Wall clock time and date at job start Tue Mar 31 2020 11:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.46753 * 2 1 4 4 N 1.46504 * 109.47028 * 179.97438 * 3 2 1 5 5 C 1.37095 * 120.00725 * 265.56644 * 4 3 2 6 6 H 1.07998 * 120.00066 * 145.67045 * 5 4 3 7 7 C 1.38949 * 119.99800 * 325.68098 * 5 4 3 8 8 N 1.31417 * 120.00057 * 338.39762 * 7 5 4 9 9 Si 1.86803 * 120.00090 * 158.40184 * 7 5 4 10 10 H 1.48495 * 109.47094 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47019 * 119.99948 * 9 7 5 12 12 H 1.48501 * 109.47112 * 239.99490 * 9 7 5 13 13 C 1.34779 * 119.99262 * 85.57147 * 4 3 2 14 14 O 1.21291 * 120.00669 * 0.02562 * 13 4 3 15 15 C 1.50704 * 119.99498 * 179.97438 * 13 4 3 16 16 N 1.46501 * 109.46979 * 179.97438 * 15 13 4 17 17 C 1.39289 * 125.82077 * 89.99837 * 16 15 13 18 18 C 1.38661 * 133.33228 * 0.02903 * 17 16 15 19 19 C 1.38107 * 119.84712 * 179.97438 * 18 17 16 20 20 C 1.38440 * 120.28452 * 0.02562 * 19 18 17 21 21 C 1.38110 * 120.28238 * 359.73272 * 20 19 18 22 22 C 1.38661 * 119.84852 * 0.48961 * 21 20 19 23 23 N 1.39281 * 133.33217 * 179.84764 * 22 21 20 24 24 C 1.46509 * 125.81830 * 359.68191 * 23 22 21 25 25 C 1.34632 * 108.36710 * 179.71562 * 23 22 21 26 26 O 1.21689 * 125.16578 * 179.97438 * 25 23 22 27 27 H 1.08997 * 109.46369 * 179.97438 * 1 2 3 28 28 H 1.08994 * 109.46610 * 299.99476 * 1 2 3 29 29 H 1.08994 * 109.47306 * 59.99942 * 1 2 3 30 30 H 1.09002 * 109.47236 * 240.00475 * 2 1 3 31 31 H 1.08994 * 109.47306 * 120.00058 * 2 1 3 32 32 H 1.09002 * 109.46862 * 60.00245 * 3 2 1 33 33 H 1.08998 * 109.47722 * 300.00154 * 3 2 1 34 34 H 0.97004 * 119.99922 * 180.02562 * 8 7 5 35 35 H 1.08995 * 109.47071 * 59.99981 * 15 13 4 36 36 H 1.08999 * 109.47496 * 299.99895 * 15 13 4 37 37 H 1.07995 * 120.07774 * 359.94753 * 18 17 16 38 38 H 1.07999 * 119.85467 * 180.02562 * 19 18 17 39 39 H 1.08004 * 119.85612 * 179.97438 * 20 19 18 40 40 H 1.07997 * 120.07445 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47158 * 89.99846 * 24 23 22 42 42 H 1.08996 * 109.46842 * 209.99947 * 24 23 22 43 43 H 1.09000 * 109.46908 * 330.00022 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1901 1.5346 1.1845 6 1 5.1290 1.0151 1.3069 7 6 3.6764 2.2961 2.2271 8 7 2.8017 3.2449 1.9788 9 14 4.2293 1.9712 3.9816 10 1 5.2123 0.8582 3.9928 11 1 4.8607 3.1955 4.5363 12 1 3.0540 1.6015 4.8106 13 6 4.1792 1.3523 -1.1629 14 8 3.5732 1.2715 -2.2105 15 6 5.6863 1.3530 -1.1624 16 7 6.1751 1.2454 -2.5392 17 6 6.4466 2.3115 -3.3935 18 6 6.3595 3.6884 -3.2544 19 6 6.7088 4.5092 -4.3087 20 6 7.1451 3.9633 -5.5037 21 6 7.2399 2.5932 -5.6500 22 6 6.8870 1.7609 -4.5987 23 7 6.8693 0.3773 -4.4394 24 6 7.2538 -0.6075 -5.4537 25 6 6.4380 0.0991 -3.1947 26 8 6.3056 -1.0188 -2.7324 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 2.4433 3.7767 2.7067 35 1 6.0497 0.5057 -0.5809 36 1 6.0491 2.2803 -0.7191 37 1 6.0187 4.1179 -2.3239 38 1 6.6414 5.5817 -4.2003 39 1 7.4161 4.6117 -6.3238 40 1 7.5811 2.1710 -6.5836 41 1 8.3182 -0.8248 -5.3641 42 1 6.6822 -1.5236 -5.3056 43 1 7.0471 -0.2066 -6.4460 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000056484946.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:20 Heat of formation + Delta-G solvation = -18.195856 kcal Electronic energy + Delta-G solvation = -27173.815965 eV Core-core repulsion = 23412.566870 eV Total energy + Delta-G solvation = -3761.249095 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.50850 -40.56520 -39.33264 -37.33302 -36.92658 -36.35209 -34.62023 -33.34348 -31.43938 -31.25043 -29.38651 -28.01886 -27.27351 -25.93207 -23.48212 -23.39849 -22.72674 -21.72431 -21.03477 -19.18243 -18.92791 -18.49952 -17.90907 -17.32688 -17.11058 -16.72793 -16.31563 -15.97404 -15.70662 -15.57218 -15.30576 -14.99944 -14.91841 -14.75163 -14.30059 -14.25415 -13.93808 -13.44530 -13.36427 -13.30514 -13.16430 -13.02751 -12.92471 -12.66463 -12.46409 -12.08908 -12.04768 -12.01543 -11.82627 -11.69878 -11.60240 -11.44547 -11.06931 -10.48240 -9.58570 -9.30477 -8.78687 -8.36713 -6.13026 0.28792 0.46661 1.04875 1.38156 1.48666 1.60715 1.76913 1.86671 2.18798 2.30147 2.80605 2.90807 3.02312 3.53774 3.69674 4.02157 4.04813 4.09346 4.18110 4.21705 4.28611 4.34602 4.40297 4.45560 4.48736 4.49725 4.63985 4.71819 4.73247 4.89566 4.90621 5.01907 5.12316 5.14423 5.26848 5.29763 5.37982 5.49487 5.54242 5.60133 5.73138 5.85651 5.89476 6.31681 6.35201 7.02181 7.05507 7.44530 7.89514 8.65038 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.014189 B = 0.004260 C = 0.003950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.857747 B = 6570.942401 C = 7087.497549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.126 4.126 3 C 0.117 3.883 4 N -0.439 5.439 5 C -0.368 4.368 6 H 0.098 0.902 7 C 0.014 3.986 8 N -0.882 5.882 9 Si 0.983 3.017 10 H -0.261 1.261 11 H -0.274 1.274 12 H -0.276 1.276 13 C 0.438 3.562 14 O -0.629 6.629 15 C 0.141 3.859 16 N -0.525 5.525 17 C 0.066 3.934 18 C -0.121 4.121 19 C -0.104 4.104 20 C -0.103 4.103 21 C -0.098 4.098 22 C 0.069 3.931 23 N -0.540 5.540 24 C 0.095 3.905 25 C 0.664 3.336 26 O -0.604 6.604 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.051 0.949 30 H 0.029 0.971 31 H 0.056 0.944 32 H 0.102 0.898 33 H 0.029 0.971 34 H 0.276 0.724 35 H 0.105 0.895 36 H 0.127 0.873 37 H 0.117 0.883 38 H 0.160 0.840 39 H 0.175 0.825 40 H 0.165 0.835 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.871 2.702 -11.355 14.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.165 4.165 3 C -0.006 4.006 4 N -0.156 5.156 5 C -0.495 4.495 6 H 0.115 0.885 7 C -0.191 4.191 8 N -0.518 5.518 9 Si 0.806 3.194 10 H -0.185 1.185 11 H -0.199 1.199 12 H -0.201 1.201 13 C 0.227 3.773 14 O -0.517 6.517 15 C 0.016 3.984 16 N -0.244 5.244 17 C -0.034 4.034 18 C -0.142 4.142 19 C -0.124 4.124 20 C -0.122 4.122 21 C -0.118 4.118 22 C -0.032 4.032 23 N -0.262 5.262 24 C -0.044 4.044 25 C 0.367 3.633 26 O -0.485 6.485 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.075 0.925 32 H 0.119 0.881 33 H 0.048 0.952 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.145 0.855 37 H 0.136 0.864 38 H 0.178 0.822 39 H 0.193 0.807 40 H 0.182 0.818 41 H 0.106 0.894 42 H 0.090 0.910 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.352 1.908 -11.384 14.248 hybrid contribution -0.277 -0.403 1.348 1.434 sum 8.075 1.505 -10.036 12.969 Atomic orbital electron populations 1.21593 0.93233 1.02383 1.01916 1.21737 0.97618 0.97086 1.00055 1.21456 0.81053 0.96094 1.01996 1.43705 1.05410 1.61647 1.04883 1.19817 1.08633 1.30722 0.90318 0.88487 1.26137 0.96536 0.92561 1.03853 1.70014 1.30429 1.16915 1.34416 0.85046 0.78533 0.78675 0.77174 1.18505 1.19949 1.20138 1.21123 0.90594 0.81753 0.83861 1.90509 1.70802 1.57628 1.32780 1.21073 0.92147 1.05856 0.79347 1.44787 1.60357 1.05626 1.13600 1.18565 1.04136 0.90816 0.89917 1.20365 1.03416 0.88738 1.01729 1.21255 0.98404 1.00731 0.91960 1.21341 0.98910 0.93611 0.98331 1.20491 1.01927 0.92697 0.96723 1.18489 1.05938 0.82516 0.96254 1.45074 1.62113 1.06303 1.12668 1.22025 1.01961 0.90507 0.89927 1.16223 0.80895 0.84044 0.82138 1.90920 1.63215 1.22349 1.72018 0.91011 0.91989 0.92993 0.95230 0.92500 0.88053 0.95202 0.91372 0.87718 0.85530 0.86447 0.82214 0.80732 0.81795 0.89421 0.91027 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.65 9.91 71.98 0.71 -3.94 16 2 C -0.13 -5.61 6.23 30.60 0.19 -5.42 16 3 C 0.12 5.95 4.92 86.38 0.42 6.37 16 4 N -0.44 -23.14 2.55 -635.53 -1.62 -24.76 16 5 C -0.37 -18.58 8.70 84.04 0.73 -17.85 16 6 H 0.10 4.67 6.98 -2.91 -0.02 4.65 16 7 C 0.01 0.67 4.94 84.93 0.42 1.09 16 8 N -0.88 -45.17 11.31 21.66 0.24 -44.92 16 9 Si 0.98 38.29 29.60 68.60 2.03 40.32 16 10 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 11 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 12 H -0.28 -10.64 7.11 99.48 0.71 -9.93 16 13 C 0.44 23.24 7.68 87.66 0.67 23.91 16 14 O -0.63 -36.99 16.08 -3.06 -0.05 -37.04 16 15 C 0.14 6.34 5.12 85.63 0.44 6.78 16 16 N -0.52 -22.66 2.27 -652.48 -1.48 -24.14 16 17 C 0.07 2.42 6.83 38.39 0.26 2.68 16 18 C -0.12 -3.76 10.02 22.34 0.22 -3.53 16 19 C -0.10 -2.23 10.03 22.29 0.22 -2.00 16 20 C -0.10 -1.74 10.03 22.29 0.22 -1.51 16 21 C -0.10 -1.96 10.02 22.34 0.22 -1.74 16 22 C 0.07 2.09 6.83 38.39 0.26 2.35 16 23 N -0.54 -18.10 3.18 -671.87 -2.14 -20.24 16 24 C 0.10 2.11 11.01 127.77 1.41 3.52 16 25 C 0.66 29.24 8.45 179.14 1.51 30.76 16 26 O -0.60 -30.52 17.48 -4.31 -0.08 -30.59 16 27 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.06 2.50 8.14 -2.39 -0.02 2.49 16 32 H 0.10 5.28 5.34 -2.39 -0.01 5.27 16 33 H 0.03 1.59 7.56 -2.39 -0.02 1.58 16 34 H 0.28 13.16 8.31 -92.71 -0.77 12.39 16 35 H 0.10 4.69 7.53 -2.39 -0.02 4.67 16 36 H 0.13 5.18 8.10 -2.39 -0.02 5.16 16 37 H 0.12 3.80 8.06 -2.91 -0.02 3.78 16 38 H 0.16 2.40 8.06 -2.91 -0.02 2.37 16 39 H 0.18 1.43 8.06 -2.91 -0.02 1.40 16 40 H 0.16 1.98 8.06 -2.91 -0.02 1.96 16 41 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 1.78 8.03 -2.39 -0.02 1.76 16 43 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -76.69 365.59 5.85 -70.84 By element: Atomic # 1 Polarization: 28.07 SS G_CDS: 1.01 Total: 29.09 kcal Atomic # 6 Polarization: 33.53 SS G_CDS: 7.93 Total: 41.46 kcal Atomic # 7 Polarization: -109.06 SS G_CDS: -5.00 Total: -114.06 kcal Atomic # 8 Polarization: -67.51 SS G_CDS: -0.12 Total: -67.64 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -76.69 5.85 -70.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000056484946.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.642 kcal (2) G-P(sol) polarization free energy of solvation -76.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds