Wall clock time and date at job start Tue Mar 31 2020 11:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46995 * 2 1 4 4 N 1.46496 * 109.46939 * 179.97438 * 3 2 1 5 5 C 1.36936 * 120.00280 * 272.13356 * 4 3 2 6 6 H 1.08003 * 119.99976 * 8.56898 * 5 4 3 7 7 C 1.38816 * 119.99923 * 188.57344 * 5 4 3 8 8 N 1.31611 * 120.00001 * 24.82650 * 7 5 4 9 9 Si 1.86800 * 119.99511 * 204.83214 * 7 5 4 10 10 H 1.48501 * 109.47333 * 90.00057 * 9 7 5 11 11 H 1.48502 * 109.46705 * 209.99839 * 9 7 5 12 12 H 1.48495 * 109.47172 * 329.99686 * 9 7 5 13 13 C 1.46505 * 119.99557 * 92.13769 * 4 3 2 14 14 C 1.50699 * 109.47281 * 89.99835 * 13 4 3 15 15 O 1.21302 * 119.99926 * 359.97438 * 14 13 4 16 16 N 1.34772 * 120.00138 * 179.97438 * 14 13 4 17 17 C 1.47056 * 121.06423 * 359.97438 * 16 14 13 18 18 C 1.50732 * 109.01814 * 221.99351 * 17 16 14 19 19 O 1.21290 * 119.60687 * 150.95600 * 18 17 16 20 20 N 1.34646 * 120.79368 * 330.92038 * 18 17 16 21 21 C 1.39912 * 120.72908 * 2.38861 * 20 18 17 22 22 C 1.38582 * 120.76833 * 193.92597 * 21 20 18 23 23 C 1.38270 * 119.84905 * 180.46371 * 22 21 20 24 24 C 1.38310 * 120.36731 * 359.97438 * 23 22 21 25 25 C 1.38350 * 120.17871 * 359.93379 * 24 23 22 26 26 C 1.38324 * 119.73501 * 359.97438 * 25 24 23 27 27 H 1.09000 * 109.47127 * 299.99695 * 1 2 3 28 28 H 1.08994 * 109.47673 * 60.00416 * 1 2 3 29 29 H 1.09009 * 109.46974 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47144 * 239.99445 * 2 1 3 31 31 H 1.09000 * 109.47059 * 119.99827 * 2 1 3 32 32 H 1.08997 * 109.46921 * 59.99669 * 3 2 1 33 33 H 1.08998 * 109.47034 * 300.00357 * 3 2 1 34 34 H 0.97005 * 120.00121 * 179.97438 * 8 7 5 35 35 H 1.08998 * 109.47431 * 329.99719 * 13 4 3 36 36 H 1.09002 * 109.46789 * 209.99280 * 13 4 3 37 37 H 1.08997 * 109.54592 * 341.85420 * 17 16 14 38 38 H 1.08997 * 109.54763 * 102.03519 * 17 16 14 39 39 H 0.97005 * 119.63882 * 182.39896 * 20 18 17 40 40 H 1.07994 * 120.08236 * 0.47679 * 22 21 20 41 41 H 1.08004 * 119.82059 * 180.02562 * 23 22 21 42 42 H 1.07993 * 119.90702 * 179.64870 * 24 23 22 43 43 H 1.08001 * 120.13165 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4425 0.0006 5 6 4.1892 1.3985 1.1860 6 1 3.6579 1.2248 2.1101 7 6 5.5657 1.5774 1.1998 8 7 6.1518 2.2490 0.2316 9 14 6.5861 0.8646 2.5927 10 1 7.0179 -0.5109 2.2364 11 1 7.7817 1.7164 2.8165 12 1 5.7698 0.8215 3.8325 13 6 4.2379 1.4897 -1.2670 14 6 4.4892 2.9256 -1.6489 15 8 4.0944 3.8216 -0.9329 16 7 5.1526 3.2143 -2.7860 17 6 5.6420 2.1467 -3.6710 18 6 7.0270 2.5010 -4.1487 19 8 7.8113 1.6169 -4.4211 20 7 7.4037 3.7873 -4.2774 21 6 6.5352 4.8255 -3.9234 22 6 6.7936 6.1300 -4.3133 23 6 5.9274 7.1428 -3.9448 24 6 4.8036 6.8613 -3.1893 25 6 4.5367 5.5617 -2.7972 26 6 5.3983 4.5437 -3.1642 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0278 0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8899 33 1 1.6766 1.9564 -0.8899 34 1 7.1137 2.3743 0.2414 35 1 3.6492 1.0044 -2.0455 36 1 5.1903 0.9714 -1.1554 37 1 5.6750 1.2052 -3.1228 38 1 4.9739 2.0472 -4.5264 39 1 8.2870 3.9965 -4.6194 40 1 7.6693 6.3551 -4.9038 41 1 6.1290 8.1592 -4.2492 42 1 4.1351 7.6589 -2.9008 43 1 3.6591 5.3428 -2.2069 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000122981770.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:17:48 Heat of formation + Delta-G solvation = -22.333269 kcal Electronic energy + Delta-G solvation = -27570.011222 eV Core-core repulsion = 23808.582716 eV Total energy + Delta-G solvation = -3761.428507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.33010 -40.26637 -39.45939 -37.60901 -36.57619 -35.68866 -34.66313 -32.52092 -31.53353 -30.58699 -29.26137 -28.01360 -27.31387 -24.74948 -23.82538 -23.59959 -21.99567 -21.40874 -20.13461 -19.33441 -18.76857 -18.44146 -17.92014 -17.34441 -16.94942 -16.40291 -16.08955 -15.95003 -15.60762 -15.46376 -15.23193 -14.85889 -14.70511 -14.58954 -14.47372 -14.04868 -13.79601 -13.58810 -13.32664 -13.15671 -12.71425 -12.61018 -12.58473 -12.40802 -12.23609 -12.07299 -12.04014 -11.82415 -11.77919 -11.66782 -11.35493 -10.87136 -10.66013 -10.26717 -9.38612 -8.92031 -8.59666 -7.93865 -5.18493 0.19699 0.45043 1.31802 1.43757 1.46579 1.53348 1.79346 2.03134 2.28329 2.52152 2.91516 3.17830 3.23995 3.54044 3.76959 4.00908 4.08032 4.24108 4.26311 4.29241 4.41925 4.42899 4.51407 4.58010 4.62764 4.73341 4.79188 4.94492 4.95571 5.12161 5.14114 5.24642 5.28593 5.34893 5.45419 5.60594 5.61375 5.65413 5.66915 5.72602 5.88087 6.18149 6.21637 6.42568 6.84427 7.07308 7.61448 7.85868 8.20851 9.12609 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.011723 B = 0.005057 C = 0.004514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.908895 B = 5535.037853 C = 6201.668547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.130 4.130 3 C 0.150 3.850 4 N -0.589 5.589 5 C -0.246 4.246 6 H 0.074 0.926 7 C -0.049 4.049 8 N -0.917 5.917 9 Si 0.958 3.042 10 H -0.284 1.284 11 H -0.308 1.308 12 H -0.274 1.274 13 C 0.166 3.834 14 C 0.537 3.463 15 O -0.543 6.543 16 N -0.572 5.572 17 C 0.097 3.903 18 C 0.515 3.485 19 O -0.557 6.557 20 N -0.645 5.645 21 C 0.101 3.899 22 C -0.124 4.124 23 C -0.108 4.108 24 C -0.120 4.120 25 C -0.122 4.122 26 C 0.110 3.890 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.057 0.943 31 H 0.046 0.954 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.241 0.759 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.123 0.877 38 H 0.135 0.865 39 H 0.420 0.580 40 H 0.163 0.837 41 H 0.165 0.835 42 H 0.145 0.855 43 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.831 4.958 -12.813 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.170 4.170 3 C 0.024 3.976 4 N -0.308 5.308 5 C -0.376 4.376 6 H 0.092 0.908 7 C -0.243 4.243 8 N -0.564 5.564 9 Si 0.788 3.212 10 H -0.211 1.211 11 H -0.235 1.235 12 H -0.199 1.199 13 C 0.035 3.965 14 C 0.327 3.673 15 O -0.418 6.418 16 N -0.302 5.302 17 C -0.028 4.028 18 C 0.303 3.697 19 O -0.434 6.434 20 N -0.290 5.290 21 C 0.004 3.996 22 C -0.145 4.145 23 C -0.128 4.128 24 C -0.139 4.139 25 C -0.144 4.144 26 C 0.014 3.986 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.141 0.859 38 H 0.153 0.847 39 H 0.260 0.740 40 H 0.180 0.820 41 H 0.182 0.818 42 H 0.163 0.837 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -3.701 4.759 -12.390 13.779 hybrid contribution 1.389 -0.136 1.079 1.764 sum -2.313 4.622 -11.312 12.437 Atomic orbital electron populations 1.21664 0.94353 1.02030 1.01768 1.21932 0.96158 0.97624 1.01295 1.20957 0.82208 0.95441 0.98954 1.44177 1.01326 1.83619 1.01672 1.19438 0.89969 1.40839 0.87336 0.90800 1.25269 0.98211 1.00405 1.00451 1.70014 1.08595 1.41313 1.36527 0.85386 0.77992 0.77933 0.79883 1.21108 1.23545 1.19922 1.20782 0.97971 0.90142 0.87576 1.22589 0.74063 0.94310 0.76310 1.90473 1.52000 1.49739 1.49561 1.46200 1.56910 1.03815 1.23242 1.22075 0.91495 0.92647 0.96567 1.21118 0.90596 0.82161 0.75831 1.90757 1.54147 1.47306 1.51234 1.43337 1.18204 1.04523 1.62911 1.17802 0.90422 0.89687 1.01702 1.20954 1.02304 0.88947 1.02284 1.21286 0.93466 1.00249 0.97752 1.21343 0.98971 0.95164 0.98451 1.21055 0.99471 0.93088 1.00741 1.17988 0.95348 0.85999 0.99293 0.93107 0.92238 0.91682 0.92378 0.93532 0.94994 0.93875 0.94974 0.90469 0.89647 0.85911 0.84715 0.74000 0.81954 0.81780 0.83707 0.86573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.48 9.91 71.98 0.71 -2.76 16 2 C -0.13 -4.22 6.25 30.60 0.19 -4.03 16 3 C 0.15 5.98 5.67 86.38 0.49 6.47 16 4 N -0.59 -28.28 2.02 -706.34 -1.43 -29.71 16 5 C -0.25 -13.27 9.70 84.03 0.82 -12.46 16 6 H 0.07 3.97 7.94 -2.91 -0.02 3.95 16 7 C -0.05 -2.68 4.90 84.86 0.42 -2.27 16 8 N -0.92 -52.56 8.96 21.65 0.19 -52.36 16 9 Si 0.96 45.83 29.62 68.60 2.03 47.86 16 10 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 11 H -0.31 -15.30 7.11 99.48 0.71 -14.59 16 12 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 13 C 0.17 7.38 3.86 85.63 0.33 7.71 16 14 C 0.54 24.75 5.64 87.66 0.49 25.24 16 15 O -0.54 -29.31 13.65 -3.10 -0.04 -29.35 16 16 N -0.57 -22.06 3.01 -633.32 -1.91 -23.96 16 17 C 0.10 3.07 6.38 85.54 0.55 3.62 16 18 C 0.52 17.02 7.90 87.69 0.69 17.71 16 19 O -0.56 -21.10 17.91 -3.06 -0.05 -21.16 16 20 N -0.64 -18.26 5.37 -303.32 -1.63 -19.89 16 21 C 0.10 2.96 6.58 38.26 0.25 3.21 16 22 C -0.12 -2.69 9.93 22.36 0.22 -2.47 16 23 C -0.11 -2.22 10.03 22.29 0.22 -1.99 16 24 C -0.12 -3.12 10.04 22.31 0.22 -2.90 16 25 C -0.12 -4.31 8.83 22.32 0.20 -4.11 16 26 C 0.11 3.95 6.10 38.12 0.23 4.18 16 27 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 32 H 0.03 1.34 8.06 -2.39 -0.02 1.32 16 33 H 0.04 1.64 8.06 -2.39 -0.02 1.62 16 34 H 0.24 14.04 8.31 -92.70 -0.77 13.27 16 35 H 0.08 2.80 8.06 -2.39 -0.02 2.78 16 36 H 0.09 4.20 5.70 -2.39 -0.01 4.18 16 37 H 0.12 3.99 6.24 -2.39 -0.01 3.97 16 38 H 0.14 3.16 8.14 -2.39 -0.02 3.15 16 39 H 0.42 9.62 8.82 -92.70 -0.82 8.80 16 40 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.16 2.04 8.06 -2.91 -0.02 2.02 16 42 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 43 H 0.12 4.75 6.11 -2.91 -0.02 4.73 16 Total: -1.00 -73.61 353.93 3.42 -70.19 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: 0.22 Total: 23.24 kcal Atomic # 6 Polarization: 29.10 SS G_CDS: 6.04 Total: 35.14 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -4.77 Total: -125.92 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -0.10 Total: -50.51 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -73.61 3.42 -70.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000122981770.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.854 kcal (2) G-P(sol) polarization free energy of solvation -73.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds