Wall clock time and date at job start Tue Mar 31 2020 11:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47232 * 2 1 4 4 H 1.08997 * 109.47011 * 54.99849 * 3 2 1 5 5 C 1.50703 * 109.47537 * 175.00273 * 3 2 1 6 6 H 1.07996 * 120.00545 * 119.99851 * 5 3 2 7 7 C 1.37875 * 119.99661 * 299.99967 * 5 3 2 8 8 N 1.31518 * 120.00025 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00023 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47319 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47254 * 120.00260 * 9 7 5 12 12 H 1.48500 * 109.47034 * 239.99889 * 9 7 5 13 13 N 1.46504 * 109.47279 * 295.00185 * 3 2 1 14 14 C 1.34771 * 120.00087 * 84.99493 * 13 3 2 15 15 O 1.21591 * 120.00175 * 0.02562 * 14 13 3 16 16 N 1.34774 * 119.99904 * 180.02562 * 14 13 3 17 17 C 1.40119 * 120.00038 * 185.31092 * 16 14 13 18 18 C 1.38876 * 120.00016 * 213.20926 * 17 16 14 19 19 C 1.38040 * 120.01166 * 180.02562 * 18 17 16 20 20 C 1.38867 * 119.99345 * 0.02562 * 19 18 17 21 21 C 1.38730 * 119.87773 * 0.22677 * 20 19 18 22 22 C 1.38041 * 120.07023 * 0.03254 * 21 20 19 23 23 C 1.50676 * 119.80353 * 180.23743 * 21 20 19 24 24 C 1.52901 * 109.53300 * 325.77928 * 23 21 20 25 25 C 1.50500 * 109.90227 * 48.66336 * 24 23 21 26 26 O 1.21297 * 119.61798 * 144.79046 * 25 24 23 27 27 N 1.34557 * 120.76347 * 324.76282 * 25 24 23 28 28 H 1.08994 * 109.47208 * 299.99525 * 1 2 3 29 29 H 1.08997 * 109.47259 * 60.00561 * 1 2 3 30 30 H 1.09002 * 109.46984 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47390 * 239.99847 * 2 1 3 32 32 H 1.09004 * 109.47554 * 120.00275 * 2 1 3 33 33 H 0.97010 * 120.00027 * 179.97438 * 8 7 5 34 34 H 0.97003 * 119.99862 * 265.00303 * 13 3 2 35 35 H 0.96999 * 120.00268 * 5.31764 * 16 14 13 36 36 H 1.07991 * 119.99702 * 359.97438 * 18 17 16 37 37 H 1.08004 * 120.00407 * 179.97438 * 19 18 17 38 38 H 1.08003 * 120.01067 * 180.19539 * 22 21 20 39 39 H 1.08998 * 109.45832 * 205.75610 * 23 21 20 40 40 H 1.09001 * 109.45113 * 85.78966 * 23 21 20 41 41 H 1.08994 * 109.39622 * 288.53092 * 24 23 21 42 42 H 1.08998 * 109.40057 * 168.79579 * 24 23 21 43 43 H 0.96999 * 119.78305 * 180.77722 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4061 0.3375 2.1733 9 14 6.0050 0.8801 1.3811 10 1 6.5989 1.5442 0.1930 11 1 6.4000 1.6157 2.6091 12 1 6.4961 -0.5190 1.4626 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3413 2.6325 -0.4318 16 7 0.0784 3.2665 -2.5187 17 6 -1.1409 3.9518 -2.6026 18 6 -1.8447 3.9728 -3.7997 19 6 -3.0456 4.6484 -3.8827 20 6 -3.5498 5.3075 -2.7693 21 6 -2.8422 5.2893 -1.5762 22 6 -1.6387 4.6179 -1.4959 23 6 -3.3934 6.0005 -0.3676 24 6 -4.1416 7.2579 -0.8115 25 6 -5.0899 6.9216 -1.9307 26 8 -6.1568 7.4938 -2.0048 27 7 -4.7676 5.9938 -2.8504 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8293 -0.0610 2.9499 34 1 2.2719 2.1231 -1.9978 35 1 0.6656 3.2254 -3.2897 36 1 -1.4520 3.4613 -4.6659 37 1 -3.5927 4.6650 -4.8139 38 1 -1.0901 4.6017 -0.5657 39 1 -2.5738 6.2802 0.2943 40 1 -4.0783 5.3384 0.1622 41 1 -3.4247 8.0031 -1.1560 42 1 -4.7040 7.6608 0.0308 43 1 -5.3847 5.7963 -3.5723 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157031084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:19 Heat of formation + Delta-G solvation = -47.412456 kcal Electronic energy + Delta-G solvation = -26166.838007 eV Core-core repulsion = 22404.321985 eV Total energy + Delta-G solvation = -3762.516022 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.13673 -39.97846 -38.51826 -36.17910 -34.94846 -34.08419 -33.56825 -32.36736 -30.86631 -30.15423 -28.44363 -26.80086 -24.82211 -23.44405 -22.95228 -22.59976 -20.72075 -19.67388 -19.39196 -18.34371 -17.88609 -17.18131 -16.98097 -16.15677 -15.81047 -15.34062 -15.05935 -14.85539 -14.39518 -14.17960 -14.02881 -13.70843 -13.45666 -13.32324 -13.25805 -12.69690 -12.62161 -12.44961 -11.92920 -11.76494 -11.59382 -11.30368 -11.12380 -11.04371 -10.99261 -10.87159 -10.35119 -10.22842 -10.20116 -9.73450 -9.51066 -9.40738 -9.08390 -8.82322 -8.55807 -7.96818 -7.53117 -6.17505 -4.26914 1.09654 1.28694 2.37017 2.87819 3.12209 3.20136 3.28856 3.31257 3.54386 3.95646 4.20383 4.28128 4.50428 4.58113 4.80563 4.90715 4.95480 5.10738 5.14672 5.20284 5.33861 5.53698 5.63350 5.80134 5.89848 5.95870 6.05915 6.34147 6.37310 6.44386 6.51212 6.59888 6.63479 6.91104 6.96928 7.06901 7.15574 7.30241 7.32936 7.40242 7.59953 7.81080 7.81404 7.92680 8.13781 8.67921 8.78926 9.18691 9.41560 10.87817 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.002693 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.634081 B =10395.647096 C =10669.622614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.286 3.714 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.718 5.718 14 C 0.692 3.308 15 O -0.575 6.575 16 N -0.697 5.697 17 C 0.171 3.829 18 C -0.129 4.129 19 C -0.128 4.128 20 C 0.123 3.877 21 C -0.099 4.099 22 C -0.087 4.087 23 C -0.077 4.077 24 C -0.137 4.137 25 C 0.522 3.478 26 O -0.539 6.539 27 N -0.660 5.660 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.021 0.979 31 H 0.030 0.970 32 H 0.099 0.901 33 H 0.264 0.736 34 H 0.386 0.614 35 H 0.402 0.598 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.147 0.853 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.705 8.883 -11.321 17.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.369 5.369 14 C 0.392 3.608 15 O -0.453 6.453 16 N -0.345 5.345 17 C 0.073 3.927 18 C -0.150 4.150 19 C -0.149 4.149 20 C 0.028 3.972 21 C -0.102 4.102 22 C -0.108 4.108 23 C -0.115 4.115 24 C -0.177 4.177 25 C 0.311 3.689 26 O -0.416 6.416 27 N -0.305 5.305 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.218 0.782 35 H 0.237 0.763 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.165 0.835 39 H 0.112 0.888 40 H 0.103 0.897 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -10.781 9.091 -10.044 17.314 hybrid contribution 1.409 -0.389 -1.088 1.823 sum -9.372 8.702 -11.132 16.956 Atomic orbital electron populations 1.21812 0.98238 0.97935 1.01276 1.21961 0.92704 0.99876 1.02245 1.18732 0.94033 0.88893 0.79881 0.93171 1.21247 0.90628 1.39079 1.06320 0.92046 1.24876 0.98619 0.94784 0.95372 1.69906 1.35057 1.37537 1.09330 0.86400 0.84806 0.77792 0.78124 1.19775 1.20864 1.20875 1.45856 1.12992 1.58716 1.19311 1.16119 0.83612 0.78726 0.82317 1.90907 1.51674 1.64456 1.38238 1.42915 1.20121 1.56364 1.15126 1.17359 0.87069 0.93709 0.94520 1.20654 0.94702 1.02065 0.97630 1.20429 0.96709 1.00877 0.96848 1.17498 0.87267 0.98092 0.94353 1.19312 0.95971 1.01542 0.93384 1.20898 0.95515 0.94734 0.99657 1.20435 1.00583 0.94880 0.95572 1.21691 0.98735 0.99885 0.97372 1.20777 0.87339 0.77964 0.82858 1.90765 1.24427 1.51091 1.75307 1.43549 1.18825 1.38327 1.29751 0.93132 0.94296 0.96007 0.95107 0.88263 0.92559 0.78209 0.76304 0.85310 0.85412 0.83518 0.88767 0.89736 0.87900 0.87433 0.75475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 8.51 37.15 0.32 -2.63 16 2 C -0.13 -3.01 5.45 -26.74 -0.15 -3.16 16 3 C 0.29 6.82 2.24 -69.08 -0.15 6.66 16 4 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -13.45 8.73 -34.44 -0.30 -13.75 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.63 16 8 N -0.88 -23.89 11.29 55.43 0.63 -23.26 16 9 Si 0.90 19.94 29.54 -169.99 -5.02 14.92 16 10 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 13 N -0.72 -13.69 5.03 -59.81 -0.30 -14.00 16 14 C 0.69 12.60 6.86 -86.92 -0.60 12.01 16 15 O -0.58 -12.36 11.19 5.29 0.06 -12.31 16 16 N -0.70 -9.45 5.35 -14.28 -0.08 -9.53 16 17 C 0.17 2.23 6.26 -83.76 -0.52 1.70 16 18 C -0.13 -1.33 9.95 -39.42 -0.39 -1.72 16 19 C -0.13 -1.21 9.92 -39.42 -0.39 -1.60 16 20 C 0.12 1.32 6.51 -83.70 -0.54 0.77 16 21 C -0.10 -1.16 5.65 -104.52 -0.59 -1.75 16 22 C -0.09 -1.20 8.29 -39.58 -0.33 -1.53 16 23 C -0.08 -0.76 5.99 -27.95 -0.17 -0.93 16 24 C -0.14 -1.22 6.08 -28.03 -0.17 -1.39 16 25 C 0.52 5.94 7.72 -11.18 -0.09 5.85 16 26 O -0.54 -7.89 17.91 5.54 0.10 -7.79 16 27 N -0.66 -6.57 5.37 -9.99 -0.05 -6.62 16 28 H 0.05 1.17 7.84 -51.93 -0.41 0.77 16 29 H 0.04 0.83 5.65 -51.93 -0.29 0.53 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 33 H 0.26 6.81 8.31 -40.82 -0.34 6.48 16 34 H 0.39 6.28 8.56 -40.82 -0.35 5.93 16 35 H 0.40 4.10 8.83 -40.82 -0.36 3.74 16 36 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 37 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.15 2.35 6.41 -52.48 -0.34 2.02 16 39 H 0.09 0.84 8.06 -51.93 -0.42 0.42 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.41 3.35 8.84 -40.82 -0.36 2.99 16 LS Contribution 351.04 15.07 5.29 5.29 Total: -1.00 -31.36 351.04 -9.28 -40.64 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -5.73 Total: 12.48 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -4.17 Total: 0.17 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.20 Total: -53.40 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.16 Total: -20.10 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.36 -9.28 -40.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157031084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.771 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.641 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds