.894 10 Si 0.973 3.027 11 H -0.262 1.262 12 H -0.271 1.271 13 H -0.281 1.281 14 C 0.518 3.482 15 O -0.626 6.626 16 C -0.194 4.194 17 C 0.058 3.942 18 C -0.241 4.241 19 C 0.101 3.899 20 N -0.273 5.273 21 N -0.503 5.503 22 H 0.451 0.549 23 C 0.175 3.825 24 C -0.251 4.251 25 C 0.204 3.796 26 O -0.324 6.324 27 C 0.014 3.986 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.035 0.965 34 H 0.054 0.946 35 H 0.087 0.913 36 H 0.028 0.972 37 H 0.272 0.728 38 H 0.139 0.861 39 H 0.226 0.774 40 H 0.167 0.833 41 H 0.113 0.887 42 H 0.072 0.928 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 10.335 2.245 11.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.154 4.154 4 C 0.003 3.997 5 N -0.163 5.163 6 C -0.469 4.469 7 H 0.103 0.897 8 C -0.192 4.192 9 N -0.531 5.531 10 Si 0.796 3.204 11 H -0.186 1.186 12 H -0.196 1.196 13 H -0.206 1.206 14 C 0.308 3.692 15 O -0.513 6.513 16 C -0.199 4.199 17 C 0.037 3.963 18 C -0.248 4.248 19 C -0.098 4.098 20 N -0.086 5.086 21 N -0.220 5.220 22 H 0.299 0.701 23 C 0.057 3.943 24 C -0.274 4.274 25 C 0.154 3.846 26 O -0.236 6.236 27 C -0.080 4.080 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.069 0.931 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.046 0.954 37 H 0.082 0.918 38 H 0.157 0.843 39 H 0.242 0.758 40 H 0.184 0.816 41 H 0.131 0.869 42 H 0.091 0.909 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.069 10.906 2.557 11.917 hybrid contribution -0.251 -0.350 -0.340 0.549 sum -4.320 10.555 2.217 11.618 Atomic orbital electron populations 1.21709 0.94158 1.02342 1.01723 1.21403 0.97105 0.95032 1.01755 1.21790 0.95586 0.97836 1.00188 1.21256 0.92863 0.84516 1.01109 1.43488 1.55609 1.12027 1.05165 1.19511 1.32990 1.00452 0.93956 0.89732 1.26141 0.93662 0.96254 1.03120 1.69994 1.30022 1.17153 1.35947 0.85175 0.78526 0.78688 0.77963 1.18586 1.19594 1.20633 1.18538 0.79594 0.87370 0.83700 1.90571 1.57363 1.70980 1.32436 1.19052 1.01828 0.93386 1.05643 1.20731 0.91911 0.93586 0.90056 1.19988 1.02935 0.94014 1.07906 1.25584 0.97390 0.88664 0.98121 1.76465 1.04524 1.20038 1.07586 1.45801 1.26631 1.07380 1.42139 0.70141 1.18534 0.93812 0.86857 0.95070 1.19809 1.03097 0.94008 1.10484 1.18695 0.86259 0.91272 0.88382 1.86251 1.41208 1.38579 1.57517 1.23445 0.96781 0.92404 0.95373 0.92558 0.91004 0.93110 0.91815 0.92540 0.94571 0.92725 0.89473 0.95374 0.91826 0.84340 0.75794 0.81599 0.86881 0.90935 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.85 9.91 71.98 0.71 -3.14 16 2 C -0.11 -3.90 5.93 30.59 0.18 -3.72 16 3 C -0.12 -4.90 5.49 30.59 0.17 -4.73 16 4 C 0.13 6.31 4.89 86.38 0.42 6.73 16 5 N -0.45 -23.37 2.49 -639.34 -1.59 -24.96 16 6 C -0.34 -17.15 6.53 84.08 0.55 -16.60 16 7 H 0.09 4.22 6.93 -2.91 -0.02 4.20 16 8 C 0.01 0.56 5.06 84.94 0.43 0.99 16 9 N -0.89 -46.50 11.50 21.67 0.25 -46.25 16 10 Si 0.97 38.40 29.57 68.60 2.03 40.43 16 11 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 12 H -0.27 -10.30 7.11 99.48 0.71 -9.59 16 13 H -0.28 -11.07 7.11 99.48 0.71 -10.37 16 14 C 0.52 27.51 6.89 86.64 0.60 28.10 16 15 O -0.63 -36.55 16.09 6.67 0.11 -36.44 16 16 C -0.19 -8.80 5.15 -20.04 -0.10 -8.90 16 17 C 0.06 2.39 8.02 22.76 0.18 2.57 16 18 C -0.24 -8.19 6.34 -20.24 -0.13 -8.32 16 19 C 0.10 2.79 12.29 86.99 1.07 3.86 16 20 N -0.27 -7.43 12.54 -52.97 -0.66 -8.09 16 21 N -0.50 -12.42 7.36 -51.43 -0.38 -12.80 16 22 H 0.45 7.67 8.96 -213.50 -1.91 5.76 16 23 C 0.18 5.30 7.32 39.31 0.29 5.59 16 24 C -0.25 -7.46 9.04 22.43 0.20 -7.26 16 25 C 0.20 7.88 6.67 22.82 0.15 8.03 16 26 O -0.32 -12.27 9.46 -79.59 -0.75 -13.03 16 27 C 0.01 0.32 9.80 113.37 1.11 1.43 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.04 1.63 8.14 -2.39 -0.02 1.62 16 34 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.09 4.54 5.80 -2.39 -0.01 4.52 16 36 H 0.03 1.50 7.53 -2.39 -0.02 1.48 16 37 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 38 H 0.14 6.05 6.75 -2.91 -0.02 6.04 16 39 H 0.23 4.60 8.06 -2.91 -0.02 4.58 16 40 H 0.17 3.50 6.23 -2.91 -0.02 3.49 16 41 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 42 H 0.07 1.36 7.64 -2.39 -0.02 1.35 16 43 H 0.07 1.36 7.64 -2.38 -0.02 1.34 16 Total: -1.00 -70.12 358.64 3.97 -66.16 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -0.87 Total: 30.36 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 5.83 Total: 4.63 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -2.38 Total: -92.10 kcal Atomic # 8 Polarization: -48.83 SS G_CDS: -0.65 Total: -49.47 kcal Atomic # 14 Polarization: 38.40 SS G_CDS: 2.03 Total: 40.43 kcal Total: -70.12 3.97 -66.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001154793708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.086 kcal (2) G-P(sol) polarization free energy of solvation -70.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds