Wall clock time and date at job start Tue Mar 31 2020 11:10:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 C 1.52999 * 109.47343 * 2 1
4 4 N 1.46493 * 109.46900 * 180.02562 * 3 2 1
5 5 C 1.36942 * 120.00313 * 275.32602 * 4 3 2
6 6 H 1.07998 * 119.99719 * 37.64964 * 5 4 3
7 7 C 1.38810 * 120.00121 * 217.65189 * 5 4 3
8 8 N 1.31619 * 119.99950 * 21.23635 * 7 5 4
9 9 Si 1.86800 * 119.99764 * 201.23814 * 7 5 4
10 10 H 1.48496 * 109.47204 * 0.02562 * 9 7 5
11 11 H 1.48503 * 109.46881 * 120.00144 * 9 7 5
12 12 H 1.48506 * 109.46942 * 239.99875 * 9 7 5
13 13 C 1.46506 * 120.00057 * 95.33315 * 4 3 2
14 14 C 1.50693 * 109.46759 * 269.99771 * 13 4 3
15 15 N 1.30047 * 126.18511 * 269.96822 * 14 13 4
16 16 O 1.21274 * 110.50692 * 180.02562 * 15 14 13
17 17 C 1.34228 * 109.69463 * 0.02562 * 16 15 14
18 18 C 1.47652 * 126.68662 * 180.02562 * 17 16 15
19 19 C 1.39697 * 120.08667 * 179.72812 * 18 17 16
20 20 C 1.37761 * 119.90649 * 179.74020 * 19 18 17
21 21 C 1.38943 * 120.08874 * 0.53034 * 20 19 18
22 22 O 1.35783 * 119.90996 * 179.74261 * 21 20 19
23 23 C 1.42903 * 117.00021 * 359.97438 * 22 21 20
24 24 C 1.38941 * 120.18217 * 359.71970 * 21 20 19
25 25 C 1.37764 * 120.08408 * 0.02562 * 24 21 20
26 26 N 1.32201 * 106.62603 * 0.02562 * 17 16 15
27 27 H 1.08996 * 109.47130 * 59.99931 * 1 2 3
28 28 H 1.09008 * 109.47103 * 180.02562 * 1 2 3
29 29 H 1.09000 * 109.46868 * 299.99536 * 1 2 3
30 30 H 1.09000 * 109.46904 * 239.99677 * 2 1 3
31 31 H 1.09007 * 109.46962 * 120.00480 * 2 1 3
32 32 H 1.09000 * 109.46760 * 60.00398 * 3 2 1
33 33 H 1.09001 * 109.46644 * 300.00276 * 3 2 1
34 34 H 0.97004 * 120.00198 * 180.02562 * 8 7 5
35 35 H 1.08998 * 109.47446 * 149.99240 * 13 4 3
36 36 H 1.09001 * 109.46708 * 29.99442 * 13 4 3
37 37 H 1.07999 * 120.04188 * 359.96856 * 19 18 17
38 38 H 1.07995 * 119.95317 * 180.22654 * 20 19 18
39 39 H 1.09009 * 109.46742 * 59.99999 * 23 22 21
40 40 H 1.08996 * 109.47099 * 179.97438 * 23 22 21
41 41 H 1.08998 * 109.47401 * 300.00594 * 23 22 21
42 42 H 1.07997 * 119.95508 * 179.97438 * 24 21 20
43 43 H 1.08007 * 120.03864 * 179.97438 * 25 24 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 7 3.5050 1.4424 -0.0006
5 6 4.1903 1.3320 1.1799
6 1 3.8193 0.6853 1.9612
7 6 5.3617 2.0515 1.3723
8 7 5.6025 3.1231 0.6470
9 14 6.5963 1.4987 2.6605
10 1 6.0937 0.2748 3.3348
11 1 7.8964 1.2042 2.0059
12 1 6.7807 2.5774 3.6644
13 6 4.2370 1.5604 -1.2642
14 6 4.4879 0.1863 -1.8296
15 7 5.5251 -0.5625 -1.5959
16 8 5.4358 -1.6118 -2.1973
17 6 4.2916 -1.6351 -2.8989
18 6 3.8081 -2.7314 -3.7616
19 6 2.5861 -2.6113 -4.4279
20 6 2.1410 -3.6342 -5.2362
21 6 2.9004 -4.7888 -5.3804
22 8 2.4557 -5.7970 -6.1738
23 6 1.2003 -5.6021 -6.8281
24 6 4.1138 -4.9144 -4.7153
25 6 4.5684 -3.8938 -3.9093
26 7 3.6822 -0.4852 -2.6668
27 1 -0.3633 0.5138 -0.8899
28 1 -0.3634 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 1.8933 -0.5139 -0.8900
31 1 1.8934 -0.5139 0.8900
32 1 1.6768 1.9562 0.8900
33 1 1.6767 1.9563 -0.8900
34 1 6.4213 3.6256 0.7811
35 1 5.1895 2.0599 -1.0871
36 1 3.6476 2.1427 -1.9724
37 1 1.9931 -1.7161 -4.3125
38 1 1.1982 -3.5406 -5.7546
39 1 1.2592 -4.7256 -7.4735
40 1 0.9636 -6.4801 -7.4290
41 1 0.4208 -5.4516 -6.0812
42 1 4.7009 -5.8136 -4.8296
43 1 5.5115 -3.9924 -3.3923
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000111205138.mol2 43
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:10:53
Heat of formation + Delta-G solvation = 54.580196 kcal
Electronic energy + Delta-G solvation = -26237.147973 eV
Core-core repulsion = 22479.054684 eV
Total energy + Delta-G solvation = -3758.093289 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 317.153 amu
Computer time = 0.76 seconds
Orbital eigenvalues (eV)
-46.35991 -41.13518 -38.61532 -38.37568 -36.41841 -34.76860 -33.94693 -32.53491
-32.25098 -30.73837 -28.82685 -28.22588 -27.41740 -25.30354 -24.62398 -23.59508
-23.25316 -22.00529 -21.69370 -19.37480 -19.16382 -18.84036 -18.32371 -17.38996
-17.05684 -16.82230 -16.66753 -16.04772 -15.72865 -15.51246 -15.24401 -14.96235
-14.73255 -14.42759 -13.97160 -13.93131 -13.79844 -13.41484 -13.26211 -13.19707
-12.82638 -12.80109 -12.74261 -12.60023 -12.50708 -12.31021 -12.17334 -12.03033
-11.91590 -11.85606 -11.80161 -11.35903 -10.95752 -10.61640 -10.13512 -9.14530
-8.75456 -7.98783 -5.60365 -0.45029 0.28930 0.78303 1.35906 1.42120
1.47583 1.50709 1.89694 2.29634 2.41889 2.69415 2.78918 3.14504
3.38304 3.64241 3.75615 3.85882 4.11738 4.13830 4.20858 4.33031
4.36431 4.45593 4.46849 4.54524 4.59632 4.71458 4.78150 4.79585
4.82264 4.91834 4.98408 5.10434 5.12390 5.16608 5.20127 5.24439
5.35730 5.37537 5.41904 5.55329 5.57405 5.59300 6.33329 6.34176
7.00818 7.40968 7.67376 8.21225 9.00596
Molecular weight = 317.15amu
Principal moments of inertia in cm(-1)
A = 0.017770 B = 0.003358 C = 0.003016
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1575.355048 B = 8335.341791 C = 9280.642583
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.134 4.134
3 C 0.149 3.851
4 N -0.583 5.583
5 C -0.271 4.271
6 H 0.049 0.951
7 C -0.021 4.021
8 N -0.908 5.908
9 Si 0.951 3.049
10 H -0.274 1.274
11 H -0.290 1.290
12 H -0.279 1.279
13 C 0.228 3.772
14 C 0.172 3.828
15 N -0.411 5.411
16 O 0.070 5.930
17 C 0.209 3.791
18 C -0.084 4.084
19 C -0.026 4.026
20 C -0.206 4.206
21 C 0.153 3.847
22 O -0.324 6.324
23 C 0.013 3.987
24 C -0.155 4.155
25 C -0.039 4.039
26 N -0.483 5.483
27 H 0.062 0.938
28 H 0.058 0.942
29 H 0.056 0.944
30 H 0.046 0.954
31 H 0.028 0.972
32 H 0.042 0.958
33 H 0.051 0.949
34 H 0.257 0.743
35 H 0.089 0.911
36 H 0.068 0.932
37 H 0.137 0.863
38 H 0.164 0.836
39 H 0.069 0.931
40 H 0.121 0.879
41 H 0.068 0.932
42 H 0.160 0.840
43 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.721 -17.118 -16.079 25.418
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C -0.173 4.173
3 C 0.024 3.976
4 N -0.303 5.303
5 C -0.401 4.401
6 H 0.067 0.933
7 C -0.219 4.219
8 N -0.551 5.551
9 Si 0.779 3.221
10 H -0.199 1.199
11 H -0.216 1.216
12 H -0.205 1.205
13 C 0.098 3.902
14 C -0.104 4.104
15 N -0.121 5.121
16 O 0.013 5.987
17 C -0.007 4.007
18 C -0.087 4.087
19 C -0.046 4.046
20 C -0.225 4.225
21 C 0.106 3.894
22 O -0.236 6.236
23 C -0.081 4.081
24 C -0.173 4.173
25 C -0.059 4.059
26 N -0.217 5.217
27 H 0.081 0.919
28 H 0.077 0.923
29 H 0.075 0.925
30 H 0.065 0.935
31 H 0.046 0.954
32 H 0.060 0.940
33 H 0.070 0.930
34 H 0.066 0.934
35 H 0.107 0.893
36 H 0.086 0.914
37 H 0.155 0.845
38 H 0.182 0.818
39 H 0.087 0.913
40 H 0.140 0.860
41 H 0.087 0.913
42 H 0.178 0.822
43 H 0.168 0.832
Dipole moment (debyes) X Y Z Total
from point charges -9.201 -16.557 -15.588 24.532
hybrid contribution 0.842 0.099 0.832 1.188
sum -8.358 -16.459 -14.756 23.632
Atomic orbital electron populations
1.21608 0.93692 1.01764 1.02101 1.21941 0.96880 0.98759 0.99769
1.21072 0.82541 0.94682 0.99344 1.43861 1.01155 1.84163 1.01095
1.19067 1.06770 1.20173 0.94132 0.93343 1.25760 1.01751 0.94444
0.99979 1.70039 1.25982 1.15449 1.43590 0.85485 0.79334 0.78130
0.79166 1.19876 1.21643 1.20535 1.19267 1.00339 0.84237 0.86342
1.27609 0.86294 1.02698 0.93780 1.74619 1.24850 0.95416 1.17224
1.85310 1.37553 1.30881 1.44976 1.26954 0.84334 0.94976 0.94482
1.17298 0.98471 0.91268 1.01622 1.21068 0.92620 0.98912 0.91985
1.21382 1.03152 0.93538 1.04412 1.19444 0.93120 0.87171 0.89655
1.86063 1.39730 1.39399 1.58431 1.23460 0.82229 1.05134 0.97315
1.20533 0.95854 1.01157 0.99779 1.21217 0.99095 0.90228 0.95367
1.72043 1.28703 1.03899 1.17090 0.91884 0.92286 0.92490 0.93507
0.95357 0.93977 0.93028 0.93372 0.89323 0.91381 0.84477 0.81831
0.91250 0.86048 0.91341 0.82196 0.83190
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.88 9.91 71.98 0.71 -3.17 16
2 C -0.13 -5.20 6.23 30.60 0.19 -5.01 16
3 C 0.15 6.49 5.72 86.38 0.49 6.99 16
4 N -0.58 -30.26 2.42 -706.36 -1.71 -31.97 16
5 C -0.27 -15.47 9.45 84.03 0.79 -14.67 16
6 H 0.05 2.83 7.91 -2.91 -0.02 2.80 16
7 C -0.02 -1.18 4.96 84.86 0.42 -0.76 16
8 N -0.91 -53.37 11.47 21.65 0.25 -53.12 16
9 Si 0.95 46.68 29.60 68.60 2.03 48.71 16
10 H -0.27 -13.23 7.11 99.48 0.71 -12.52 16
11 H -0.29 -14.37 7.11 99.48 0.71 -13.67 16
12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16
13 C 0.23 11.50 5.95 85.63 0.51 12.01 16
14 C 0.17 8.07 7.62 138.52 1.06 9.13 16
15 N -0.41 -19.70 12.15 -58.53 -0.71 -20.41 16
16 O 0.07 2.83 11.13 69.40 0.77 3.60 16
17 C 0.21 7.48 8.00 87.24 0.70 8.18 16
18 C -0.08 -2.22 5.87 -20.09 -0.12 -2.34 16
19 C -0.03 -0.58 9.70 22.51 0.22 -0.36 16
20 C -0.21 -3.40 9.02 22.33 0.20 -3.20 16
21 C 0.15 2.59 6.69 22.61 0.15 2.74 16
22 O -0.32 -4.68 10.49 -91.11 -0.96 -5.64 16
23 C 0.01 0.09 9.81 113.37 1.11 1.20 16
24 C -0.15 -2.67 9.97 22.33 0.22 -2.44 16
25 C -0.04 -0.83 9.72 22.51 0.22 -0.61 16
26 N -0.48 -19.64 10.32 -302.68 -3.12 -22.76 16
27 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16
28 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16
29 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16
30 H 0.05 1.92 7.02 -2.39 -0.02 1.90 16
31 H 0.03 1.20 8.14 -2.38 -0.02 1.18 16
32 H 0.04 1.86 8.08 -2.39 -0.02 1.84 16
33 H 0.05 2.09 7.83 -2.39 -0.02 2.07 16
34 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16
35 H 0.09 5.06 5.52 -2.39 -0.01 5.05 16
36 H 0.07 3.20 7.86 -2.39 -0.02 3.18 16
37 H 0.14 3.16 7.87 -2.91 -0.02 3.14 16
38 H 0.16 1.71 6.28 -2.91 -0.02 1.69 16
39 H 0.07 0.35 7.65 -2.38 -0.02 0.33 16
40 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16
41 H 0.07 0.36 7.65 -2.39 -0.02 0.34 16
42 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16
43 H 0.15 2.82 7.94 -2.91 -0.02 2.80 16
Total: -1.00 -69.96 366.22 4.46 -65.51
By element:
Atomic # 1 Polarization: 7.39 SS G_CDS: 1.02 Total: 8.41 kcal
Atomic # 6 Polarization: 0.80 SS G_CDS: 6.88 Total: 7.68 kcal
Atomic # 7 Polarization: -122.97 SS G_CDS: -5.29 Total: -128.26 kcal
Atomic # 8 Polarization: -1.86 SS G_CDS: -0.18 Total: -2.04 kcal
Atomic # 14 Polarization: 46.68 SS G_CDS: 2.03 Total: 48.71 kcal
Total: -69.96 4.46 -65.51 kcal
The number of atoms in the molecule is 43
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000111205138.mol2 43
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 120.086 kcal
(2) G-P(sol) polarization free energy of solvation -69.962 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.124 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.506 kcal
(6) G-S(sol) free energy of system = (1) + (5) 54.580 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.76 seconds