Wall clock time and date at job start Tue Mar 31 2020 11:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47343 * 2 1 4 4 N 1.46493 * 109.46900 * 180.02562 * 3 2 1 5 5 C 1.36942 * 120.00313 * 275.32602 * 4 3 2 6 6 H 1.07998 * 119.99719 * 37.64964 * 5 4 3 7 7 C 1.38810 * 120.00121 * 217.65189 * 5 4 3 8 8 N 1.31619 * 119.99950 * 21.23635 * 7 5 4 9 9 Si 1.86800 * 119.99764 * 201.23814 * 7 5 4 10 10 H 1.48496 * 109.47204 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46881 * 120.00144 * 9 7 5 12 12 H 1.48506 * 109.46942 * 239.99875 * 9 7 5 13 13 C 1.46506 * 120.00057 * 95.33315 * 4 3 2 14 14 C 1.50693 * 109.46759 * 269.99771 * 13 4 3 15 15 N 1.30047 * 126.18511 * 269.96822 * 14 13 4 16 16 O 1.21274 * 110.50692 * 180.02562 * 15 14 13 17 17 C 1.34228 * 109.69463 * 0.02562 * 16 15 14 18 18 C 1.47652 * 126.68662 * 180.02562 * 17 16 15 19 19 C 1.39697 * 120.08667 * 179.72812 * 18 17 16 20 20 C 1.37761 * 119.90649 * 179.74020 * 19 18 17 21 21 C 1.38943 * 120.08874 * 0.53034 * 20 19 18 22 22 O 1.35783 * 119.90996 * 179.74261 * 21 20 19 23 23 C 1.42903 * 117.00021 * 359.97438 * 22 21 20 24 24 C 1.38941 * 120.18217 * 359.71970 * 21 20 19 25 25 C 1.37764 * 120.08408 * 0.02562 * 24 21 20 26 26 N 1.32201 * 106.62603 * 0.02562 * 17 16 15 27 27 H 1.08996 * 109.47130 * 59.99931 * 1 2 3 28 28 H 1.09008 * 109.47103 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46868 * 299.99536 * 1 2 3 30 30 H 1.09000 * 109.46904 * 239.99677 * 2 1 3 31 31 H 1.09007 * 109.46962 * 120.00480 * 2 1 3 32 32 H 1.09000 * 109.46760 * 60.00398 * 3 2 1 33 33 H 1.09001 * 109.46644 * 300.00276 * 3 2 1 34 34 H 0.97004 * 120.00198 * 180.02562 * 8 7 5 35 35 H 1.08998 * 109.47446 * 149.99240 * 13 4 3 36 36 H 1.09001 * 109.46708 * 29.99442 * 13 4 3 37 37 H 1.07999 * 120.04188 * 359.96856 * 19 18 17 38 38 H 1.07995 * 119.95317 * 180.22654 * 20 19 18 39 39 H 1.09009 * 109.46742 * 59.99999 * 23 22 21 40 40 H 1.08996 * 109.47099 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.47401 * 300.00594 * 23 22 21 42 42 H 1.07997 * 119.95508 * 179.97438 * 24 21 20 43 43 H 1.08007 * 120.03864 * 179.97438 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1903 1.3320 1.1799 6 1 3.8193 0.6853 1.9612 7 6 5.3617 2.0515 1.3723 8 7 5.6025 3.1231 0.6470 9 14 6.5963 1.4987 2.6605 10 1 6.0937 0.2748 3.3348 11 1 7.8964 1.2042 2.0059 12 1 6.7807 2.5774 3.6644 13 6 4.2370 1.5604 -1.2642 14 6 4.4879 0.1863 -1.8296 15 7 5.5251 -0.5625 -1.5959 16 8 5.4358 -1.6118 -2.1973 17 6 4.2916 -1.6351 -2.8989 18 6 3.8081 -2.7314 -3.7616 19 6 2.5861 -2.6113 -4.4279 20 6 2.1410 -3.6342 -5.2362 21 6 2.9004 -4.7888 -5.3804 22 8 2.4557 -5.7970 -6.1738 23 6 1.2003 -5.6021 -6.8281 24 6 4.1138 -4.9144 -4.7153 25 6 4.5684 -3.8938 -3.9093 26 7 3.6822 -0.4852 -2.6668 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 6.4213 3.6256 0.7811 35 1 5.1895 2.0599 -1.0871 36 1 3.6476 2.1427 -1.9724 37 1 1.9931 -1.7161 -4.3125 38 1 1.1982 -3.5406 -5.7546 39 1 1.2592 -4.7256 -7.4735 40 1 0.9636 -6.4801 -7.4290 41 1 0.4208 -5.4516 -6.0812 42 1 4.7009 -5.8136 -4.8296 43 1 5.5115 -3.9924 -3.3923 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000111205138.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:53 Heat of formation + Delta-G solvation = 54.580196 kcal Electronic energy + Delta-G solvation = -26237.147973 eV Core-core repulsion = 22479.054684 eV Total energy + Delta-G solvation = -3758.093289 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -46.35991 -41.13518 -38.61532 -38.37568 -36.41841 -34.76860 -33.94693 -32.53491 -32.25098 -30.73837 -28.82685 -28.22588 -27.41740 -25.30354 -24.62398 -23.59508 -23.25316 -22.00529 -21.69370 -19.37480 -19.16382 -18.84036 -18.32371 -17.38996 -17.05684 -16.82230 -16.66753 -16.04772 -15.72865 -15.51246 -15.24401 -14.96235 -14.73255 -14.42759 -13.97160 -13.93131 -13.79844 -13.41484 -13.26211 -13.19707 -12.82638 -12.80109 -12.74261 -12.60023 -12.50708 -12.31021 -12.17334 -12.03033 -11.91590 -11.85606 -11.80161 -11.35903 -10.95752 -10.61640 -10.13512 -9.14530 -8.75456 -7.98783 -5.60365 -0.45029 0.28930 0.78303 1.35906 1.42120 1.47583 1.50709 1.89694 2.29634 2.41889 2.69415 2.78918 3.14504 3.38304 3.64241 3.75615 3.85882 4.11738 4.13830 4.20858 4.33031 4.36431 4.45593 4.46849 4.54524 4.59632 4.71458 4.78150 4.79585 4.82264 4.91834 4.98408 5.10434 5.12390 5.16608 5.20127 5.24439 5.35730 5.37537 5.41904 5.55329 5.57405 5.59300 6.33329 6.34176 7.00818 7.40968 7.67376 8.21225 9.00596 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017770 B = 0.003358 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.355048 B = 8335.341791 C = 9280.642583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.134 4.134 3 C 0.149 3.851 4 N -0.583 5.583 5 C -0.271 4.271 6 H 0.049 0.951 7 C -0.021 4.021 8 N -0.908 5.908 9 Si 0.951 3.049 10 H -0.274 1.274 11 H -0.290 1.290 12 H -0.279 1.279 13 C 0.228 3.772 14 C 0.172 3.828 15 N -0.411 5.411 16 O 0.070 5.930 17 C 0.209 3.791 18 C -0.084 4.084 19 C -0.026 4.026 20 C -0.206 4.206 21 C 0.153 3.847 22 O -0.324 6.324 23 C 0.013 3.987 24 C -0.155 4.155 25 C -0.039 4.039 26 N -0.483 5.483 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.046 0.954 31 H 0.028 0.972 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.257 0.743 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.137 0.863 38 H 0.164 0.836 39 H 0.069 0.931 40 H 0.121 0.879 41 H 0.068 0.932 42 H 0.160 0.840 43 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.721 -17.118 -16.079 25.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.173 4.173 3 C 0.024 3.976 4 N -0.303 5.303 5 C -0.401 4.401 6 H 0.067 0.933 7 C -0.219 4.219 8 N -0.551 5.551 9 Si 0.779 3.221 10 H -0.199 1.199 11 H -0.216 1.216 12 H -0.205 1.205 13 C 0.098 3.902 14 C -0.104 4.104 15 N -0.121 5.121 16 O 0.013 5.987 17 C -0.007 4.007 18 C -0.087 4.087 19 C -0.046 4.046 20 C -0.225 4.225 21 C 0.106 3.894 22 O -0.236 6.236 23 C -0.081 4.081 24 C -0.173 4.173 25 C -0.059 4.059 26 N -0.217 5.217 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.107 0.893 36 H 0.086 0.914 37 H 0.155 0.845 38 H 0.182 0.818 39 H 0.087 0.913 40 H 0.140 0.860 41 H 0.087 0.913 42 H 0.178 0.822 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -9.201 -16.557 -15.588 24.532 hybrid contribution 0.842 0.099 0.832 1.188 sum -8.358 -16.459 -14.756 23.632 Atomic orbital electron populations 1.21608 0.93692 1.01764 1.02101 1.21941 0.96880 0.98759 0.99769 1.21072 0.82541 0.94682 0.99344 1.43861 1.01155 1.84163 1.01095 1.19067 1.06770 1.20173 0.94132 0.93343 1.25760 1.01751 0.94444 0.99979 1.70039 1.25982 1.15449 1.43590 0.85485 0.79334 0.78130 0.79166 1.19876 1.21643 1.20535 1.19267 1.00339 0.84237 0.86342 1.27609 0.86294 1.02698 0.93780 1.74619 1.24850 0.95416 1.17224 1.85310 1.37553 1.30881 1.44976 1.26954 0.84334 0.94976 0.94482 1.17298 0.98471 0.91268 1.01622 1.21068 0.92620 0.98912 0.91985 1.21382 1.03152 0.93538 1.04412 1.19444 0.93120 0.87171 0.89655 1.86063 1.39730 1.39399 1.58431 1.23460 0.82229 1.05134 0.97315 1.20533 0.95854 1.01157 0.99779 1.21217 0.99095 0.90228 0.95367 1.72043 1.28703 1.03899 1.17090 0.91884 0.92286 0.92490 0.93507 0.95357 0.93977 0.93028 0.93372 0.89323 0.91381 0.84477 0.81831 0.91250 0.86048 0.91341 0.82196 0.83190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.88 9.91 71.98 0.71 -3.17 16 2 C -0.13 -5.20 6.23 30.60 0.19 -5.01 16 3 C 0.15 6.49 5.72 86.38 0.49 6.99 16 4 N -0.58 -30.26 2.42 -706.36 -1.71 -31.97 16 5 C -0.27 -15.47 9.45 84.03 0.79 -14.67 16 6 H 0.05 2.83 7.91 -2.91 -0.02 2.80 16 7 C -0.02 -1.18 4.96 84.86 0.42 -0.76 16 8 N -0.91 -53.37 11.47 21.65 0.25 -53.12 16 9 Si 0.95 46.68 29.60 68.60 2.03 48.71 16 10 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16 11 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 C 0.23 11.50 5.95 85.63 0.51 12.01 16 14 C 0.17 8.07 7.62 138.52 1.06 9.13 16 15 N -0.41 -19.70 12.15 -58.53 -0.71 -20.41 16 16 O 0.07 2.83 11.13 69.40 0.77 3.60 16 17 C 0.21 7.48 8.00 87.24 0.70 8.18 16 18 C -0.08 -2.22 5.87 -20.09 -0.12 -2.34 16 19 C -0.03 -0.58 9.70 22.51 0.22 -0.36 16 20 C -0.21 -3.40 9.02 22.33 0.20 -3.20 16 21 C 0.15 2.59 6.69 22.61 0.15 2.74 16 22 O -0.32 -4.68 10.49 -91.11 -0.96 -5.64 16 23 C 0.01 0.09 9.81 113.37 1.11 1.20 16 24 C -0.15 -2.67 9.97 22.33 0.22 -2.44 16 25 C -0.04 -0.83 9.72 22.51 0.22 -0.61 16 26 N -0.48 -19.64 10.32 -302.68 -3.12 -22.76 16 27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.05 1.92 7.02 -2.39 -0.02 1.90 16 31 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.04 1.86 8.08 -2.39 -0.02 1.84 16 33 H 0.05 2.09 7.83 -2.39 -0.02 2.07 16 34 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 35 H 0.09 5.06 5.52 -2.39 -0.01 5.05 16 36 H 0.07 3.20 7.86 -2.39 -0.02 3.18 16 37 H 0.14 3.16 7.87 -2.91 -0.02 3.14 16 38 H 0.16 1.71 6.28 -2.91 -0.02 1.69 16 39 H 0.07 0.35 7.65 -2.38 -0.02 0.33 16 40 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.07 0.36 7.65 -2.39 -0.02 0.34 16 42 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 43 H 0.15 2.82 7.94 -2.91 -0.02 2.80 16 Total: -1.00 -69.96 366.22 4.46 -65.51 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: 1.02 Total: 8.41 kcal Atomic # 6 Polarization: 0.80 SS G_CDS: 6.88 Total: 7.68 kcal Atomic # 7 Polarization: -122.97 SS G_CDS: -5.29 Total: -128.26 kcal Atomic # 8 Polarization: -1.86 SS G_CDS: -0.18 Total: -2.04 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal Total: -69.96 4.46 -65.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111205138.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.086 kcal (2) G-P(sol) polarization free energy of solvation -69.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds