Wall clock time and date at job start Tue Mar 31 2020 11:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.47390 * 2 1 4 4 H 1.09008 * 109.46773 * 304.99802 * 3 2 1 5 5 C 1.50693 * 109.47267 * 185.00000 * 3 2 1 6 6 H 1.08002 * 120.00273 * 239.99662 * 5 3 2 7 7 C 1.37879 * 120.00076 * 59.99759 * 5 3 2 8 8 N 1.31510 * 120.00313 * 0.02562 * 7 5 3 9 9 Si 1.86809 * 119.99972 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46954 * 60.00229 * 9 7 5 11 11 H 1.48496 * 109.46896 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.47296 * 300.00251 * 9 7 5 13 13 N 1.46494 * 109.47233 * 64.99837 * 3 2 1 14 14 C 1.34784 * 119.99987 * 275.00099 * 13 3 2 15 15 O 1.21591 * 120.00031 * 0.02562 * 14 13 3 16 16 N 1.34778 * 119.99756 * 179.97438 * 14 13 3 17 17 C 1.40113 * 119.99483 * 184.61885 * 16 14 13 18 18 C 1.38880 * 120.00218 * 324.88525 * 17 16 14 19 19 C 1.38035 * 120.01757 * 180.02562 * 18 17 16 20 20 C 1.39022 * 119.95566 * 359.74861 * 19 18 17 21 21 C 1.38723 * 119.97685 * 0.49945 * 20 19 18 22 22 C 1.38036 * 120.07174 * 359.50802 * 21 20 19 23 23 C 1.50666 * 119.80014 * 179.76693 * 21 20 19 24 24 C 1.52899 * 109.54171 * 325.80089 * 23 21 20 25 25 C 1.50494 * 109.90964 * 48.64507 * 24 23 21 26 26 O 1.21290 * 119.62061 * 144.78988 * 25 24 23 27 27 N 1.34559 * 120.75910 * 324.76033 * 25 24 23 28 28 H 1.09000 * 109.47248 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47109 * 300.00491 * 1 2 3 30 30 H 1.09002 * 109.46617 * 59.99769 * 1 2 3 31 31 H 1.09002 * 109.47209 * 240.00046 * 2 1 3 32 32 H 1.09001 * 109.47165 * 119.99702 * 2 1 3 33 33 H 0.96997 * 120.00542 * 179.97438 * 8 7 5 34 34 H 0.97001 * 120.00139 * 94.99913 * 13 3 2 35 35 H 0.96991 * 120.00305 * 4.62579 * 16 14 13 36 36 H 1.08005 * 119.99308 * 0.04056 * 18 17 16 37 37 H 1.07998 * 120.00926 * 180.02562 * 19 18 17 38 38 H 1.07997 * 120.01153 * 180.27063 * 22 21 20 39 39 H 1.09002 * 109.46065 * 205.77518 * 23 21 20 40 40 H 1.09005 * 109.45101 * 85.81656 * 23 21 20 41 41 H 1.08998 * 109.39694 * 288.50860 * 24 23 21 42 42 H 1.09006 * 109.39512 * 168.77940 * 24 23 21 43 43 H 0.96996 * 119.77608 * 180.80576 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8889 0.6523 7 6 4.1433 0.8783 -1.2279 8 7 3.4063 0.3374 -2.1733 9 14 6.0050 0.8811 -1.3818 10 1 6.5976 0.1472 -0.2348 11 1 6.3979 0.2165 -2.6502 12 1 6.4996 2.2814 -1.3821 13 7 1.6525 2.0975 1.2517 14 6 0.4352 2.6645 1.3668 15 8 -0.3415 2.6319 0.4319 16 7 0.0785 3.2666 2.5187 17 6 -1.2197 3.7706 2.6728 18 6 -1.8825 4.3264 1.5862 19 6 -3.1613 4.8234 1.7378 20 6 -3.7873 4.7626 2.9777 21 6 -3.1224 4.2119 4.0635 22 6 -1.8435 3.7149 3.9121 23 6 -3.8026 4.1527 5.4066 24 6 -4.6983 5.3795 5.5807 25 6 -5.5562 5.5654 4.3583 26 8 -6.6874 5.9865 4.4782 27 7 -5.0827 5.2704 3.1339 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8293 -0.0605 -2.9502 34 1 2.2720 2.1232 1.9977 35 1 0.7205 3.3512 3.2408 36 1 -1.3973 4.3695 0.6223 37 1 -3.6767 5.2552 0.8927 38 1 -1.3285 3.2824 4.7571 39 1 -3.0497 4.1379 6.1946 40 1 -4.4090 3.2489 5.4668 41 1 -4.0773 6.2636 5.7250 42 1 -5.3366 5.2408 6.4534 43 1 -5.6439 5.4067 2.3546 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157031241.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:23 Heat of formation + Delta-G solvation = -68.872237 kcal Electronic energy + Delta-G solvation = -26007.555324 eV Core-core repulsion = 22244.108736 eV Total energy + Delta-G solvation = -3763.446588 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.04281 -41.25120 -39.59469 -37.50454 -36.37251 -34.89607 -34.82300 -34.12373 -32.57800 -30.99874 -29.62497 -28.49863 -25.58315 -25.09784 -23.96622 -23.62079 -22.35602 -21.34208 -20.33761 -19.58260 -18.82026 -18.51295 -17.91765 -17.64018 -17.01517 -16.72060 -16.48479 -15.95431 -15.75603 -15.50446 -14.99681 -14.91470 -14.55400 -14.53003 -14.36692 -14.03494 -13.90210 -13.49714 -13.44348 -13.15112 -12.87404 -12.78486 -12.63628 -12.44637 -12.31257 -12.16363 -12.03899 -11.78347 -11.54835 -11.13080 -11.04626 -10.92144 -10.53335 -10.50468 -9.74997 -9.61538 -8.54360 -8.13532 -6.30480 0.17629 0.38507 1.46908 1.48546 1.49075 1.56219 1.85564 2.08648 2.29041 2.44693 2.86783 3.16168 3.42134 3.53973 3.73689 3.80675 4.05977 4.30076 4.36194 4.39969 4.45896 4.53101 4.60935 4.78115 4.82777 4.93615 4.95167 5.00196 5.10041 5.17230 5.24536 5.28343 5.43361 5.47701 5.54412 5.60178 5.65633 5.70749 5.80833 5.91159 5.99748 6.20147 6.23443 6.35000 6.78044 6.96293 7.32550 7.38492 7.79041 8.91493 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.035338 B = 0.002465 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.147399 B =11354.500107 C =11540.649659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.297 3.703 4 H -0.001 1.001 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.264 1.264 11 H -0.289 1.289 12 H -0.272 1.272 13 N -0.716 5.716 14 C 0.692 3.308 15 O -0.613 6.613 16 N -0.677 5.677 17 C 0.143 3.857 18 C -0.115 4.115 19 C -0.131 4.131 20 C 0.126 3.874 21 C -0.100 4.100 22 C -0.105 4.105 23 C -0.070 4.070 24 C -0.132 4.132 25 C 0.515 3.485 26 O -0.579 6.579 27 N -0.657 5.657 28 H 0.041 0.959 29 H 0.043 0.957 30 H 0.024 0.976 31 H 0.071 0.929 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.402 0.598 35 H 0.421 0.579 36 H 0.117 0.883 37 H 0.138 0.862 38 H 0.165 0.835 39 H 0.125 0.875 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.123 0.877 43 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.564 7.556 17.996 21.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.194 3.806 4 H 0.017 0.983 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.189 1.189 11 H -0.215 1.215 12 H -0.197 1.197 13 N -0.368 5.368 14 C 0.392 3.608 15 O -0.493 6.493 16 N -0.327 5.327 17 C 0.047 3.953 18 C -0.136 4.136 19 C -0.152 4.152 20 C 0.030 3.970 21 C -0.103 4.103 22 C -0.125 4.125 23 C -0.107 4.107 24 C -0.172 4.172 25 C 0.306 3.694 26 O -0.459 6.459 27 N -0.301 5.301 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.043 0.957 31 H 0.089 0.911 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.237 0.763 35 H 0.259 0.741 36 H 0.135 0.865 37 H 0.155 0.845 38 H 0.182 0.818 39 H 0.143 0.857 40 H 0.106 0.894 41 H 0.137 0.863 42 H 0.142 0.858 43 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -10.696 7.593 17.196 21.628 hybrid contribution 1.190 0.006 -0.932 1.511 sum -9.506 7.599 16.264 20.314 Atomic orbital electron populations 1.21631 0.97049 0.98773 1.00201 1.21801 0.93637 0.99356 1.01215 1.18235 0.93323 0.88761 0.80328 0.98263 1.21546 0.91423 1.38863 1.06667 0.90908 1.25738 1.03115 0.94465 0.95088 1.70038 1.37080 1.38364 1.09840 0.85455 0.79331 0.78385 0.77487 1.18894 1.21453 1.19724 1.45425 1.14203 1.58725 1.18444 1.16202 0.82899 0.78611 0.83053 1.90878 1.52733 1.65932 1.39788 1.42478 1.12697 1.60339 1.17142 1.17695 0.85283 0.97275 0.95014 1.21114 0.95553 0.97631 0.99333 1.20772 0.94851 1.02902 0.96701 1.17656 0.85146 0.99451 0.94746 1.19502 0.94699 1.00611 0.95525 1.20776 0.93821 1.01344 0.96610 1.20502 0.99088 0.97624 0.93468 1.21757 0.98920 1.01820 0.94657 1.21465 0.87186 0.74851 0.85913 1.90755 1.21366 1.46951 1.86829 1.43623 1.13981 1.62436 1.10028 0.94030 0.93849 0.95657 0.91105 0.94059 0.92645 0.76320 0.74078 0.86547 0.84454 0.81784 0.85728 0.89369 0.86262 0.85841 0.75056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.29 8.51 71.98 0.61 -4.67 16 2 C -0.12 -5.79 5.45 30.60 0.17 -5.62 16 3 C 0.30 14.61 2.24 44.24 0.10 14.71 16 4 H 0.00 -0.03 7.58 -2.38 -0.02 -0.05 16 5 C -0.55 -27.76 8.73 25.60 0.22 -27.54 16 6 H 0.07 3.42 7.74 -2.91 -0.02 3.40 16 7 C 0.02 0.84 5.29 84.66 0.45 1.29 16 8 N -0.91 -51.27 11.29 21.45 0.24 -51.03 16 9 Si 0.97 40.89 29.54 68.60 2.03 42.91 16 10 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 11 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 12 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 13 N -0.72 -27.40 5.03 -461.40 -2.32 -29.72 16 14 C 0.69 25.52 6.98 179.05 1.25 26.77 16 15 O -0.61 -27.62 10.91 -4.00 -0.04 -27.66 16 16 N -0.68 -17.49 5.35 -317.03 -1.70 -19.19 16 17 C 0.14 3.55 6.30 38.12 0.24 3.79 16 18 C -0.12 -3.28 8.69 22.38 0.19 -3.09 16 19 C -0.13 -3.03 9.92 22.41 0.22 -2.80 16 20 C 0.13 2.47 6.51 38.14 0.25 2.72 16 21 C -0.10 -1.62 5.65 -19.81 -0.11 -1.73 16 22 C -0.10 -1.77 9.60 22.37 0.21 -1.56 16 23 C -0.07 -0.65 5.99 29.80 0.18 -0.47 16 24 C -0.13 -1.44 6.08 29.75 0.18 -1.26 16 25 C 0.52 10.08 7.72 87.63 0.68 10.75 16 26 O -0.58 -15.90 17.91 -3.06 -0.05 -15.95 16 27 N -0.66 -12.22 5.37 -303.91 -1.63 -13.85 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.04 1.86 5.64 -2.39 -0.01 1.85 16 30 H 0.02 1.21 7.84 -2.39 -0.02 1.19 16 31 H 0.07 3.83 5.95 -2.39 -0.01 3.81 16 32 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 34 H 0.40 12.59 8.56 -92.71 -0.79 11.80 16 35 H 0.42 7.48 8.84 -92.71 -0.82 6.66 16 36 H 0.12 4.13 6.22 -2.91 -0.02 4.11 16 37 H 0.14 2.75 8.06 -2.91 -0.02 2.73 16 38 H 0.16 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.12 0.43 8.06 -2.39 -0.02 0.41 16 40 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 43 H 0.41 7.03 8.83 -92.71 -0.82 6.21 16 Total: -1.00 -71.83 350.78 0.02 -71.81 By element: Atomic # 1 Polarization: 32.73 SS G_CDS: -1.35 Total: 31.38 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 4.84 Total: 11.29 kcal Atomic # 7 Polarization: -108.38 SS G_CDS: -5.40 Total: -113.78 kcal Atomic # 8 Polarization: -43.52 SS G_CDS: -0.10 Total: -43.61 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.91 kcal Total: -71.83 0.02 -71.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157031241.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.939 kcal (2) G-P(sol) polarization free energy of solvation -71.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds