Wall clock time and date at job start Tue Mar 31 2020 11:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46934 * 2 1 4 4 N 1.46490 * 109.47085 * 180.02562 * 3 2 1 5 5 C 1.36941 * 120.00258 * 275.32716 * 4 3 2 6 6 H 1.08002 * 119.99706 * 37.54381 * 5 4 3 7 7 C 1.38814 * 120.00291 * 217.54336 * 5 4 3 8 8 N 1.31614 * 119.99845 * 21.57196 * 7 5 4 9 9 Si 1.86799 * 119.99721 * 201.57657 * 7 5 4 10 10 H 1.48503 * 109.47408 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47157 * 119.99880 * 9 7 5 12 12 H 1.48497 * 109.47010 * 240.00014 * 9 7 5 13 13 C 1.46497 * 120.00340 * 95.33185 * 4 3 2 14 14 C 1.50701 * 109.47254 * 270.00121 * 13 4 3 15 15 N 1.30975 * 126.43486 * 89.99523 * 14 13 4 16 16 C 1.35236 * 105.57758 * 180.02562 * 15 14 13 17 17 C 1.48339 * 126.41903 * 179.97438 * 16 15 14 18 18 C 1.39403 * 120.06341 * 359.72517 * 17 16 15 19 19 C 1.37864 * 119.93653 * 179.73954 * 18 17 16 20 20 C 1.38869 * 120.06557 * 0.55923 * 19 18 17 21 21 O 1.35828 * 119.93578 * 179.71797 * 20 19 18 22 22 C 1.42891 * 117.00472 * 359.97438 * 21 20 19 23 23 C 1.38866 * 120.12257 * 359.69259 * 20 19 18 24 24 C 1.37869 * 120.06835 * 0.02562 * 23 20 19 25 25 N 1.30807 * 107.16351 * 0.02562 * 16 15 14 26 26 O 1.21286 * 110.08705 * 359.97438 * 25 16 15 27 27 H 1.09008 * 109.46601 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46757 * 299.99679 * 1 2 3 29 29 H 1.08998 * 109.47225 * 59.99945 * 1 2 3 30 30 H 1.08994 * 109.47257 * 240.00340 * 2 1 3 31 31 H 1.08998 * 109.47225 * 120.00055 * 2 1 3 32 32 H 1.09000 * 109.47107 * 59.99797 * 3 2 1 33 33 H 1.09003 * 109.46790 * 300.00230 * 3 2 1 34 34 H 0.96997 * 119.99495 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47696 * 149.99710 * 13 4 3 36 36 H 1.08999 * 109.46907 * 29.99688 * 13 4 3 37 37 H 1.08006 * 120.02988 * 0.02562 * 18 17 16 38 38 H 1.08006 * 119.96912 * 180.25258 * 19 18 17 39 39 H 1.08994 * 109.47579 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.46995 * 300.00273 * 22 21 20 41 41 H 1.09000 * 109.47524 * 59.99475 * 22 21 20 42 42 H 1.08000 * 119.96344 * 179.97438 * 23 20 19 43 43 H 1.08000 * 120.03310 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1902 1.3324 1.1799 6 1 3.8183 0.6869 1.9618 7 6 5.3628 2.0502 1.3715 8 7 5.6021 3.1245 0.6497 9 14 6.6010 1.4912 2.6535 10 1 6.0991 0.2656 3.3253 11 1 7.8988 1.1984 1.9936 12 1 6.7894 2.5656 3.6612 13 6 4.2369 1.5607 -1.2641 14 6 4.4879 0.1866 -1.8296 15 7 3.7047 -0.4737 -2.6457 16 6 4.3320 -1.6487 -2.8799 17 6 3.8448 -2.7496 -3.7465 18 6 2.6249 -2.6283 -4.4103 19 6 2.1772 -3.6509 -5.2193 20 6 2.9346 -4.8058 -5.3642 21 8 2.4882 -5.8140 -6.1574 22 6 1.2326 -5.6182 -6.8107 23 6 4.1476 -4.9316 -4.7001 24 6 4.6032 -3.9099 -3.8943 25 7 5.4483 -1.6329 -2.1983 26 8 5.5513 -0.5876 -1.5918 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 6.4213 3.6262 0.7839 35 1 5.1894 2.0602 -1.0869 36 1 3.6475 2.1430 -1.9724 37 1 2.0334 -1.7321 -4.2945 38 1 1.2341 -3.5558 -5.7371 39 1 0.9942 -6.4965 -7.4106 40 1 0.4538 -5.4670 -6.0632 41 1 1.2915 -4.7419 -7.4563 42 1 4.7344 -5.8311 -4.8143 43 1 5.5469 -4.0082 -3.3784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127966802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:49 Heat of formation + Delta-G solvation = 69.234240 kcal Electronic energy + Delta-G solvation = -26239.249481 eV Core-core repulsion = 22481.791639 eV Total energy + Delta-G solvation = -3757.457842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.66696 -40.25021 -37.73186 -36.53915 -34.86888 -33.16512 -32.29224 -31.30954 -30.73722 -29.77431 -27.61474 -26.93033 -25.69092 -23.99416 -23.12213 -22.35817 -21.88260 -20.55154 -20.16262 -18.37213 -17.47147 -17.16242 -16.65343 -16.24936 -15.98384 -15.50547 -15.01992 -14.46774 -14.41578 -14.13703 -13.93152 -13.73027 -13.40130 -13.30181 -13.03965 -12.67883 -12.51716 -12.19630 -11.77025 -11.74045 -11.65570 -11.51725 -11.12640 -11.02052 -10.88368 -10.80735 -10.76181 -10.59984 -10.35685 -10.30110 -10.10790 -9.89497 -9.33176 -9.15834 -8.68184 -8.07344 -6.90846 -6.05908 -3.63110 0.91739 1.23982 2.06374 2.93793 3.01465 3.29741 3.39466 3.42763 3.75961 3.82744 4.05935 4.35199 4.53742 4.66537 4.76442 4.86370 4.93738 5.13363 5.15569 5.24275 5.29695 5.34999 5.52694 5.63929 5.66730 5.73851 5.91927 6.00167 6.10939 6.17239 6.20890 6.31149 6.42690 6.44415 6.51036 6.53266 6.58308 6.64046 6.72910 6.90502 7.10143 7.13981 7.15785 7.66684 8.25670 8.89733 8.92043 9.52245 10.07604 10.96811 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.003365 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.175184 B = 8318.334197 C = 9270.920216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.148 4.148 3 C 0.148 3.852 4 N -0.561 5.561 5 C -0.273 4.273 6 H 0.066 0.934 7 C 0.023 3.977 8 N -0.879 5.879 9 Si 0.900 3.100 10 H -0.274 1.274 11 H -0.282 1.282 12 H -0.287 1.287 13 C 0.217 3.783 14 C 0.205 3.795 15 N -0.504 5.504 16 C 0.195 3.805 17 C -0.041 4.041 18 C -0.037 4.037 19 C -0.211 4.211 20 C 0.134 3.866 21 O -0.317 6.317 22 C 0.026 3.974 23 C -0.154 4.154 24 C -0.049 4.049 25 N -0.400 5.400 26 O 0.076 5.924 27 H 0.042 0.958 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.042 0.958 34 H 0.261 0.739 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.139 0.861 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.135 0.865 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.574 -11.082 -12.072 18.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.188 4.188 3 C 0.023 3.977 4 N -0.279 5.279 5 C -0.402 4.402 6 H 0.084 0.916 7 C -0.179 4.179 8 N -0.520 5.520 9 Si 0.729 3.271 10 H -0.199 1.199 11 H -0.208 1.208 12 H -0.213 1.213 13 C 0.086 3.914 14 C -0.017 4.017 15 N -0.239 5.239 16 C -0.074 4.074 17 C -0.043 4.043 18 C -0.057 4.057 19 C -0.230 4.230 20 C 0.088 3.912 21 O -0.230 6.230 22 C -0.069 4.069 23 C -0.173 4.173 24 C -0.069 4.069 25 N -0.111 5.111 26 O 0.020 5.980 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.060 0.940 34 H 0.071 0.929 35 H 0.144 0.856 36 H 0.098 0.902 37 H 0.157 0.843 38 H 0.151 0.849 39 H 0.117 0.883 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.153 0.847 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -7.142 -11.789 -12.297 18.472 hybrid contribution 0.442 -0.163 0.692 0.837 sum -6.701 -11.951 -11.605 17.956 Atomic orbital electron populations 1.21680 0.97071 1.00375 1.01019 1.22117 0.94158 1.00725 1.01797 1.21031 0.83738 0.93384 0.99561 1.43801 1.00145 1.82735 1.01259 1.19100 1.06241 1.21518 0.93353 0.91596 1.25224 1.00438 0.94136 0.98142 1.69942 1.25801 1.14132 1.42106 0.86277 0.81413 0.78563 0.80894 1.19860 1.20805 1.21319 1.20043 1.02551 0.81824 0.87026 1.31789 0.80843 0.99824 0.89252 1.71967 1.29464 1.03914 1.18511 1.23733 0.90083 0.94282 0.99347 1.17312 0.96098 0.91640 0.99210 1.21019 0.93912 0.98250 0.92517 1.21155 1.02051 0.94605 1.05201 1.19163 0.93615 0.87244 0.91138 1.86043 1.37967 1.39933 1.59106 1.23076 0.83759 1.03261 0.96805 1.20285 0.95528 1.00830 1.00657 1.21009 0.99151 0.91075 0.95647 1.74767 1.20590 1.04465 1.11266 1.85293 1.41176 1.19707 1.51838 0.93926 0.93243 0.93267 0.92176 0.92831 0.92869 0.93979 0.92881 0.85644 0.90223 0.84322 0.84946 0.88252 0.92475 0.92482 0.84700 0.84511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.15 9.91 37.16 0.37 -1.78 16 2 C -0.15 -2.76 6.23 -26.73 -0.17 -2.92 16 3 C 0.15 2.98 5.72 -4.04 -0.02 2.95 16 4 N -0.56 -13.02 2.42 -174.61 -0.42 -13.44 16 5 C -0.27 -6.99 9.45 -15.06 -0.14 -7.14 16 6 H 0.07 1.73 7.92 -52.49 -0.42 1.31 16 7 C 0.02 0.58 4.95 -17.43 -0.09 0.49 16 8 N -0.88 -23.14 11.48 55.49 0.64 -22.50 16 9 Si 0.90 20.69 29.61 -169.99 -5.03 15.66 16 10 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 13 C 0.22 4.74 5.95 -5.19 -0.03 4.71 16 14 C 0.21 4.40 7.93 -12.98 -0.10 4.29 16 15 N -0.50 -10.18 10.33 -9.88 -0.10 -10.28 16 16 C 0.20 3.82 7.80 -156.10 -1.22 2.61 16 17 C -0.04 -0.66 5.88 -104.87 -0.62 -1.28 16 18 C -0.04 -0.52 9.69 -39.28 -0.38 -0.90 16 19 C -0.21 -2.47 9.02 -39.48 -0.36 -2.82 16 20 C 0.13 1.62 6.69 -39.12 -0.26 1.35 16 21 O -0.32 -3.39 10.49 -19.20 -0.20 -3.59 16 22 C 0.03 0.17 9.81 101.05 0.99 1.16 16 23 C -0.15 -1.91 9.97 -39.48 -0.39 -2.30 16 24 C -0.05 -0.70 9.69 -39.28 -0.38 -1.08 16 25 N -0.40 -8.40 11.85 30.97 0.37 -8.04 16 26 O 0.08 1.70 11.29 18.05 0.20 1.91 16 27 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 28 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 1.20 7.03 -51.93 -0.37 0.83 16 31 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.05 1.08 8.08 -51.93 -0.42 0.66 16 33 H 0.04 0.79 7.83 -51.93 -0.41 0.38 16 34 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 35 H 0.13 3.01 5.52 -51.93 -0.29 2.72 16 36 H 0.08 1.59 7.86 -51.93 -0.41 1.18 16 37 H 0.14 1.93 7.87 -52.48 -0.41 1.51 16 38 H 0.13 1.18 6.28 -52.48 -0.33 0.85 16 39 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.34 7.65 -51.93 -0.40 -0.06 16 41 H 0.06 0.33 7.65 -51.93 -0.40 -0.07 16 42 H 0.14 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.14 1.91 7.86 -52.49 -0.41 1.50 16 LS Contribution 366.12 15.07 5.52 5.52 Total: -1.00 -28.42 366.12 -7.76 -36.18 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -5.92 Total: 1.23 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -2.80 Total: -2.65 kcal Atomic # 7 Polarization: -54.74 SS G_CDS: 0.48 Total: -54.26 kcal Atomic # 8 Polarization: -1.69 SS G_CDS: 0.00 Total: -1.68 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.42 -7.76 -36.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127966802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.413 kcal (2) G-P(sol) polarization free energy of solvation -28.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds