Wall clock time and date at job start Tue Mar 31 2020 11:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47390 * 2 1 4 4 H 1.09008 * 109.46773 * 304.99802 * 3 2 1 5 5 C 1.50693 * 109.47267 * 185.00000 * 3 2 1 6 6 H 1.08002 * 120.00273 * 239.99662 * 5 3 2 7 7 C 1.37879 * 120.00076 * 59.99759 * 5 3 2 8 8 N 1.31510 * 120.00313 * 0.02562 * 7 5 3 9 9 Si 1.86809 * 119.99972 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46954 * 60.00229 * 9 7 5 11 11 H 1.48496 * 109.46896 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47296 * 300.00251 * 9 7 5 13 13 N 1.46494 * 109.47233 * 64.99837 * 3 2 1 14 14 C 1.34784 * 119.99987 * 275.00099 * 13 3 2 15 15 O 1.21591 * 120.00031 * 0.02562 * 14 13 3 16 16 N 1.34778 * 119.99756 * 179.97438 * 14 13 3 17 17 C 1.40113 * 119.99483 * 184.61885 * 16 14 13 18 18 C 1.38880 * 120.00218 * 324.88525 * 17 16 14 19 19 C 1.38035 * 120.01757 * 180.02562 * 18 17 16 20 20 C 1.39022 * 119.95566 * 359.74861 * 19 18 17 21 21 C 1.38723 * 119.97685 * 0.49945 * 20 19 18 22 22 C 1.38036 * 120.07174 * 359.50802 * 21 20 19 23 23 C 1.50666 * 119.80014 * 179.76693 * 21 20 19 24 24 C 1.52899 * 109.54171 * 325.80089 * 23 21 20 25 25 C 1.50494 * 109.90964 * 48.64507 * 24 23 21 26 26 O 1.21290 * 119.62061 * 144.78988 * 25 24 23 27 27 N 1.34559 * 120.75910 * 324.76033 * 25 24 23 28 28 H 1.09000 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47109 * 300.00491 * 1 2 3 30 30 H 1.09002 * 109.46617 * 59.99769 * 1 2 3 31 31 H 1.09002 * 109.47209 * 240.00046 * 2 1 3 32 32 H 1.09001 * 109.47165 * 119.99702 * 2 1 3 33 33 H 0.96997 * 120.00542 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00139 * 94.99913 * 13 3 2 35 35 H 0.96991 * 120.00305 * 4.62579 * 16 14 13 36 36 H 1.08005 * 119.99308 * 0.04056 * 18 17 16 37 37 H 1.07998 * 120.00926 * 180.02562 * 19 18 17 38 38 H 1.07997 * 120.01153 * 180.27063 * 22 21 20 39 39 H 1.09002 * 109.46065 * 205.77518 * 23 21 20 40 40 H 1.09005 * 109.45101 * 85.81656 * 23 21 20 41 41 H 1.08998 * 109.39694 * 288.50860 * 24 23 21 42 42 H 1.09006 * 109.39512 * 168.77940 * 24 23 21 43 43 H 0.96996 * 119.77608 * 180.80576 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8889 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3374 -2.1733 9 14 6.0050 0.8811 -1.3818 10 1 6.5976 0.1472 -0.2348 11 1 6.3979 0.2165 -2.6502 12 1 6.4996 2.2814 -1.3821 13 7 1.6525 2.0975 1.2517 14 6 0.4352 2.6645 1.3668 15 8 -0.3415 2.6319 0.4319 16 7 0.0785 3.2666 2.5187 17 6 -1.2197 3.7706 2.6728 18 6 -1.8825 4.3264 1.5862 19 6 -3.1613 4.8234 1.7378 20 6 -3.7873 4.7626 2.9777 21 6 -3.1224 4.2119 4.0635 22 6 -1.8435 3.7149 3.9121 23 6 -3.8026 4.1527 5.4066 24 6 -4.6983 5.3795 5.5807 25 6 -5.5562 5.5654 4.3583 26 8 -6.6874 5.9865 4.4782 27 7 -5.0827 5.2704 3.1339 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0605 -2.9502 34 1 2.2720 2.1232 1.9977 35 1 0.7205 3.3512 3.2408 36 1 -1.3973 4.3695 0.6223 37 1 -3.6767 5.2552 0.8927 38 1 -1.3285 3.2824 4.7571 39 1 -3.0497 4.1379 6.1946 40 1 -4.4090 3.2489 5.4668 41 1 -4.0773 6.2636 5.7250 42 1 -5.3366 5.2408 6.4534 43 1 -5.6439 5.4067 2.3546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157031241.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:23 Heat of formation + Delta-G solvation = -46.913886 kcal Electronic energy + Delta-G solvation = -26006.603138 eV Core-core repulsion = 22244.108736 eV Total energy + Delta-G solvation = -3762.494402 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.15421 -39.99285 -38.52876 -36.18145 -34.90411 -34.16563 -33.61832 -32.35395 -30.86663 -30.19012 -28.43000 -26.79935 -24.87348 -23.41345 -22.97937 -22.52292 -21.01483 -19.59672 -19.27179 -18.27034 -17.97316 -17.29280 -17.00400 -16.07357 -15.95258 -15.20597 -15.13437 -14.85251 -14.39684 -14.31663 -14.11590 -13.81113 -13.47787 -13.37481 -13.12087 -12.70972 -12.68677 -12.41077 -11.99933 -11.70942 -11.63911 -11.38206 -11.28816 -11.03475 -10.91478 -10.81169 -10.36965 -10.24709 -10.22653 -9.73431 -9.51420 -9.34621 -9.09413 -8.87095 -8.54950 -7.97019 -7.53557 -6.16795 -4.26527 1.09990 1.25784 2.33794 2.85834 3.11290 3.22159 3.28186 3.29769 3.55817 3.93282 4.14774 4.28199 4.39676 4.50420 4.70996 4.85717 4.89618 5.12792 5.15046 5.25615 5.32051 5.40087 5.51928 5.61199 5.85568 5.94724 6.14438 6.36188 6.37827 6.44895 6.48188 6.57529 6.64257 6.94074 6.97251 7.06223 7.15315 7.30505 7.33343 7.40667 7.59781 7.77627 7.81776 7.93103 8.14257 8.67905 8.79029 9.18898 9.41815 10.88458 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.035338 B = 0.002465 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.147399 B =11354.500107 C =11540.649659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.128 4.128 3 C 0.287 3.713 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.060 0.940 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.718 5.718 14 C 0.693 3.307 15 O -0.576 6.576 16 N -0.697 5.697 17 C 0.167 3.833 18 C -0.090 4.090 19 C -0.127 4.127 20 C 0.125 3.875 21 C -0.105 4.105 22 C -0.121 4.121 23 C -0.074 4.074 24 C -0.137 4.137 25 C 0.520 3.480 26 O -0.539 6.539 27 N -0.660 5.660 28 H 0.021 0.979 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.030 0.970 33 H 0.266 0.734 34 H 0.386 0.614 35 H 0.402 0.598 36 H 0.151 0.849 37 H 0.129 0.871 38 H 0.130 0.870 39 H 0.090 0.910 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.104 7.497 14.494 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.167 4.167 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.519 5.519 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.202 1.202 13 N -0.369 5.369 14 C 0.393 3.607 15 O -0.454 6.454 16 N -0.345 5.345 17 C 0.070 3.930 18 C -0.111 4.111 19 C -0.148 4.148 20 C 0.030 3.970 21 C -0.108 4.108 22 C -0.143 4.143 23 C -0.112 4.112 24 C -0.177 4.177 25 C 0.309 3.691 26 O -0.416 6.416 27 N -0.304 5.304 28 H 0.040 0.960 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.117 0.883 32 H 0.049 0.951 33 H 0.076 0.924 34 H 0.218 0.782 35 H 0.237 0.763 36 H 0.169 0.831 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.109 0.891 40 H 0.100 0.900 41 H 0.121 0.879 42 H 0.125 0.875 43 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -11.244 7.507 13.623 19.193 hybrid contribution 1.485 -0.053 0.147 1.493 sum -9.759 7.453 13.770 18.450 Atomic orbital electron populations 1.21813 0.98242 0.97925 1.01269 1.21959 0.92702 0.99853 1.02234 1.18721 0.93989 0.88898 0.79887 0.93184 1.21176 0.90635 1.39269 1.06362 0.92152 1.24873 0.98611 0.94761 0.95359 1.69877 1.35260 1.37411 1.09304 0.86510 0.84793 0.78309 0.77483 1.20175 1.21116 1.20190 1.45847 1.13258 1.58413 1.19346 1.16115 0.83678 0.78672 0.82223 1.90885 1.51775 1.64744 1.37980 1.42863 1.11825 1.61525 1.18310 1.17483 0.85438 0.96096 0.93961 1.21309 0.94352 0.95372 1.00105 1.20737 0.95520 1.02981 0.95598 1.17561 0.85033 0.99685 0.94762 1.19094 0.94976 1.02296 0.94444 1.20512 0.93947 1.02715 0.97126 1.20392 0.98534 0.97710 0.94528 1.21674 0.99025 1.00877 0.96115 1.20738 0.87338 0.75991 0.85037 1.90770 1.19459 1.45026 1.86315 1.43578 1.14234 1.62947 1.09641 0.96011 0.94296 0.93138 0.88269 0.95103 0.92436 0.78213 0.76308 0.83114 0.85309 0.85218 0.89111 0.89981 0.87899 0.87516 0.75284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.95 8.51 37.16 0.32 -2.63 16 2 C -0.13 -3.02 5.45 -26.73 -0.15 -3.16 16 3 C 0.29 6.86 2.24 -69.09 -0.15 6.70 16 4 H 0.05 1.40 7.58 -51.92 -0.39 1.00 16 5 C -0.54 -13.54 8.73 -34.44 -0.30 -13.84 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -23.99 11.29 55.43 0.63 -23.36 16 9 Si 0.90 19.98 29.54 -169.99 -5.02 14.96 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 11 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 12 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 13 N -0.72 -13.74 5.03 -59.81 -0.30 -14.04 16 14 C 0.69 12.66 6.98 -86.91 -0.61 12.05 16 15 O -0.58 -12.41 10.91 5.29 0.06 -12.35 16 16 N -0.70 -9.42 5.35 -14.18 -0.08 -9.50 16 17 C 0.17 2.17 6.30 -83.61 -0.53 1.65 16 18 C -0.09 -1.26 8.69 -39.42 -0.34 -1.60 16 19 C -0.13 -1.46 9.92 -39.36 -0.39 -1.85 16 20 C 0.13 1.33 6.51 -83.65 -0.54 0.79 16 21 C -0.10 -1.02 5.65 -104.53 -0.59 -1.61 16 22 C -0.12 -1.24 9.60 -39.43 -0.38 -1.62 16 23 C -0.07 -0.52 5.99 -27.95 -0.17 -0.69 16 24 C -0.14 -1.00 6.08 -28.04 -0.17 -1.17 16 25 C 0.52 5.57 7.72 -11.18 -0.09 5.48 16 26 O -0.54 -7.63 17.91 5.55 0.10 -7.53 16 27 N -0.66 -6.54 5.37 -9.95 -0.05 -6.60 16 28 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 30 H 0.05 1.17 7.84 -51.93 -0.41 0.77 16 31 H 0.10 2.59 5.95 -51.93 -0.31 2.28 16 32 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 34 H 0.39 6.28 8.56 -40.82 -0.35 5.93 16 35 H 0.40 4.07 8.84 -40.82 -0.36 3.71 16 36 H 0.15 2.46 6.22 -52.48 -0.33 2.13 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 38 H 0.13 1.01 8.06 -52.49 -0.42 0.59 16 39 H 0.09 0.44 8.06 -51.93 -0.42 0.03 16 40 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.11 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.41 3.58 8.83 -40.82 -0.36 3.22 16 LS Contribution 350.78 15.07 5.29 5.29 Total: -1.00 -31.49 350.78 -9.28 -40.77 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -5.72 Total: 12.22 kcal Atomic # 6 Polarization: 4.33 SS G_CDS: -4.18 Total: 0.15 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.20 Total: -53.51 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.16 Total: -19.89 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -5.02 Total: 14.96 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.49 -9.28 -40.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157031241.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.142 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds