Wall clock time and date at job start Tue Mar 31 2020 11:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46753 * 2 1 4 4 N 1.46504 * 109.47028 * 179.97438 * 3 2 1 5 5 C 1.37095 * 120.00725 * 265.56644 * 4 3 2 6 6 H 1.07998 * 120.00066 * 145.67045 * 5 4 3 7 7 C 1.38949 * 119.99800 * 325.68098 * 5 4 3 8 8 N 1.31417 * 120.00057 * 338.39762 * 7 5 4 9 9 Si 1.86803 * 120.00090 * 158.40184 * 7 5 4 10 10 H 1.48495 * 109.47094 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47019 * 119.99948 * 9 7 5 12 12 H 1.48501 * 109.47112 * 239.99490 * 9 7 5 13 13 C 1.34779 * 119.99262 * 85.57147 * 4 3 2 14 14 O 1.21291 * 120.00669 * 0.02562 * 13 4 3 15 15 C 1.50704 * 119.99498 * 179.97438 * 13 4 3 16 16 N 1.46501 * 109.46979 * 179.97438 * 15 13 4 17 17 C 1.39289 * 125.82077 * 89.99837 * 16 15 13 18 18 C 1.38661 * 133.33228 * 0.02903 * 17 16 15 19 19 C 1.38107 * 119.84712 * 179.97438 * 18 17 16 20 20 C 1.38440 * 120.28452 * 0.02562 * 19 18 17 21 21 C 1.38110 * 120.28238 * 359.73272 * 20 19 18 22 22 C 1.38661 * 119.84852 * 0.48961 * 21 20 19 23 23 N 1.39281 * 133.33217 * 179.84764 * 22 21 20 24 24 C 1.46509 * 125.81830 * 359.68191 * 23 22 21 25 25 C 1.34632 * 108.36710 * 179.71562 * 23 22 21 26 26 O 1.21689 * 125.16578 * 179.97438 * 25 23 22 27 27 H 1.08997 * 109.46369 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46610 * 299.99476 * 1 2 3 29 29 H 1.08994 * 109.47306 * 59.99942 * 1 2 3 30 30 H 1.09002 * 109.47236 * 240.00475 * 2 1 3 31 31 H 1.08994 * 109.47306 * 120.00058 * 2 1 3 32 32 H 1.09002 * 109.46862 * 60.00245 * 3 2 1 33 33 H 1.08998 * 109.47722 * 300.00154 * 3 2 1 34 34 H 0.97004 * 119.99922 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.47071 * 59.99981 * 15 13 4 36 36 H 1.08999 * 109.47496 * 299.99895 * 15 13 4 37 37 H 1.07995 * 120.07774 * 359.94753 * 18 17 16 38 38 H 1.07999 * 119.85467 * 180.02562 * 19 18 17 39 39 H 1.08004 * 119.85612 * 179.97438 * 20 19 18 40 40 H 1.07997 * 120.07445 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47158 * 89.99846 * 24 23 22 42 42 H 1.08996 * 109.46842 * 209.99947 * 24 23 22 43 43 H 1.09000 * 109.46908 * 330.00022 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1901 1.5346 1.1845 6 1 5.1290 1.0151 1.3069 7 6 3.6764 2.2961 2.2271 8 7 2.8017 3.2449 1.9788 9 14 4.2293 1.9712 3.9816 10 1 5.2123 0.8582 3.9928 11 1 4.8607 3.1955 4.5363 12 1 3.0540 1.6015 4.8106 13 6 4.1792 1.3523 -1.1629 14 8 3.5732 1.2715 -2.2105 15 6 5.6863 1.3530 -1.1624 16 7 6.1751 1.2454 -2.5392 17 6 6.4466 2.3115 -3.3935 18 6 6.3595 3.6884 -3.2544 19 6 6.7088 4.5092 -4.3087 20 6 7.1451 3.9633 -5.5037 21 6 7.2399 2.5932 -5.6500 22 6 6.8870 1.7609 -4.5987 23 7 6.8693 0.3773 -4.4394 24 6 7.2538 -0.6075 -5.4537 25 6 6.4380 0.0991 -3.1947 26 8 6.3056 -1.0188 -2.7324 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 2.4433 3.7767 2.7067 35 1 6.0497 0.5057 -0.5809 36 1 6.0491 2.2803 -0.7191 37 1 6.0187 4.1179 -2.3239 38 1 6.6414 5.5817 -4.2003 39 1 7.4161 4.6117 -6.3238 40 1 7.5811 2.1710 -6.5836 41 1 8.3182 -0.8248 -5.3641 42 1 6.6822 -1.5236 -5.3056 43 1 7.0471 -0.2066 -6.4460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000056484946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:21 Heat of formation + Delta-G solvation = 0.161480 kcal Electronic energy + Delta-G solvation = -27173.019931 eV Core-core repulsion = 23412.566870 eV Total energy + Delta-G solvation = -3760.453061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.19019 -38.66195 -38.03832 -35.62687 -35.58210 -34.71975 -32.85703 -31.43557 -30.33335 -29.94954 -28.11343 -26.58265 -25.53448 -24.21536 -22.29177 -22.21142 -21.08138 -20.21061 -19.18029 -17.72844 -17.54092 -16.97935 -16.26374 -15.77271 -15.74222 -14.96022 -14.70294 -14.35774 -14.16739 -13.97439 -13.94249 -13.85154 -13.61585 -13.38331 -12.75261 -12.65064 -12.59067 -12.43235 -12.05816 -11.69508 -11.59393 -11.38080 -11.13535 -11.02094 -10.97969 -10.71216 -10.51583 -10.33476 -10.31470 -10.27545 -10.15233 -9.76430 -9.17860 -8.63310 -8.12882 -7.62156 -7.48249 -6.47483 -4.16408 1.37366 1.55111 2.38411 3.04393 3.17284 3.20934 3.25841 3.47081 3.77662 3.88607 4.03404 4.62311 4.73548 4.83368 4.90724 5.04633 5.23882 5.29920 5.37859 5.45701 5.56400 5.59466 5.78743 5.80725 5.84776 5.90318 5.95910 5.99044 6.19951 6.24497 6.48351 6.50898 6.55739 6.60369 6.68179 6.71610 6.80767 6.83677 7.02134 7.10430 7.28150 7.44312 7.60690 7.82196 8.27143 8.51989 8.96903 9.39946 9.83850 10.52572 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.004260 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.857747 B = 6570.942401 C = 7087.497549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.116 3.884 4 N -0.432 5.432 5 C -0.348 4.348 6 H 0.091 0.909 7 C 0.048 3.952 8 N -0.853 5.853 9 Si 0.913 3.087 10 H -0.266 1.266 11 H -0.280 1.280 12 H -0.278 1.278 13 C 0.452 3.548 14 O -0.593 6.593 15 C 0.128 3.872 16 N -0.515 5.515 17 C 0.114 3.886 18 C -0.100 4.100 19 C -0.112 4.112 20 C -0.120 4.120 21 C -0.110 4.110 22 C 0.085 3.915 23 N -0.546 5.546 24 C 0.105 3.895 25 C 0.685 3.315 26 O -0.556 6.556 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.109 0.891 33 H 0.051 0.949 34 H 0.271 0.729 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.131 0.869 38 H 0.129 0.871 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.648 1.367 -10.011 12.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.150 5.150 5 C -0.476 4.476 6 H 0.109 0.891 7 C -0.159 4.159 8 N -0.489 5.489 9 Si 0.739 3.261 10 H -0.190 1.190 11 H -0.206 1.206 12 H -0.204 1.204 13 C 0.239 3.761 14 O -0.478 6.478 15 C 0.004 3.996 16 N -0.234 5.234 17 C 0.011 3.989 18 C -0.121 4.121 19 C -0.132 4.132 20 C -0.140 4.140 21 C -0.131 4.131 22 C -0.016 4.016 23 N -0.268 5.268 24 C -0.037 4.037 25 C 0.389 3.611 26 O -0.432 6.432 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.127 0.873 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.149 0.851 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.083 0.917 42 H 0.103 0.897 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.106 0.528 -9.994 12.274 hybrid contribution 0.090 -0.159 1.050 1.066 sum 7.196 0.369 -8.943 11.485 Atomic orbital electron populations 1.21645 0.96538 1.00460 1.01332 1.21834 0.94745 0.99413 1.01386 1.21476 0.81013 0.94626 1.03630 1.43439 1.04946 1.62189 1.04421 1.19504 1.07947 1.29917 0.90223 0.89132 1.25327 0.96780 0.93377 1.00452 1.69937 1.29604 1.16340 1.33010 0.86099 0.78948 0.78683 0.82370 1.19021 1.20592 1.20371 1.20478 0.88984 0.82224 0.84413 1.90565 1.69680 1.55916 1.31656 1.21318 0.94834 1.05558 0.77863 1.44806 1.60355 1.04469 1.13752 1.18081 1.01412 0.90331 0.89064 1.20178 1.02075 0.89128 1.00741 1.20805 1.00293 0.99523 0.92593 1.20746 1.01755 0.93560 0.97954 1.19931 1.03953 0.92584 0.96641 1.18061 1.04838 0.82941 0.95768 1.44941 1.63311 1.04928 1.13637 1.21639 1.00833 0.91615 0.89583 1.15872 0.80103 0.84494 0.80667 1.90993 1.60772 1.20835 1.70634 0.93615 0.92976 0.93189 0.92934 0.92322 0.87328 0.93034 0.91884 0.87301 0.86812 0.85084 0.85273 0.85446 0.85785 0.91653 0.89708 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 9.91 37.16 0.37 -2.13 16 2 C -0.14 -2.90 6.23 -26.73 -0.17 -3.07 16 3 C 0.12 2.81 4.92 -4.04 -0.02 2.79 16 4 N -0.43 -10.85 2.55 -114.81 -0.29 -11.14 16 5 C -0.35 -8.55 8.70 -14.93 -0.13 -8.68 16 6 H 0.09 2.12 6.98 -52.49 -0.37 1.75 16 7 C 0.05 1.15 4.94 -17.47 -0.09 1.06 16 8 N -0.85 -21.58 11.31 55.50 0.63 -20.96 16 9 Si 0.91 18.75 29.60 -169.99 -5.03 13.72 16 10 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 11 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 12 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 13 C 0.45 11.27 7.68 -10.98 -0.08 11.19 16 14 O -0.59 -16.38 16.08 5.55 0.09 -16.29 16 15 C 0.13 2.71 5.12 -5.19 -0.03 2.68 16 16 N -0.52 -10.51 2.27 -120.19 -0.27 -10.78 16 17 C 0.11 2.03 6.83 -83.80 -0.57 1.45 16 18 C -0.10 -1.54 10.02 -39.47 -0.40 -1.94 16 19 C -0.11 -1.36 10.03 -39.56 -0.40 -1.76 16 20 C -0.12 -1.31 10.03 -39.55 -0.40 -1.71 16 21 C -0.11 -1.32 10.02 -39.47 -0.40 -1.72 16 22 C 0.09 1.35 6.83 -83.80 -0.57 0.77 16 23 N -0.55 -9.11 3.18 -126.32 -0.40 -9.52 16 24 C 0.10 1.22 11.01 59.85 0.66 1.88 16 25 C 0.69 14.31 8.45 -87.17 -0.74 13.58 16 26 O -0.56 -13.14 17.48 5.20 0.09 -13.05 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.11 2.73 5.34 -51.93 -0.28 2.46 16 33 H 0.05 1.30 7.56 -51.93 -0.39 0.91 16 34 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 35 H 0.11 2.25 7.53 -51.93 -0.39 1.86 16 36 H 0.11 2.17 8.10 -51.93 -0.42 1.75 16 37 H 0.13 2.01 8.06 -52.49 -0.42 1.58 16 38 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 39 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 40 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 1.04 8.03 -51.93 -0.42 0.62 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 365.59 15.07 5.51 5.51 Total: -1.00 -32.73 365.59 -8.69 -41.41 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -6.05 Total: 6.69 kcal Atomic # 6 Polarization: 17.34 SS G_CDS: -2.95 Total: 14.39 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: -0.34 Total: -52.39 kcal Atomic # 8 Polarization: -29.51 SS G_CDS: 0.18 Total: -29.33 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.72 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -32.73 -8.69 -41.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.573 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds