Wall clock time and date at job start Tue Mar 31 2020 11:21:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53007 * 109.46759 * 2 1 4 4 N 1.46493 * 109.46760 * 180.02562 * 3 2 1 5 5 C 1.36717 * 120.00466 * 264.61539 * 4 3 2 6 6 H 1.07997 * 120.00463 * 141.67366 * 5 4 3 7 7 C 1.39127 * 119.99685 * 321.68182 * 5 4 3 8 8 N 1.31328 * 119.99730 * 339.37355 * 7 5 4 9 9 Si 1.86795 * 120.00217 * 159.37629 * 7 5 4 10 10 H 1.48504 * 109.47205 * 59.99836 * 9 7 5 11 11 H 1.48501 * 109.47488 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47166 * 299.99997 * 9 7 5 13 13 C 1.34786 * 120.00329 * 84.61709 * 4 3 2 14 14 O 1.21753 * 120.00055 * 179.97438 * 13 4 3 15 15 C 1.46230 * 119.99401 * 0.02562 * 13 4 3 16 16 C 1.34965 * 119.99684 * 179.97438 * 15 13 4 17 17 C 1.47172 * 120.00079 * 179.97438 * 16 15 13 18 18 C 1.39969 * 120.52124 * 0.02562 * 17 16 15 19 19 N 1.31687 * 120.83694 * 179.97438 * 18 17 16 20 20 C 1.31773 * 122.07324 * 359.97438 * 19 18 17 21 21 C 1.39664 * 120.95108 * 359.97438 * 20 19 18 22 22 C 1.47871 * 120.47615 * 180.02562 * 21 20 19 23 23 O 1.21544 * 120.00033 * 179.97438 * 22 21 20 24 24 N 1.34777 * 119.99772 * 359.97438 * 22 21 20 25 25 C 1.46500 * 120.00036 * 179.97438 * 24 22 21 26 26 C 1.39697 * 119.05128 * 359.76369 * 21 20 19 27 27 H 1.08997 * 109.46960 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47475 * 300.00026 * 1 2 3 29 29 H 1.08997 * 109.47535 * 60.00305 * 1 2 3 30 30 H 1.08996 * 109.46967 * 240.00093 * 2 1 3 31 31 H 1.08991 * 109.47107 * 119.99722 * 2 1 3 32 32 H 1.08997 * 109.47149 * 59.99774 * 3 2 1 33 33 H 1.08997 * 109.46848 * 300.00116 * 3 2 1 34 34 H 0.97002 * 119.99354 * 179.97438 * 8 7 5 35 35 H 1.07997 * 120.00466 * 0.02562 * 15 13 4 36 36 H 1.07998 * 119.99924 * 359.97438 * 16 15 13 37 37 H 1.08001 * 119.57913 * 359.97438 * 18 17 16 38 38 H 1.08001 * 119.52386 * 180.02562 * 20 19 18 39 39 H 0.97004 * 120.00045 * 0.02562 * 24 22 21 40 40 H 1.08994 * 109.46921 * 179.97438 * 25 24 22 41 41 H 1.08998 * 109.47226 * 300.00020 * 25 24 22 42 42 H 1.09003 * 109.46745 * 60.00328 * 25 24 22 43 43 H 1.08004 * 120.93464 * 180.23185 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1890 1.5535 1.1778 6 1 5.0945 0.9855 1.3321 7 6 3.7186 2.3980 2.1784 8 7 2.8889 3.3712 1.8799 9 14 4.2673 2.1478 3.9463 10 1 5.7441 2.2804 4.0298 11 1 3.6292 3.1715 4.8124 12 1 3.8655 0.7929 4.4023 13 6 4.1784 1.3333 -1.1630 14 8 5.3959 1.3337 -1.1635 15 6 3.4466 1.2152 -2.4235 16 6 4.1210 1.1063 -3.5876 17 6 3.3846 0.9869 -4.8562 18 6 1.9850 0.9857 -4.8683 19 7 1.3198 0.8797 -5.9999 20 6 1.9301 0.7714 -7.1628 21 6 3.3243 0.7649 -7.2444 22 6 3.9982 0.6433 -8.5550 23 8 5.2121 0.6391 -8.6161 24 7 3.2664 0.5373 -9.6818 25 6 3.9340 0.4174 -10.9803 26 6 4.0731 0.8804 -6.0708 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8899 32 1 1.6765 1.9564 0.8899 33 1 1.6765 1.9564 -0.8900 34 1 2.5606 3.9598 2.5776 35 1 2.3667 1.2160 -2.4232 36 1 5.2010 1.1067 -3.5880 37 1 1.4437 1.0728 -3.9378 38 1 1.3436 0.6872 -8.0658 39 1 2.2976 0.5410 -9.6331 40 1 3.1848 0.3424 -11.7684 41 1 4.5555 1.2962 -11.1518 42 1 4.5583 -0.4761 -10.9867 43 1 5.1528 0.8826 -6.0990 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110655742.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:01 Heat of formation + Delta-G solvation = -40.131984 kcal Electronic energy + Delta-G solvation = -25404.810361 eV Core-core repulsion = 21642.610044 eV Total energy + Delta-G solvation = -3762.200317 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.72863 -40.56069 -40.04886 -37.22209 -35.95870 -35.44257 -34.53339 -33.55397 -33.03053 -31.18576 -28.09118 -27.82533 -26.71802 -25.56504 -24.52983 -23.22777 -22.41759 -21.57244 -20.04989 -19.24079 -18.81206 -18.06915 -18.00763 -17.41937 -16.88720 -16.45254 -16.42206 -15.96308 -15.58121 -15.52481 -15.35469 -14.97419 -14.86325 -14.64715 -14.22559 -14.04571 -13.87255 -13.59517 -13.39164 -13.22493 -13.09176 -13.00802 -12.92389 -12.56024 -12.27294 -12.10374 -11.97606 -11.86773 -11.53786 -11.52853 -10.91892 -10.83365 -10.59804 -10.45867 -10.20355 -9.60360 -9.37634 -8.39820 -6.08668 -0.72567 -0.29691 0.88160 1.40515 1.41886 1.50861 1.74467 2.07098 2.26513 2.48774 2.80295 2.99453 3.07090 3.20022 3.50367 3.65748 3.72582 3.74582 3.92335 4.14146 4.17048 4.32495 4.36908 4.44307 4.56462 4.62193 4.63980 4.77201 4.83130 4.84862 4.98063 4.99195 5.16768 5.26379 5.31146 5.32793 5.34445 5.40494 5.42818 5.48624 5.60554 6.19080 6.40059 6.52495 6.70519 7.07843 7.14534 7.40920 8.04328 8.62594 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.024260 B = 0.002580 C = 0.002398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.863281 B =10850.978845 C =11673.588262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.133 4.133 3 C 0.104 3.896 4 N -0.436 5.436 5 C -0.345 4.345 6 H 0.063 0.937 7 C 0.007 3.993 8 N -0.880 5.880 9 Si 0.982 3.018 10 H -0.278 1.278 11 H -0.269 1.269 12 H -0.262 1.262 13 C 0.459 3.541 14 O -0.640 6.640 15 C -0.166 4.166 16 C -0.055 4.055 17 C -0.115 4.115 18 C 0.138 3.862 19 N -0.489 5.489 20 C 0.147 3.853 21 C -0.194 4.194 22 C 0.563 3.437 23 O -0.578 6.578 24 N -0.712 5.712 25 C 0.082 3.918 26 C -0.012 4.012 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.070 0.930 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.277 0.723 35 H 0.152 0.848 36 H 0.117 0.883 37 H 0.180 0.820 38 H 0.203 0.797 39 H 0.420 0.580 40 H 0.119 0.881 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.423 -5.811 -20.499 24.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.171 4.171 3 C -0.019 4.019 4 N -0.152 5.152 5 C -0.473 4.473 6 H 0.081 0.919 7 C -0.197 4.197 8 N -0.517 5.517 9 Si 0.805 3.195 10 H -0.204 1.204 11 H -0.193 1.193 12 H -0.186 1.186 13 C 0.252 3.748 14 O -0.530 6.530 15 C -0.187 4.187 16 C -0.077 4.077 17 C -0.117 4.117 18 C -0.019 4.019 19 N -0.197 5.197 20 C -0.011 4.011 21 C -0.200 4.200 22 C 0.349 3.651 23 O -0.458 6.458 24 N -0.364 5.364 25 C -0.061 4.061 26 C -0.038 4.038 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.169 0.831 36 H 0.135 0.865 37 H 0.197 0.803 38 H 0.219 0.781 39 H 0.258 0.742 40 H 0.137 0.863 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -11.062 -5.639 -20.410 23.891 hybrid contribution 1.455 0.192 1.226 1.912 sum -9.607 -5.447 -19.185 22.136 Atomic orbital electron populations 1.21643 0.92991 1.02501 1.02436 1.21912 0.97626 0.96229 1.01381 1.21782 0.79673 0.96943 1.03531 1.43655 1.06302 1.60672 1.04555 1.19331 1.10407 1.25359 0.92209 0.91946 1.26178 0.96833 0.92631 1.04046 1.69954 1.32523 1.13913 1.35280 0.85186 0.78400 0.78825 0.77119 1.20363 1.19337 1.18645 1.19027 0.87420 0.82869 0.85498 1.90597 1.16049 1.58447 1.87913 1.23156 1.00987 1.02930 0.91595 1.21981 0.99540 0.95923 0.90236 1.19871 0.95092 1.03906 0.92857 1.23586 0.90134 0.90479 0.97711 1.67774 1.40286 1.13105 0.98504 1.23615 0.89982 0.90248 0.97276 1.20885 0.96030 1.09261 0.93778 1.18168 0.86367 0.75943 0.84588 1.90788 1.15474 1.51937 1.87635 1.45599 1.11227 1.73428 1.06147 1.21770 0.99487 1.01566 0.83273 1.22001 1.01370 0.89933 0.90491 0.91213 0.93125 0.91077 0.92099 0.93729 0.89689 0.91248 0.91343 0.83056 0.86503 0.80345 0.78069 0.74196 0.86302 0.92960 0.92913 0.84078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.91 71.98 0.71 -2.73 16 2 C -0.13 -4.49 6.11 30.60 0.19 -4.30 16 3 C 0.10 4.33 4.56 86.38 0.39 4.72 16 4 N -0.44 -22.58 2.52 -640.57 -1.61 -24.19 16 5 C -0.34 -19.72 8.88 84.15 0.75 -18.98 16 6 H 0.06 3.84 7.78 -2.91 -0.02 3.81 16 7 C 0.01 0.38 4.91 84.98 0.42 0.80 16 8 N -0.88 -47.00 11.55 21.69 0.25 -46.75 16 9 Si 0.98 42.09 29.60 68.60 2.03 44.13 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 11 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 12 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 13 C 0.46 23.53 7.52 86.32 0.65 24.18 16 14 O -0.64 -38.47 16.11 -4.52 -0.07 -38.54 16 15 C -0.17 -6.26 8.13 23.59 0.19 -6.07 16 16 C -0.06 -1.88 9.48 23.87 0.23 -1.65 16 17 C -0.12 -3.09 5.88 -20.08 -0.12 -3.21 16 18 C 0.14 3.16 10.59 85.13 0.90 4.06 16 19 N -0.49 -9.94 10.33 -193.45 -2.00 -11.94 16 20 C 0.15 2.30 10.71 85.05 0.91 3.21 16 21 C -0.19 -3.99 5.88 -20.03 -0.12 -4.11 16 22 C 0.56 11.76 7.78 86.79 0.68 12.43 16 23 O -0.58 -17.39 16.41 -3.85 -0.06 -17.45 16 24 N -0.71 -7.98 5.67 -487.46 -2.76 -10.74 16 25 C 0.08 0.73 10.70 127.77 1.37 2.10 16 26 C -0.01 -0.30 9.48 23.06 0.22 -0.08 16 27 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.06 1.94 7.57 -2.39 -0.02 1.92 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.08 3.96 5.62 -2.39 -0.01 3.94 16 33 H 0.07 2.56 6.41 -2.39 -0.02 2.55 16 34 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 35 H 0.15 4.56 4.18 -2.91 -0.01 4.55 16 36 H 0.12 4.43 7.52 -2.91 -0.02 4.41 16 37 H 0.18 3.56 6.17 -2.91 -0.02 3.54 16 38 H 0.20 1.11 6.40 -2.91 -0.02 1.10 16 39 H 0.42 1.48 6.88 -92.71 -0.64 0.84 16 40 H 0.12 0.10 8.14 -2.39 -0.02 0.08 16 41 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 43 H 0.14 3.84 7.73 -2.91 -0.02 3.81 16 Total: -1.00 -79.72 365.57 3.55 -76.17 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: 0.41 Total: 18.93 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 7.36 Total: 10.37 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -6.12 Total: -93.62 kcal Atomic # 8 Polarization: -55.85 SS G_CDS: -0.14 Total: -55.99 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.13 kcal Total: -79.72 3.55 -76.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110655742.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.042 kcal (2) G-P(sol) polarization free energy of solvation -79.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds