Wall clock time and date at job start Tue Mar 31 2020 11:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47343 * 2 1 4 4 N 1.46493 * 109.46900 * 180.02562 * 3 2 1 5 5 C 1.36942 * 120.00313 * 275.32602 * 4 3 2 6 6 H 1.07998 * 119.99719 * 37.64964 * 5 4 3 7 7 C 1.38810 * 120.00121 * 217.65189 * 5 4 3 8 8 N 1.31619 * 119.99950 * 21.23635 * 7 5 4 9 9 Si 1.86800 * 119.99764 * 201.23814 * 7 5 4 10 10 H 1.48496 * 109.47204 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46881 * 120.00144 * 9 7 5 12 12 H 1.48506 * 109.46942 * 239.99875 * 9 7 5 13 13 C 1.46506 * 120.00057 * 95.33315 * 4 3 2 14 14 C 1.50693 * 109.46759 * 269.99771 * 13 4 3 15 15 N 1.30047 * 126.18511 * 269.96822 * 14 13 4 16 16 O 1.21274 * 110.50692 * 180.02562 * 15 14 13 17 17 C 1.34228 * 109.69463 * 0.02562 * 16 15 14 18 18 C 1.47652 * 126.68662 * 180.02562 * 17 16 15 19 19 C 1.39697 * 120.08667 * 179.72812 * 18 17 16 20 20 C 1.37761 * 119.90649 * 179.74020 * 19 18 17 21 21 C 1.38943 * 120.08874 * 0.53034 * 20 19 18 22 22 O 1.35783 * 119.90996 * 179.74261 * 21 20 19 23 23 C 1.42903 * 117.00021 * 359.97438 * 22 21 20 24 24 C 1.38941 * 120.18217 * 359.71970 * 21 20 19 25 25 C 1.37764 * 120.08408 * 0.02562 * 24 21 20 26 26 N 1.32201 * 106.62603 * 0.02562 * 17 16 15 27 27 H 1.08996 * 109.47130 * 59.99931 * 1 2 3 28 28 H 1.09008 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46868 * 299.99536 * 1 2 3 30 30 H 1.09000 * 109.46904 * 239.99677 * 2 1 3 31 31 H 1.09007 * 109.46962 * 120.00480 * 2 1 3 32 32 H 1.09000 * 109.46760 * 60.00398 * 3 2 1 33 33 H 1.09001 * 109.46644 * 300.00276 * 3 2 1 34 34 H 0.97004 * 120.00198 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47446 * 149.99240 * 13 4 3 36 36 H 1.09001 * 109.46708 * 29.99442 * 13 4 3 37 37 H 1.07999 * 120.04188 * 359.96856 * 19 18 17 38 38 H 1.07995 * 119.95317 * 180.22654 * 20 19 18 39 39 H 1.09009 * 109.46742 * 59.99999 * 23 22 21 40 40 H 1.08996 * 109.47099 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47401 * 300.00594 * 23 22 21 42 42 H 1.07997 * 119.95508 * 179.97438 * 24 21 20 43 43 H 1.08007 * 120.03864 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1903 1.3320 1.1799 6 1 3.8193 0.6853 1.9612 7 6 5.3617 2.0515 1.3723 8 7 5.6025 3.1231 0.6470 9 14 6.5963 1.4987 2.6605 10 1 6.0937 0.2748 3.3348 11 1 7.8964 1.2042 2.0059 12 1 6.7807 2.5774 3.6644 13 6 4.2370 1.5604 -1.2642 14 6 4.4879 0.1863 -1.8296 15 7 5.5251 -0.5625 -1.5959 16 8 5.4358 -1.6118 -2.1973 17 6 4.2916 -1.6351 -2.8989 18 6 3.8081 -2.7314 -3.7616 19 6 2.5861 -2.6113 -4.4279 20 6 2.1410 -3.6342 -5.2362 21 6 2.9004 -4.7888 -5.3804 22 8 2.4557 -5.7970 -6.1738 23 6 1.2003 -5.6021 -6.8281 24 6 4.1138 -4.9144 -4.7153 25 6 4.5684 -3.8938 -3.9093 26 7 3.6822 -0.4852 -2.6668 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 6.4213 3.6256 0.7811 35 1 5.1895 2.0599 -1.0871 36 1 3.6476 2.1427 -1.9724 37 1 1.9931 -1.7161 -4.3125 38 1 1.1982 -3.5406 -5.7546 39 1 1.2592 -4.7256 -7.4735 40 1 0.9636 -6.4801 -7.4290 41 1 0.4208 -5.4516 -6.0812 42 1 4.7009 -5.8136 -4.8296 43 1 5.5115 -3.9924 -3.3923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111205138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:53 Heat of formation + Delta-G solvation = 73.372305 kcal Electronic energy + Delta-G solvation = -26236.333086 eV Core-core repulsion = 22479.054684 eV Total energy + Delta-G solvation = -3757.278402 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.73192 -40.36813 -37.79836 -36.54153 -34.81572 -33.07721 -32.43855 -31.41833 -30.70636 -29.62767 -27.64504 -27.00721 -25.57770 -23.99812 -23.19152 -22.44480 -21.89204 -20.55615 -20.06616 -18.50639 -17.53247 -17.36137 -16.58157 -16.34231 -16.07618 -15.83350 -14.95065 -14.66727 -14.33021 -14.02103 -13.86442 -13.70832 -13.37267 -13.19925 -13.09695 -12.72696 -12.46961 -12.29500 -11.73532 -11.69015 -11.60094 -11.42986 -11.14108 -11.07286 -10.87391 -10.75930 -10.72293 -10.51104 -10.35249 -10.11715 -10.01726 -9.80023 -9.40502 -9.29973 -8.54095 -8.13769 -6.72868 -5.90241 -3.47475 0.64214 1.11305 2.12300 2.90655 3.03392 3.24779 3.36323 3.44797 3.47920 3.63128 4.23033 4.45796 4.52475 4.60807 4.79867 4.80346 4.99820 5.02172 5.12523 5.24020 5.30824 5.32651 5.45625 5.52517 5.70916 5.78264 5.78823 5.98329 6.07321 6.09950 6.23301 6.28966 6.37399 6.47495 6.51304 6.55957 6.64491 6.69475 6.81330 6.97867 7.03035 7.19005 7.35542 7.77566 8.41529 8.99161 9.06675 9.69671 10.26361 11.12369 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017770 B = 0.003358 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.355048 B = 8335.341791 C = 9280.642583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.146 4.146 3 C 0.150 3.850 4 N -0.568 5.568 5 C -0.263 4.263 6 H 0.061 0.939 7 C 0.021 3.979 8 N -0.884 5.884 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.288 1.288 13 C 0.221 3.779 14 C 0.181 3.819 15 N -0.376 5.376 16 O 0.068 5.932 17 C 0.186 3.814 18 C -0.049 4.049 19 C -0.026 4.026 20 C -0.212 4.212 21 C 0.143 3.857 22 O -0.315 6.315 23 C 0.025 3.975 24 C -0.154 4.154 25 C -0.045 4.045 26 N -0.470 5.470 27 H 0.048 0.952 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.258 0.742 35 H 0.120 0.880 36 H 0.059 0.941 37 H 0.142 0.858 38 H 0.136 0.864 39 H 0.058 0.942 40 H 0.100 0.900 41 H 0.058 0.942 42 H 0.138 0.862 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.077 -14.687 -14.446 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.186 4.186 3 C 0.024 3.976 4 N -0.287 5.287 5 C -0.393 4.393 6 H 0.079 0.921 7 C -0.180 4.180 8 N -0.526 5.526 9 Si 0.728 3.272 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.215 1.215 13 C 0.091 3.909 14 C -0.094 4.094 15 N -0.084 5.084 16 O 0.011 5.989 17 C -0.031 4.031 18 C -0.051 4.051 19 C -0.046 4.046 20 C -0.231 4.231 21 C 0.097 3.903 22 O -0.228 6.228 23 C -0.070 4.070 24 C -0.172 4.172 25 C -0.065 4.065 26 N -0.205 5.205 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.137 0.863 36 H 0.077 0.923 37 H 0.160 0.840 38 H 0.153 0.847 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.077 0.923 42 H 0.156 0.844 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -7.517 -14.115 -13.939 21.214 hybrid contribution 0.451 -0.433 0.555 0.836 sum -7.066 -14.548 -13.384 20.994 Atomic orbital electron populations 1.21687 0.97204 1.00253 1.00980 1.22120 0.93935 1.00974 1.01553 1.20956 0.84339 0.93140 0.99139 1.43711 0.99792 1.83706 1.01510 1.19009 1.06116 1.20703 0.93467 0.92119 1.25172 1.00475 0.94290 0.98092 1.69950 1.25695 1.14658 1.42262 0.86300 0.81616 0.78368 0.80937 1.20044 1.21078 1.21484 1.19603 1.01755 0.83250 0.86278 1.28031 0.85537 1.03063 0.92779 1.74669 1.23865 0.94247 1.15635 1.85375 1.36737 1.32072 1.44765 1.26191 0.85898 0.94924 0.96117 1.17146 0.96700 0.91284 0.99967 1.21029 0.93336 0.98339 0.91883 1.21160 1.02214 0.94493 1.05191 1.19263 0.93426 0.87102 0.90538 1.86050 1.38082 1.39844 1.58848 1.23114 0.83626 1.03425 0.96842 1.20294 0.95501 1.00938 1.00494 1.21104 0.99080 0.90857 0.95467 1.72100 1.28728 1.03020 1.16636 0.93317 0.93989 0.93298 0.92358 0.93003 0.93319 0.94302 0.93250 0.86275 0.92253 0.84011 0.84659 0.92356 0.88140 0.92333 0.84367 0.84018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 9.91 37.16 0.37 -1.85 16 2 C -0.15 -2.85 6.23 -26.73 -0.17 -3.01 16 3 C 0.15 3.25 5.72 -4.05 -0.02 3.22 16 4 N -0.57 -14.34 2.42 -174.62 -0.42 -14.76 16 5 C -0.26 -7.29 9.45 -15.06 -0.14 -7.43 16 6 H 0.06 1.71 7.91 -52.49 -0.42 1.30 16 7 C 0.02 0.58 4.96 -17.43 -0.09 0.49 16 8 N -0.88 -25.25 11.47 55.49 0.64 -24.61 16 9 Si 0.90 22.23 29.60 -169.99 -5.03 17.20 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 13 C 0.22 5.38 5.95 -5.19 -0.03 5.35 16 14 C 0.18 4.14 7.62 -156.56 -1.19 2.95 16 15 N -0.38 -8.72 12.15 31.21 0.38 -8.34 16 16 O 0.07 1.34 11.13 16.58 0.18 1.52 16 17 C 0.19 3.32 8.00 -13.88 -0.11 3.21 16 18 C -0.05 -0.67 5.87 -104.97 -0.62 -1.28 16 19 C -0.03 -0.31 9.70 -39.21 -0.38 -0.69 16 20 C -0.21 -2.08 9.02 -39.49 -0.36 -2.43 16 21 C 0.14 1.44 6.69 -39.06 -0.26 1.18 16 22 O -0.32 -2.87 10.49 -19.06 -0.20 -3.07 16 23 C 0.02 0.13 9.81 101.05 0.99 1.12 16 24 C -0.15 -1.54 9.97 -39.49 -0.39 -1.93 16 25 C -0.05 -0.51 9.72 -39.22 -0.38 -0.90 16 26 N -0.47 -9.41 10.32 -10.17 -0.10 -9.52 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 1.20 7.02 -51.93 -0.36 0.83 16 31 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 32 H 0.05 1.07 8.08 -51.93 -0.42 0.65 16 33 H 0.04 0.79 7.83 -51.93 -0.41 0.38 16 34 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 35 H 0.12 3.24 5.52 -51.93 -0.29 2.96 16 36 H 0.06 1.35 7.86 -51.93 -0.41 0.94 16 37 H 0.14 1.72 7.87 -52.49 -0.41 1.31 16 38 H 0.14 0.98 6.28 -52.49 -0.33 0.65 16 39 H 0.06 0.27 7.65 -51.92 -0.40 -0.13 16 40 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.06 0.27 7.65 -51.93 -0.40 -0.12 16 42 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 43 H 0.14 1.43 7.94 -52.48 -0.42 1.01 16 LS Contribution 366.22 15.07 5.52 5.52 Total: -1.00 -31.52 366.22 -7.75 -39.27 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.93 Total: -1.20 kcal Atomic # 6 Polarization: 0.77 SS G_CDS: -2.78 Total: -2.01 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: 0.49 Total: -57.24 kcal Atomic # 8 Polarization: -1.53 SS G_CDS: -0.02 Total: -1.54 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.03 Total: 17.20 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -31.52 -7.75 -39.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111205138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.644 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds