Wall clock time and date at job start Tue Mar 31 2020 11:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47220 * 2 1 4 4 H 1.09004 * 109.46466 * 55.00306 * 3 2 1 5 5 C 1.50696 * 109.46814 * 175.00237 * 3 2 1 6 6 H 1.07999 * 119.99726 * 120.00815 * 5 3 2 7 7 C 1.37872 * 120.00239 * 300.00192 * 5 3 2 8 8 N 1.31520 * 119.99996 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 119.99945 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47256 * 89.99912 * 9 7 5 11 11 H 1.48500 * 109.47031 * 209.99861 * 9 7 5 12 12 H 1.48494 * 109.46899 * 329.99990 * 9 7 5 13 13 N 1.46496 * 109.47227 * 295.00670 * 3 2 1 14 14 C 1.34773 * 120.00453 * 84.99791 * 13 3 2 15 15 O 1.21596 * 119.99563 * 0.02562 * 14 13 3 16 16 N 1.34774 * 120.00507 * 180.02562 * 14 13 3 17 17 C 1.39947 * 120.00268 * 185.31806 * 16 14 13 18 18 C 1.38935 * 120.02862 * 213.28634 * 17 16 14 19 19 C 1.38156 * 120.07138 * 180.02562 * 18 17 16 20 20 C 1.38145 * 120.12518 * 359.95803 * 19 18 17 21 21 C 1.38921 * 120.08208 * 0.02562 * 20 19 18 22 22 C 1.38730 * 120.03005 * 33.26198 * 17 16 14 23 23 N 1.39834 * 119.93480 * 179.97438 * 21 20 19 24 24 C 1.34558 * 120.45873 * 18.51534 * 23 21 20 25 25 O 1.21295 * 119.61655 * 180.80434 * 24 23 21 26 26 C 1.50493 * 120.76631 * 0.80642 * 24 23 21 27 27 C 1.50686 * 120.10853 * 179.97438 * 20 19 18 28 28 H 1.08995 * 109.47176 * 180.02562 * 1 2 3 29 29 H 1.09011 * 109.46616 * 299.99525 * 1 2 3 30 30 H 1.08995 * 109.47099 * 59.99157 * 1 2 3 31 31 H 1.08999 * 109.46213 * 240.00332 * 2 1 3 32 32 H 1.08995 * 109.47099 * 120.00843 * 2 1 3 33 33 H 0.96997 * 119.99618 * 180.02562 * 8 7 5 34 34 H 0.96998 * 119.99589 * 264.99808 * 13 3 2 35 35 H 0.97001 * 119.99717 * 5.31402 * 16 14 13 36 36 H 1.07999 * 119.96679 * 0.02562 * 18 17 16 37 37 H 1.08004 * 119.92963 * 179.97438 * 19 18 17 38 38 H 1.07998 * 120.07875 * 0.26958 * 22 17 16 39 39 H 0.96997 * 119.77065 * 198.52174 * 23 21 20 40 40 H 1.09005 * 109.39823 * 204.65372 * 26 24 23 41 41 H 1.08996 * 109.39802 * 84.91954 * 26 24 23 42 42 H 1.09003 * 109.46403 * 266.07550 * 27 20 19 43 43 H 1.08998 * 109.46081 * 26.05858 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8782 1.2278 8 7 3.4063 0.3373 2.1732 9 14 6.0051 0.8810 1.3815 10 1 6.4419 2.1139 2.0846 11 1 6.4397 -0.3101 2.1545 12 1 6.6136 0.8415 0.0275 13 7 1.6524 2.0976 -1.2517 14 6 0.4352 2.6645 -1.3668 15 8 -0.3411 2.6327 -0.4314 16 7 0.0783 3.2667 -2.5185 17 6 -1.1394 3.9513 -2.6021 18 6 -1.8449 3.9715 -3.7988 19 6 -3.0469 4.6475 -3.8825 20 6 -3.5512 5.3046 -2.7769 21 6 -2.8507 5.2880 -1.5774 22 6 -1.6433 4.6101 -1.4901 23 7 -3.3638 5.9546 -0.4604 24 6 -4.6654 6.2910 -0.4052 25 8 -5.0912 6.8820 0.5647 26 6 -5.5991 5.9426 -1.5328 27 6 -4.8619 6.0424 -2.8688 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 1.8932 -0.5138 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.8294 -0.0605 2.9501 34 1 2.2719 2.1232 -1.9977 35 1 0.6656 3.2255 -3.2895 36 1 -1.4534 3.4581 -4.6646 37 1 -3.5932 4.6620 -4.8140 38 1 -1.0947 4.5992 -0.5598 39 1 -2.7773 6.1761 0.2797 40 1 -6.4418 6.6340 -1.5319 41 1 -5.9668 4.9255 -1.3972 42 1 -4.6732 7.0904 -3.1019 43 1 -5.4734 5.5998 -3.6550 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157528905.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:50 Heat of formation + Delta-G solvation = -70.681871 kcal Electronic energy + Delta-G solvation = -26247.741598 eV Core-core repulsion = 22484.216538 eV Total energy + Delta-G solvation = -3763.525059 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.08377 -41.27936 -39.61176 -37.52689 -36.48361 -35.22339 -34.59140 -34.04346 -32.60547 -30.72513 -29.88075 -28.69122 -25.56525 -24.86944 -24.05718 -23.75155 -22.35339 -21.34940 -20.25896 -19.88433 -19.12066 -18.15825 -17.94518 -17.29286 -17.06210 -16.79392 -16.55519 -16.16865 -15.83914 -15.48516 -15.09070 -14.96766 -14.58058 -14.56479 -14.36060 -14.07206 -13.78378 -13.56611 -13.46708 -13.18756 -12.87125 -12.72271 -12.64973 -12.55586 -12.16911 -12.06556 -11.99826 -11.91706 -11.58047 -11.21414 -11.08239 -10.97283 -10.81974 -10.54247 -9.69456 -9.29257 -8.75314 -8.16646 -6.33753 0.20051 0.40799 1.44906 1.45002 1.47520 1.55557 1.78154 2.05548 2.24403 2.42038 2.90274 3.13290 3.36862 3.53113 3.81801 3.85253 4.10600 4.32618 4.35839 4.39116 4.48881 4.49612 4.57328 4.73034 4.78593 4.88640 4.98057 5.04101 5.10364 5.14720 5.23596 5.38346 5.41782 5.44249 5.54399 5.54812 5.60824 5.67442 5.77089 5.87578 5.99636 6.16980 6.23690 6.30698 6.74785 6.88486 7.27146 7.35166 7.73319 8.88732 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.021139 B = 0.002881 C = 0.002742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.241485 B = 9716.896589 C =10210.446923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.121 4.121 3 C 0.297 3.703 4 H -0.003 1.003 5 C -0.547 4.547 6 H 0.073 0.927 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.259 1.259 13 N -0.714 5.714 14 C 0.691 3.309 15 O -0.613 6.613 16 N -0.677 5.677 17 C 0.186 3.814 18 C -0.161 4.161 19 C -0.051 4.051 20 C -0.147 4.147 21 C 0.159 3.841 22 C -0.179 4.179 23 N -0.665 5.665 24 C 0.514 3.486 25 O -0.581 6.581 26 C -0.134 4.134 27 C -0.065 4.065 28 H 0.043 0.957 29 H 0.021 0.979 30 H 0.043 0.957 31 H 0.043 0.957 32 H 0.071 0.929 33 H 0.264 0.736 34 H 0.402 0.598 35 H 0.423 0.577 36 H 0.158 0.842 37 H 0.177 0.823 38 H 0.105 0.895 39 H 0.405 0.595 40 H 0.126 0.874 41 H 0.114 0.886 42 H 0.090 0.910 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.984 8.488 -19.058 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.160 4.160 3 C 0.193 3.807 4 H 0.015 0.985 5 C -0.585 4.585 6 H 0.091 0.909 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.183 1.183 13 N -0.367 5.367 14 C 0.391 3.609 15 O -0.493 6.493 16 N -0.327 5.327 17 C 0.090 3.910 18 C -0.183 4.183 19 C -0.070 4.070 20 C -0.150 4.150 21 C 0.063 3.937 22 C -0.202 4.202 23 N -0.307 5.307 24 C 0.305 3.695 25 O -0.460 6.460 26 C -0.173 4.173 27 C -0.101 4.101 28 H 0.062 0.938 29 H 0.041 0.959 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.237 0.763 35 H 0.261 0.739 36 H 0.176 0.824 37 H 0.194 0.806 38 H 0.123 0.877 39 H 0.242 0.758 40 H 0.144 0.856 41 H 0.132 0.868 42 H 0.108 0.892 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.958 8.614 -17.583 24.046 hybrid contribution 2.196 -0.155 1.014 2.424 sum -11.762 8.458 -16.570 22.010 Atomic orbital electron populations 1.21634 0.97107 0.98845 1.00087 1.21802 0.93578 0.99292 1.01336 1.18244 0.93405 0.88794 0.80209 0.98516 1.21565 0.91336 1.38860 1.06728 0.90888 1.25756 1.03228 0.94413 0.95061 1.70054 1.37052 1.38374 1.09834 0.85381 0.79202 0.77309 0.78653 1.20652 1.21066 1.18272 1.45435 1.13846 1.58957 1.18441 1.16225 0.82906 0.78646 0.83102 1.90908 1.52692 1.65611 1.40066 1.42553 1.20899 1.55109 1.14101 1.17484 0.86411 0.92289 0.94855 1.21175 0.96037 1.04182 0.96869 1.21038 0.94164 0.93485 0.98321 1.19829 0.99208 1.04458 0.91536 1.17568 0.93882 0.94966 0.87312 1.20648 0.98348 1.01347 0.99906 1.43765 1.10721 1.56177 1.20026 1.21658 0.82479 0.76457 0.88943 1.90744 1.76224 1.42539 1.36543 1.21796 0.97644 1.06163 0.91695 1.20475 0.91660 1.01291 0.96712 0.93841 0.95927 0.93840 0.93852 0.91061 0.92632 0.76277 0.73892 0.82441 0.80612 0.87708 0.75846 0.85620 0.86843 0.89192 0.85353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.40 8.51 71.98 0.61 -4.79 16 2 C -0.12 -5.87 5.45 30.60 0.17 -5.71 16 3 C 0.30 14.90 2.24 44.25 0.10 15.00 16 4 H 0.00 -0.18 7.58 -2.39 -0.02 -0.20 16 5 C -0.55 -28.22 8.73 25.60 0.22 -28.00 16 6 H 0.07 3.50 7.74 -2.91 -0.02 3.48 16 7 C 0.02 0.83 5.29 84.65 0.45 1.28 16 8 N -0.91 -51.95 11.30 21.45 0.24 -51.71 16 9 Si 0.97 41.49 29.54 68.60 2.03 43.52 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 12 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 13 N -0.71 -28.09 5.03 -461.41 -2.32 -30.41 16 14 C 0.69 26.36 6.87 179.06 1.23 27.59 16 15 O -0.61 -28.68 11.17 -4.02 -0.04 -28.72 16 16 N -0.68 -18.28 5.35 -317.22 -1.70 -19.97 16 17 C 0.19 4.80 6.28 38.13 0.24 5.04 16 18 C -0.16 -2.70 9.96 22.42 0.22 -2.48 16 19 C -0.05 -0.66 9.68 22.23 0.22 -0.45 16 20 C -0.15 -2.49 5.66 -19.73 -0.11 -2.60 16 21 C 0.16 3.97 6.50 38.15 0.25 4.21 16 22 C -0.18 -5.44 8.52 22.51 0.19 -5.25 16 23 N -0.66 -17.49 5.36 -304.11 -1.63 -19.12 16 24 C 0.51 13.05 7.72 87.63 0.68 13.73 16 25 O -0.58 -19.38 17.91 -3.07 -0.06 -19.44 16 26 C -0.13 -1.95 6.08 29.75 0.18 -1.77 16 27 C -0.06 -0.66 6.00 29.82 0.18 -0.48 16 28 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.02 1.10 7.84 -2.38 -0.02 1.08 16 30 H 0.04 1.90 5.64 -2.39 -0.01 1.88 16 31 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.07 3.90 5.95 -2.39 -0.01 3.89 16 33 H 0.26 14.29 8.31 -92.71 -0.77 13.51 16 34 H 0.40 12.99 8.56 -92.71 -0.79 12.19 16 35 H 0.42 7.92 8.83 -92.71 -0.82 7.10 16 36 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 37 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 38 H 0.10 3.99 6.42 -2.91 -0.02 3.97 16 39 H 0.40 11.14 8.83 -92.71 -0.82 10.32 16 40 H 0.13 1.38 8.14 -2.38 -0.02 1.36 16 41 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.13 0.41 8.06 -2.39 -0.02 0.39 16 Total: -1.00 -75.60 351.03 -0.01 -75.60 By element: Atomic # 1 Polarization: 36.27 SS G_CDS: -1.35 Total: 34.92 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: 4.82 Total: 15.33 kcal Atomic # 7 Polarization: -115.81 SS G_CDS: -5.40 Total: -121.21 kcal Atomic # 8 Polarization: -48.06 SS G_CDS: -0.10 Total: -48.16 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -75.60 -0.01 -75.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157528905.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.920 kcal (2) G-P(sol) polarization free energy of solvation -75.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds