Wall clock time and date at job start Tue Mar 31 2020 11:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47232 * 2 1 4 4 H 1.08997 * 109.47011 * 54.99849 * 3 2 1 5 5 C 1.50703 * 109.47537 * 175.00273 * 3 2 1 6 6 H 1.07996 * 120.00545 * 119.99851 * 5 3 2 7 7 C 1.37875 * 119.99661 * 299.99967 * 5 3 2 8 8 N 1.31518 * 120.00025 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 120.00023 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47319 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47254 * 120.00260 * 9 7 5 12 12 H 1.48500 * 109.47034 * 239.99889 * 9 7 5 13 13 N 1.46504 * 109.47279 * 295.00185 * 3 2 1 14 14 C 1.34771 * 120.00087 * 84.99493 * 13 3 2 15 15 O 1.21591 * 120.00175 * 0.02562 * 14 13 3 16 16 N 1.34774 * 119.99904 * 180.02562 * 14 13 3 17 17 C 1.40119 * 120.00038 * 185.31092 * 16 14 13 18 18 C 1.38876 * 120.00016 * 213.20926 * 17 16 14 19 19 C 1.38040 * 120.01166 * 180.02562 * 18 17 16 20 20 C 1.38867 * 119.99345 * 0.02562 * 19 18 17 21 21 C 1.38730 * 119.87773 * 0.22677 * 20 19 18 22 22 C 1.38041 * 120.07023 * 0.03254 * 21 20 19 23 23 C 1.50676 * 119.80353 * 180.23743 * 21 20 19 24 24 C 1.52901 * 109.53300 * 325.77928 * 23 21 20 25 25 C 1.50500 * 109.90227 * 48.66336 * 24 23 21 26 26 O 1.21297 * 119.61798 * 144.79046 * 25 24 23 27 27 N 1.34557 * 120.76347 * 324.76282 * 25 24 23 28 28 H 1.08994 * 109.47208 * 299.99525 * 1 2 3 29 29 H 1.08997 * 109.47259 * 60.00561 * 1 2 3 30 30 H 1.09002 * 109.46984 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47390 * 239.99847 * 2 1 3 32 32 H 1.09004 * 109.47554 * 120.00275 * 2 1 3 33 33 H 0.97010 * 120.00027 * 179.97438 * 8 7 5 34 34 H 0.97003 * 119.99862 * 265.00303 * 13 3 2 35 35 H 0.96999 * 120.00268 * 5.31764 * 16 14 13 36 36 H 1.07991 * 119.99702 * 359.97438 * 18 17 16 37 37 H 1.08004 * 120.00407 * 179.97438 * 19 18 17 38 38 H 1.08003 * 120.01067 * 180.19539 * 22 21 20 39 39 H 1.08998 * 109.45832 * 205.75610 * 23 21 20 40 40 H 1.09001 * 109.45113 * 85.78966 * 23 21 20 41 41 H 1.08994 * 109.39622 * 288.53092 * 24 23 21 42 42 H 1.08998 * 109.40057 * 168.79579 * 24 23 21 43 43 H 0.96999 * 119.78305 * 180.77722 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4061 0.3375 2.1733 9 14 6.0050 0.8801 1.3811 10 1 6.5989 1.5442 0.1930 11 1 6.4000 1.6157 2.6091 12 1 6.4961 -0.5190 1.4626 13 7 1.6524 2.0975 -1.2518 14 6 0.4351 2.6643 -1.3670 15 8 -0.3413 2.6325 -0.4318 16 7 0.0784 3.2665 -2.5187 17 6 -1.1409 3.9518 -2.6026 18 6 -1.8447 3.9728 -3.7997 19 6 -3.0456 4.6484 -3.8827 20 6 -3.5498 5.3075 -2.7693 21 6 -2.8422 5.2893 -1.5762 22 6 -1.6387 4.6179 -1.4959 23 6 -3.3934 6.0005 -0.3676 24 6 -4.1416 7.2579 -0.8115 25 6 -5.0899 6.9216 -1.9307 26 8 -6.1568 7.4938 -2.0048 27 7 -4.7676 5.9938 -2.8504 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 3.8293 -0.0610 2.9499 34 1 2.2719 2.1231 -1.9978 35 1 0.6656 3.2254 -3.2897 36 1 -1.4520 3.4613 -4.6659 37 1 -3.5927 4.6650 -4.8139 38 1 -1.0901 4.6017 -0.5657 39 1 -2.5738 6.2802 0.2943 40 1 -4.0783 5.3384 0.1622 41 1 -3.4247 8.0031 -1.1560 42 1 -4.7040 7.6608 0.0308 43 1 -5.3847 5.7963 -3.5723 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157031084.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:19 Heat of formation + Delta-G solvation = -69.092072 kcal Electronic energy + Delta-G solvation = -26167.778106 eV Core-core repulsion = 22404.321985 eV Total energy + Delta-G solvation = -3763.456121 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.07279 -41.24445 -39.61105 -37.50176 -36.42296 -34.93586 -34.77295 -34.13500 -32.57458 -31.01163 -29.64439 -28.50376 -25.64725 -25.11558 -24.01010 -23.72057 -22.15407 -21.29802 -20.42108 -19.72889 -18.86716 -18.21256 -18.08222 -17.71492 -16.96241 -16.80359 -16.46429 -15.96637 -15.72160 -15.49045 -15.02475 -14.87642 -14.57812 -14.50958 -14.30359 -14.17169 -13.96841 -13.49566 -13.41667 -13.16249 -12.86084 -12.83132 -12.68399 -12.64463 -12.12740 -12.08825 -12.03334 -11.91534 -11.55779 -11.12667 -11.07069 -10.96829 -10.53444 -10.50388 -9.73643 -9.61920 -8.53703 -8.13849 -6.30324 0.17037 0.40509 1.45609 1.45822 1.47838 1.58425 1.85948 2.08369 2.28945 2.44408 2.88605 3.16224 3.36637 3.53036 3.72555 3.80228 4.00386 4.22653 4.32277 4.35032 4.49401 4.53278 4.61168 4.74964 4.80814 4.86080 4.91275 5.06413 5.08435 5.12115 5.19142 5.27438 5.41792 5.47862 5.55944 5.60415 5.65750 5.74849 5.80978 5.90845 5.97500 6.19697 6.21326 6.35113 6.78582 6.96668 7.32205 7.38594 7.78879 8.91596 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.002693 C = 0.002624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.634081 B =10395.647096 C =10669.622614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.297 3.703 4 H 0.001 0.999 5 C -0.544 4.544 6 H 0.072 0.928 7 C 0.016 3.984 8 N -0.914 5.914 9 Si 0.968 3.032 10 H -0.260 1.260 11 H -0.286 1.286 12 H -0.281 1.281 13 N -0.716 5.716 14 C 0.692 3.308 15 O -0.612 6.612 16 N -0.678 5.678 17 C 0.145 3.855 18 C -0.116 4.116 19 C -0.116 4.116 20 C 0.123 3.877 21 C -0.107 4.107 22 C -0.108 4.108 23 C -0.077 4.077 24 C -0.130 4.130 25 C 0.520 3.480 26 O -0.575 6.575 27 N -0.651 5.651 28 H 0.025 0.975 29 H 0.043 0.957 30 H 0.041 0.959 31 H 0.040 0.960 32 H 0.071 0.929 33 H 0.264 0.736 34 H 0.402 0.598 35 H 0.420 0.580 36 H 0.160 0.840 37 H 0.164 0.836 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.080 0.920 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.532 9.245 -14.086 19.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.161 4.161 3 C 0.194 3.806 4 H 0.019 0.981 5 C -0.583 4.583 6 H 0.090 0.910 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.184 1.184 11 H -0.212 1.212 12 H -0.206 1.206 13 N -0.368 5.368 14 C 0.393 3.607 15 O -0.492 6.492 16 N -0.328 5.328 17 C 0.049 3.951 18 C -0.137 4.137 19 C -0.137 4.137 20 C 0.027 3.973 21 C -0.110 4.110 22 C -0.130 4.130 23 C -0.114 4.114 24 C -0.170 4.170 25 C 0.310 3.690 26 O -0.454 6.454 27 N -0.295 5.295 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.089 0.911 33 H 0.073 0.927 34 H 0.236 0.764 35 H 0.259 0.741 36 H 0.178 0.822 37 H 0.182 0.818 38 H 0.133 0.867 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -10.604 9.471 -12.898 19.197 hybrid contribution 1.264 -0.453 -0.271 1.370 sum -9.340 9.019 -13.170 18.494 Atomic orbital electron populations 1.21631 0.97028 0.98786 1.00230 1.21805 0.93657 0.99389 1.01215 1.18244 0.93327 0.88748 0.80325 0.98134 1.21594 0.91421 1.38678 1.06573 0.90985 1.25726 1.03047 0.94506 0.95117 1.70057 1.36883 1.38449 1.09884 0.85358 0.79442 0.77717 0.78160 1.18429 1.21192 1.20641 1.45441 1.13936 1.59035 1.18421 1.16186 0.82861 0.78591 0.83106 1.90894 1.52612 1.65641 1.40027 1.42543 1.20773 1.55346 1.14092 1.17615 0.87307 0.94542 0.95613 1.20944 0.94296 1.01247 0.97191 1.20835 0.96239 0.98989 0.97635 1.17616 0.87224 0.98010 0.94409 1.19432 0.95486 1.01483 0.94612 1.20728 0.96541 0.96685 0.99005 1.20445 1.00671 0.95164 0.95142 1.21701 0.98545 0.99641 0.97104 1.21145 0.87046 0.77603 0.83230 1.90753 1.25916 1.52499 1.76255 1.43472 1.18691 1.37641 1.29708 0.95599 0.93845 0.94043 0.94094 0.91097 0.92662 0.76378 0.74149 0.82199 0.81841 0.86719 0.88372 0.90147 0.86355 0.86207 0.74355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.27 8.51 71.98 0.61 -4.65 16 2 C -0.12 -5.79 5.45 30.59 0.17 -5.62 16 3 C 0.30 14.53 2.24 44.24 0.10 14.63 16 4 H 0.00 0.04 7.58 -2.39 -0.02 0.03 16 5 C -0.54 -27.56 8.73 25.60 0.22 -27.34 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 0.84 5.29 84.65 0.45 1.29 16 8 N -0.91 -50.98 11.29 21.45 0.24 -50.73 16 9 Si 0.97 40.86 29.54 68.60 2.03 42.89 16 10 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 11 H -0.29 -12.13 7.11 99.48 0.71 -11.42 16 12 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 13 N -0.72 -27.35 5.03 -461.41 -2.32 -29.67 16 14 C 0.69 25.39 6.86 179.06 1.23 26.62 16 15 O -0.61 -27.33 11.19 -4.00 -0.04 -27.38 16 16 N -0.68 -17.59 5.35 -317.37 -1.70 -19.29 16 17 C 0.15 3.60 6.26 38.01 0.24 3.84 16 18 C -0.12 -1.99 9.95 22.38 0.22 -1.76 16 19 C -0.12 -1.77 9.92 22.37 0.22 -1.55 16 20 C 0.12 2.35 6.51 38.10 0.25 2.60 16 21 C -0.11 -2.45 5.65 -19.80 -0.11 -2.57 16 22 C -0.11 -3.03 8.29 22.27 0.18 -2.84 16 23 C -0.08 -1.50 5.99 29.81 0.18 -1.32 16 24 C -0.13 -2.18 6.08 29.75 0.18 -2.00 16 25 C 0.52 11.15 7.72 87.63 0.68 11.83 16 26 O -0.57 -16.33 17.91 -3.08 -0.06 -16.38 16 27 N -0.65 -11.59 5.37 -304.01 -1.63 -13.22 16 28 H 0.02 1.23 7.84 -2.39 -0.02 1.21 16 29 H 0.04 1.85 5.65 -2.39 -0.01 1.84 16 30 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 31 H 0.04 1.82 8.14 -2.38 -0.02 1.81 16 32 H 0.07 3.82 5.95 -2.38 -0.01 3.80 16 33 H 0.26 13.98 8.31 -92.70 -0.77 13.21 16 34 H 0.40 12.64 8.56 -92.71 -0.79 11.84 16 35 H 0.42 7.61 8.83 -92.71 -0.82 6.79 16 36 H 0.16 1.76 8.06 -2.92 -0.02 1.74 16 37 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.11 3.94 6.41 -2.91 -0.02 3.92 16 39 H 0.10 1.81 8.06 -2.39 -0.02 1.79 16 40 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.42 5.82 8.84 -92.71 -0.82 5.00 16 Total: -1.00 -70.47 351.04 -0.01 -70.48 By element: Atomic # 1 Polarization: 33.50 SS G_CDS: -1.35 Total: 32.15 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 4.82 Total: 11.16 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -5.41 Total: -112.91 kcal Atomic # 8 Polarization: -43.66 SS G_CDS: -0.10 Total: -43.76 kcal Atomic # 14 Polarization: 40.86 SS G_CDS: 2.03 Total: 42.89 kcal Total: -70.47 -0.01 -70.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157031084.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.390 kcal (2) G-P(sol) polarization free energy of solvation -70.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds