Wall clock time and date at job start Tue Mar 31 2020 11:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53007 * 109.46934 * 2 1 4 4 N 1.46490 * 109.47085 * 180.02562 * 3 2 1 5 5 C 1.36941 * 120.00258 * 275.32716 * 4 3 2 6 6 H 1.08002 * 119.99706 * 37.54381 * 5 4 3 7 7 C 1.38814 * 120.00291 * 217.54336 * 5 4 3 8 8 N 1.31614 * 119.99845 * 21.57196 * 7 5 4 9 9 Si 1.86799 * 119.99721 * 201.57657 * 7 5 4 10 10 H 1.48503 * 109.47408 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47157 * 119.99880 * 9 7 5 12 12 H 1.48497 * 109.47010 * 240.00014 * 9 7 5 13 13 C 1.46497 * 120.00340 * 95.33185 * 4 3 2 14 14 C 1.50701 * 109.47254 * 270.00121 * 13 4 3 15 15 N 1.30975 * 126.43486 * 89.99523 * 14 13 4 16 16 C 1.35236 * 105.57758 * 180.02562 * 15 14 13 17 17 C 1.48339 * 126.41903 * 179.97438 * 16 15 14 18 18 C 1.39403 * 120.06341 * 359.72517 * 17 16 15 19 19 C 1.37864 * 119.93653 * 179.73954 * 18 17 16 20 20 C 1.38869 * 120.06557 * 0.55923 * 19 18 17 21 21 O 1.35828 * 119.93578 * 179.71797 * 20 19 18 22 22 C 1.42891 * 117.00472 * 359.97438 * 21 20 19 23 23 C 1.38866 * 120.12257 * 359.69259 * 20 19 18 24 24 C 1.37869 * 120.06835 * 0.02562 * 23 20 19 25 25 N 1.30807 * 107.16351 * 0.02562 * 16 15 14 26 26 O 1.21286 * 110.08705 * 359.97438 * 25 16 15 27 27 H 1.09008 * 109.46601 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.46757 * 299.99679 * 1 2 3 29 29 H 1.08998 * 109.47225 * 59.99945 * 1 2 3 30 30 H 1.08994 * 109.47257 * 240.00340 * 2 1 3 31 31 H 1.08998 * 109.47225 * 120.00055 * 2 1 3 32 32 H 1.09000 * 109.47107 * 59.99797 * 3 2 1 33 33 H 1.09003 * 109.46790 * 300.00230 * 3 2 1 34 34 H 0.96997 * 119.99495 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47696 * 149.99710 * 13 4 3 36 36 H 1.08999 * 109.46907 * 29.99688 * 13 4 3 37 37 H 1.08006 * 120.02988 * 0.02562 * 18 17 16 38 38 H 1.08006 * 119.96912 * 180.25258 * 19 18 17 39 39 H 1.08994 * 109.47579 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.46995 * 300.00273 * 22 21 20 41 41 H 1.09000 * 109.47524 * 59.99475 * 22 21 20 42 42 H 1.08000 * 119.96344 * 179.97438 * 23 20 19 43 43 H 1.08000 * 120.03310 * 180.02562 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1902 1.3324 1.1799 6 1 3.8183 0.6869 1.9618 7 6 5.3628 2.0502 1.3715 8 7 5.6021 3.1245 0.6497 9 14 6.6010 1.4912 2.6535 10 1 6.0991 0.2656 3.3253 11 1 7.8988 1.1984 1.9936 12 1 6.7894 2.5656 3.6612 13 6 4.2369 1.5607 -1.2641 14 6 4.4879 0.1866 -1.8296 15 7 3.7047 -0.4737 -2.6457 16 6 4.3320 -1.6487 -2.8799 17 6 3.8448 -2.7496 -3.7465 18 6 2.6249 -2.6283 -4.4103 19 6 2.1772 -3.6509 -5.2193 20 6 2.9346 -4.8058 -5.3642 21 8 2.4882 -5.8140 -6.1574 22 6 1.2326 -5.6182 -6.8107 23 6 4.1476 -4.9316 -4.7001 24 6 4.6032 -3.9099 -3.8943 25 7 5.4483 -1.6329 -2.1983 26 8 5.5513 -0.5876 -1.5918 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6766 1.9564 -0.8900 34 1 6.4213 3.6262 0.7839 35 1 5.1894 2.0602 -1.0869 36 1 3.6475 2.1430 -1.9724 37 1 2.0334 -1.7321 -4.2945 38 1 1.2341 -3.5558 -5.7371 39 1 0.9942 -6.4965 -7.4106 40 1 0.4538 -5.4670 -6.0632 41 1 1.2915 -4.7419 -7.4563 42 1 4.7344 -5.8311 -4.8143 43 1 5.5469 -4.0082 -3.3784 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127966802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:10:49 Heat of formation + Delta-G solvation = 53.803348 kcal Electronic energy + Delta-G solvation = -26239.918614 eV Core-core repulsion = 22481.791639 eV Total energy + Delta-G solvation = -3758.126975 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.28157 -41.16148 -38.71071 -38.27661 -36.40421 -34.76993 -33.93804 -32.44145 -32.26342 -30.95704 -28.62747 -28.28358 -27.41044 -25.34566 -24.56527 -23.61107 -23.25653 -21.98916 -21.69783 -19.33276 -19.15880 -18.71858 -18.29530 -17.23630 -16.87145 -16.76907 -16.69272 -16.04669 -15.78187 -15.54287 -15.42409 -14.95314 -14.73253 -14.44238 -14.13217 -14.06034 -13.79101 -13.37407 -13.20463 -13.17665 -12.86814 -12.83514 -12.72225 -12.60336 -12.48314 -12.27673 -12.11127 -12.05707 -11.95490 -11.88525 -11.75331 -11.40936 -10.90861 -10.60758 -10.16235 -9.17241 -8.78551 -8.00329 -5.61101 -0.28569 0.24143 0.48541 1.43159 1.50371 1.52194 1.57742 2.10803 2.25722 2.45197 2.64935 2.71407 3.10084 3.22491 3.57948 3.74728 3.81851 4.12919 4.17852 4.23189 4.33216 4.38388 4.42339 4.45216 4.51406 4.56419 4.65466 4.76029 4.79489 4.81804 4.93526 4.95553 4.98453 5.11498 5.15647 5.22561 5.23908 5.34765 5.39485 5.43463 5.53939 5.58657 5.64281 6.31683 6.34768 6.99254 7.27796 7.63595 8.16663 8.99785 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.017682 B = 0.003365 C = 0.003019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.175184 B = 8318.334197 C = 9270.920216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.137 4.137 3 C 0.147 3.853 4 N -0.575 5.575 5 C -0.282 4.282 6 H 0.053 0.947 7 C -0.013 4.013 8 N -0.899 5.899 9 Si 0.949 3.051 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.282 1.282 13 C 0.224 3.776 14 C 0.201 3.799 15 N -0.499 5.499 16 C 0.206 3.794 17 C -0.079 4.079 18 C -0.037 4.037 19 C -0.203 4.203 20 C 0.145 3.855 21 O -0.325 6.325 22 C 0.013 3.987 23 C -0.156 4.156 24 C -0.051 4.051 25 N -0.417 5.417 26 O 0.047 5.953 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.045 0.955 31 H 0.029 0.971 32 H 0.048 0.952 33 H 0.058 0.942 34 H 0.262 0.738 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.138 0.862 38 H 0.165 0.835 39 H 0.123 0.877 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.155 0.845 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.522 -12.724 -13.785 21.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.177 4.177 3 C 0.023 3.977 4 N -0.294 5.294 5 C -0.412 4.412 6 H 0.071 0.929 7 C -0.213 4.213 8 N -0.541 5.541 9 Si 0.777 3.223 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.208 1.208 13 C 0.093 3.907 14 C -0.022 4.022 15 N -0.234 5.234 16 C -0.064 4.064 17 C -0.081 4.081 18 C -0.057 4.057 19 C -0.221 4.221 20 C 0.098 3.902 21 O -0.238 6.238 22 C -0.081 4.081 23 C -0.174 4.174 24 C -0.071 4.071 25 N -0.133 5.133 26 O -0.003 6.003 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.063 0.937 31 H 0.048 0.952 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.156 0.844 38 H 0.183 0.817 39 H 0.141 0.859 40 H 0.086 0.914 41 H 0.087 0.913 42 H 0.173 0.827 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.102 -13.415 -14.000 21.420 hybrid contribution 0.922 0.175 1.035 1.397 sum -8.180 -13.239 -12.965 20.256 Atomic orbital electron populations 1.21609 0.93857 1.01594 1.02215 1.21963 0.96875 0.99039 0.99840 1.21136 0.82109 0.94464 1.00029 1.43947 1.01391 1.83116 1.00950 1.19136 1.06865 1.21103 0.94094 0.92903 1.25728 1.01506 0.94285 0.99758 1.70004 1.26111 1.14762 1.43232 0.85522 0.79477 0.78063 0.79260 1.20100 1.21171 1.20773 1.19851 1.01737 0.82043 0.87077 1.31600 0.81080 0.99739 0.89751 1.71959 1.29073 1.04200 1.18165 1.24368 0.89148 0.94543 0.98335 1.17480 0.97972 0.91676 1.00982 1.21074 0.93055 0.98988 0.92623 1.21414 1.03009 0.93501 1.04221 1.19291 0.93159 0.87462 0.90298 1.86057 1.39783 1.39347 1.58643 1.23449 0.82203 1.05127 0.97295 1.20481 0.96105 1.00860 0.99984 1.21010 0.98942 0.91085 0.96084 1.74754 1.21785 1.04201 1.12540 1.85258 1.41869 1.20394 1.52804 0.92711 0.92302 0.91806 0.93668 0.95189 0.93377 0.92339 0.92897 0.87795 0.88453 0.84442 0.81740 0.85930 0.91419 0.91300 0.82701 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 9.91 71.98 0.71 -3.05 16 2 C -0.14 -5.07 6.23 30.60 0.19 -4.88 16 3 C 0.15 5.89 5.72 86.38 0.49 6.38 16 4 N -0.57 -27.16 2.42 -706.35 -1.71 -28.86 16 5 C -0.28 -14.82 9.45 84.03 0.79 -14.03 16 6 H 0.05 2.86 7.92 -2.91 -0.02 2.84 16 7 C -0.01 -0.67 4.95 84.86 0.42 -0.25 16 8 N -0.90 -48.25 11.48 21.65 0.25 -48.00 16 9 Si 0.95 43.33 29.61 68.60 2.03 45.36 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 11 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 C 0.22 10.01 5.95 85.63 0.51 10.51 16 14 C 0.20 8.83 7.93 88.36 0.70 9.53 16 15 N -0.50 -20.34 10.33 -302.47 -3.12 -23.47 16 16 C 0.21 8.17 7.80 137.25 1.07 9.24 16 17 C -0.08 -2.53 5.88 -20.03 -0.12 -2.65 16 18 C -0.04 -0.99 9.69 22.46 0.22 -0.77 16 19 C -0.20 -4.11 9.02 22.33 0.20 -3.91 16 20 C 0.14 3.05 6.69 22.57 0.15 3.20 16 21 O -0.33 -5.77 10.49 -91.62 -0.96 -6.73 16 22 C 0.01 0.12 9.81 113.37 1.11 1.23 16 23 C -0.16 -3.54 9.97 22.33 0.22 -3.32 16 24 C -0.05 -1.43 9.69 22.46 0.22 -1.21 16 25 N -0.42 -18.08 11.85 -59.08 -0.70 -18.78 16 26 O 0.05 2.20 11.29 74.65 0.84 3.05 16 27 H 0.05 1.39 8.14 -2.38 -0.02 1.38 16 28 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.04 1.79 7.03 -2.39 -0.02 1.77 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 33 H 0.06 2.13 7.83 -2.39 -0.02 2.11 16 34 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 35 H 0.10 5.16 5.52 -2.39 -0.01 5.15 16 36 H 0.10 3.91 7.86 -2.39 -0.02 3.89 16 37 H 0.14 3.62 7.87 -2.91 -0.02 3.60 16 38 H 0.17 2.21 6.28 -2.91 -0.02 2.19 16 39 H 0.12 0.58 8.14 -2.39 -0.02 0.57 16 40 H 0.07 0.51 7.65 -2.39 -0.02 0.50 16 41 H 0.07 0.51 7.65 -2.39 -0.02 0.49 16 42 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 43 H 0.13 3.72 7.86 -2.91 -0.02 3.70 16 Total: -1.00 -62.16 366.12 4.55 -57.61 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 1.02 Total: 13.80 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 6.90 Total: 6.03 kcal Atomic # 7 Polarization: -113.83 SS G_CDS: -5.28 Total: -119.11 kcal Atomic # 8 Polarization: -3.57 SS G_CDS: -0.12 Total: -3.69 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -62.16 4.55 -57.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127966802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.418 kcal (2) G-P(sol) polarization free energy of solvation -62.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds