Wall clock time and date at job start Tue Mar 31 2020 11:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47220 * 2 1 4 4 H 1.09004 * 109.46466 * 55.00306 * 3 2 1 5 5 C 1.50696 * 109.46814 * 175.00237 * 3 2 1 6 6 H 1.07999 * 119.99726 * 120.00815 * 5 3 2 7 7 C 1.37872 * 120.00239 * 300.00192 * 5 3 2 8 8 N 1.31520 * 119.99996 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99945 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47256 * 89.99912 * 9 7 5 11 11 H 1.48500 * 109.47031 * 209.99861 * 9 7 5 12 12 H 1.48494 * 109.46899 * 329.99990 * 9 7 5 13 13 N 1.46496 * 109.47227 * 295.00670 * 3 2 1 14 14 C 1.34773 * 120.00453 * 84.99791 * 13 3 2 15 15 O 1.21596 * 119.99563 * 0.02562 * 14 13 3 16 16 N 1.34774 * 120.00507 * 180.02562 * 14 13 3 17 17 C 1.39947 * 120.00268 * 185.31806 * 16 14 13 18 18 C 1.38935 * 120.02862 * 213.28634 * 17 16 14 19 19 C 1.38156 * 120.07138 * 180.02562 * 18 17 16 20 20 C 1.38145 * 120.12518 * 359.95803 * 19 18 17 21 21 C 1.38921 * 120.08208 * 0.02562 * 20 19 18 22 22 C 1.38730 * 120.03005 * 33.26198 * 17 16 14 23 23 N 1.39834 * 119.93480 * 179.97438 * 21 20 19 24 24 C 1.34558 * 120.45873 * 18.51534 * 23 21 20 25 25 O 1.21295 * 119.61655 * 180.80434 * 24 23 21 26 26 C 1.50493 * 120.76631 * 0.80642 * 24 23 21 27 27 C 1.50686 * 120.10853 * 179.97438 * 20 19 18 28 28 H 1.08995 * 109.47176 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.46616 * 299.99525 * 1 2 3 30 30 H 1.08995 * 109.47099 * 59.99157 * 1 2 3 31 31 H 1.08999 * 109.46213 * 240.00332 * 2 1 3 32 32 H 1.08995 * 109.47099 * 120.00843 * 2 1 3 33 33 H 0.96997 * 119.99618 * 180.02562 * 8 7 5 34 34 H 0.96998 * 119.99589 * 264.99808 * 13 3 2 35 35 H 0.97001 * 119.99717 * 5.31402 * 16 14 13 36 36 H 1.07999 * 119.96679 * 0.02562 * 18 17 16 37 37 H 1.08004 * 119.92963 * 179.97438 * 19 18 17 38 38 H 1.07998 * 120.07875 * 0.26958 * 22 17 16 39 39 H 0.96997 * 119.77065 * 198.52174 * 23 21 20 40 40 H 1.09005 * 109.39823 * 204.65372 * 26 24 23 41 41 H 1.08996 * 109.39802 * 84.91954 * 26 24 23 42 42 H 1.09003 * 109.46403 * 266.07550 * 27 20 19 43 43 H 1.08998 * 109.46081 * 26.05858 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8782 1.2278 8 7 3.4063 0.3373 2.1732 9 14 6.0051 0.8810 1.3815 10 1 6.4419 2.1139 2.0846 11 1 6.4397 -0.3101 2.1545 12 1 6.6136 0.8415 0.0275 13 7 1.6524 2.0976 -1.2517 14 6 0.4352 2.6645 -1.3668 15 8 -0.3411 2.6327 -0.4314 16 7 0.0783 3.2667 -2.5185 17 6 -1.1394 3.9513 -2.6021 18 6 -1.8449 3.9715 -3.7988 19 6 -3.0469 4.6475 -3.8825 20 6 -3.5512 5.3046 -2.7769 21 6 -2.8507 5.2880 -1.5774 22 6 -1.6433 4.6101 -1.4901 23 7 -3.3638 5.9546 -0.4604 24 6 -4.6654 6.2910 -0.4052 25 8 -5.0912 6.8820 0.5647 26 6 -5.5991 5.9426 -1.5328 27 6 -4.8619 6.0424 -2.8688 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8294 -0.0605 2.9501 34 1 2.2719 2.1232 -1.9977 35 1 0.6656 3.2255 -3.2895 36 1 -1.4534 3.4581 -4.6646 37 1 -3.5932 4.6620 -4.8140 38 1 -1.0947 4.5992 -0.5598 39 1 -2.7773 6.1761 0.2797 40 1 -6.4418 6.6340 -1.5319 41 1 -5.9668 4.9255 -1.3972 42 1 -4.6732 7.0904 -3.1019 43 1 -5.4734 5.5998 -3.6550 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157528905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:50 Heat of formation + Delta-G solvation = -47.775399 kcal Electronic energy + Delta-G solvation = -26246.748298 eV Core-core repulsion = 22484.216538 eV Total energy + Delta-G solvation = -3762.531760 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.11223 -39.97285 -38.49470 -36.16136 -35.01956 -34.21439 -33.42232 -32.36357 -30.89373 -29.78992 -28.80088 -26.90876 -24.58389 -23.27159 -23.04157 -22.69242 -20.92326 -19.59855 -19.27488 -18.52104 -17.97917 -17.12840 -16.26356 -16.23635 -15.78610 -15.67497 -15.11758 -14.85692 -14.38004 -14.30820 -14.03279 -13.70520 -13.65150 -13.29395 -13.04236 -12.79046 -12.69144 -12.42700 -11.83939 -11.66240 -11.54417 -11.30326 -11.29089 -11.01578 -10.93948 -10.83784 -10.36154 -10.23163 -10.19822 -9.87471 -9.64591 -9.45704 -9.09902 -8.55559 -8.30892 -8.01804 -7.73490 -6.17395 -4.27127 1.10559 1.31970 2.42236 2.88801 3.13345 3.21263 3.28667 3.30329 3.54464 3.94927 4.20824 4.28433 4.50206 4.54999 4.81183 4.87371 4.98513 5.13991 5.15146 5.16903 5.37903 5.44637 5.59200 5.67851 5.73622 6.05250 6.27535 6.34020 6.36623 6.38415 6.43850 6.61469 6.63052 6.95540 6.98198 7.07567 7.16552 7.29004 7.31865 7.38936 7.59378 7.80531 7.86863 7.91351 8.13353 8.66407 8.77486 9.16320 9.41081 10.87917 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021139 B = 0.002881 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.241485 B = 9716.896589 C =10210.446923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.129 4.129 3 C 0.287 3.713 4 H 0.050 0.950 5 C -0.536 4.536 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.902 3.098 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.717 5.717 14 C 0.691 3.309 15 O -0.573 6.573 16 N -0.696 5.696 17 C 0.216 3.784 18 C -0.176 4.176 19 C -0.063 4.063 20 C -0.155 4.155 21 C 0.177 3.823 22 C -0.153 4.153 23 N -0.659 5.659 24 C 0.522 3.478 25 O -0.535 6.535 26 C -0.139 4.139 27 C -0.070 4.070 28 H 0.021 0.979 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.031 0.969 32 H 0.100 0.900 33 H 0.265 0.735 34 H 0.386 0.614 35 H 0.404 0.596 36 H 0.127 0.873 37 H 0.129 0.871 38 H 0.146 0.854 39 H 0.412 0.588 40 H 0.106 0.894 41 H 0.103 0.897 42 H 0.078 0.922 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.147 8.343 -14.753 20.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.168 4.168 3 C 0.185 3.815 4 H 0.068 0.932 5 C -0.574 4.574 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.199 1.199 13 N -0.368 5.368 14 C 0.391 3.609 15 O -0.451 6.451 16 N -0.344 5.344 17 C 0.118 3.882 18 C -0.198 4.198 19 C -0.083 4.083 20 C -0.159 4.159 21 C 0.080 3.920 22 C -0.176 4.176 23 N -0.303 5.303 24 C 0.311 3.689 25 O -0.411 6.411 26 C -0.178 4.178 27 C -0.107 4.107 28 H 0.040 0.960 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.118 0.882 33 H 0.075 0.925 34 H 0.218 0.782 35 H 0.239 0.761 36 H 0.145 0.855 37 H 0.147 0.853 38 H 0.163 0.837 39 H 0.251 0.749 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.096 0.904 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -13.128 8.448 -13.174 20.427 hybrid contribution 2.019 -0.185 -0.294 2.049 sum -11.109 8.263 -13.468 19.315 Atomic orbital electron populations 1.21817 0.98251 0.97960 1.01253 1.21963 0.92685 0.99846 1.02278 1.18734 0.94052 0.88911 0.79830 0.93212 1.21204 0.90591 1.39219 1.06393 0.92083 1.24878 0.98649 0.94741 0.95362 1.69895 1.35175 1.37453 1.09284 0.86443 0.84742 0.77687 0.78193 1.20559 1.21041 1.19867 1.45862 1.12922 1.58636 1.19338 1.16138 0.83662 0.78786 0.82289 1.90921 1.51646 1.64340 1.38147 1.42943 1.20161 1.56084 1.15222 1.17212 0.86058 0.91207 0.93738 1.20804 0.96244 1.05086 0.97640 1.20498 0.94884 0.95663 0.97206 1.19359 0.98569 1.05369 0.92586 1.17389 0.93952 0.94387 0.86242 1.20814 0.97133 0.99027 1.00668 1.43613 1.10418 1.56381 1.19909 1.20749 0.82348 0.77499 0.88343 1.90774 1.75595 1.40271 1.34489 1.21692 0.98130 1.05214 0.92805 1.20336 0.93032 1.00655 0.96658 0.95957 0.93169 0.94314 0.95061 0.88235 0.92486 0.78173 0.76086 0.85545 0.85265 0.83663 0.74946 0.87566 0.87845 0.90351 0.89345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.99 8.51 37.16 0.32 -2.67 16 2 C -0.13 -3.04 5.45 -26.73 -0.15 -3.19 16 3 C 0.29 6.90 2.24 -69.09 -0.15 6.75 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.01 16 5 C -0.54 -13.62 8.73 -34.44 -0.30 -13.92 16 6 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 7 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 8 N -0.88 -24.13 11.30 55.43 0.63 -23.51 16 9 Si 0.90 20.12 29.54 -169.99 -5.02 15.10 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 N -0.72 -13.85 5.03 -59.81 -0.30 -14.15 16 14 C 0.69 12.81 6.87 -86.92 -0.60 12.21 16 15 O -0.57 -12.61 11.17 5.28 0.06 -12.55 16 16 N -0.70 -9.59 5.35 -14.24 -0.08 -9.67 16 17 C 0.22 2.88 6.28 -83.71 -0.53 2.35 16 18 C -0.18 -1.81 9.96 -39.35 -0.39 -2.20 16 19 C -0.06 -0.57 9.68 -39.65 -0.38 -0.95 16 20 C -0.16 -1.57 5.66 -104.41 -0.59 -2.16 16 21 C 0.18 2.21 6.50 -83.77 -0.54 1.67 16 22 C -0.15 -2.22 8.52 -39.21 -0.33 -2.55 16 23 N -0.66 -8.22 5.36 -10.02 -0.05 -8.27 16 24 C 0.52 6.57 7.72 -11.18 -0.09 6.48 16 25 O -0.53 -8.58 17.91 5.54 0.10 -8.48 16 26 C -0.14 -1.19 6.08 -28.03 -0.17 -1.36 16 27 C -0.07 -0.51 6.00 -27.93 -0.17 -0.68 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.05 1.19 7.84 -51.92 -0.41 0.78 16 30 H 0.04 0.83 5.64 -51.93 -0.29 0.54 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 33 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.39 6.35 8.56 -40.82 -0.35 6.00 16 35 H 0.40 4.16 8.83 -40.82 -0.36 3.80 16 36 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 38 H 0.15 2.46 6.42 -52.49 -0.34 2.12 16 39 H 0.41 5.01 8.83 -40.82 -0.36 4.65 16 40 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.09 0.45 8.06 -51.93 -0.42 0.03 16 LS Contribution 351.03 15.07 5.29 5.29 Total: -1.00 -31.94 351.03 -9.28 -41.21 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -5.73 Total: 13.58 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -4.17 Total: 1.44 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.20 Total: -55.59 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: 0.16 Total: -21.03 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.94 -9.28 -41.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157528905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.561 kcal (2) G-P(sol) polarization free energy of solvation -31.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds