Wall clock time and date at job start Tue Mar 31 2020 12:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47169 * 2 1 4 4 O 1.42895 * 109.46829 * 239.99646 * 2 1 3 5 5 C 1.35779 * 116.99889 * 204.61984 * 4 2 1 6 6 C 1.38637 * 120.07815 * 354.43272 * 5 4 2 7 7 C 1.38048 * 120.16611 * 179.71940 * 6 5 4 8 8 C 1.39068 * 120.32635 * 0.56190 * 7 6 5 9 9 N 1.40165 * 119.92304 * 179.74264 * 8 7 6 10 10 C 1.34783 * 120.00093 * 146.77412 * 9 8 7 11 11 O 1.21599 * 119.99595 * 354.66754 * 10 9 8 12 12 N 1.34776 * 120.00160 * 174.66908 * 10 9 8 13 13 C 1.46495 * 119.99758 * 0.02562 * 12 10 9 14 14 C 1.46495 * 119.99768 * 180.02562 * 12 10 9 15 15 C 1.50705 * 109.47172 * 89.99903 * 14 12 10 16 16 H 1.07998 * 119.99914 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00005 * 179.97438 * 15 14 12 18 18 N 1.31523 * 120.00044 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00195 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46818 * 59.99661 * 19 17 15 21 21 H 1.48500 * 109.47183 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47178 * 300.00423 * 19 17 15 23 23 C 1.38406 * 120.15124 * 359.71664 * 8 7 6 24 24 C 1.39684 * 119.83143 * 0.02562 * 23 8 7 25 25 C 1.43198 * 120.16205 * 179.97438 * 24 23 8 26 26 N 4.92458 * 98.81609 * 240.80776 * 2 1 3 27 27 H 1.08997 * 109.46839 * 59.99892 * 1 2 3 28 28 H 1.09003 * 109.46957 * 300.00581 * 1 2 3 29 29 H 1.08995 * 109.46978 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46721 * 119.99456 * 2 1 3 31 31 H 1.09004 * 109.46795 * 300.00159 * 3 2 1 32 32 H 1.08997 * 109.46981 * 59.99842 * 3 2 1 33 33 H 1.08996 * 109.46926 * 180.02562 * 3 2 1 34 34 H 1.08004 * 119.91359 * 359.97438 * 6 5 4 35 35 H 1.08006 * 119.83824 * 180.27656 * 7 6 5 36 36 H 0.97003 * 120.00332 * 326.77719 * 9 8 7 37 37 H 1.08997 * 109.47524 * 90.00399 * 13 12 10 38 38 H 1.09002 * 109.46962 * 210.00366 * 13 12 10 39 39 H 1.09000 * 109.47525 * 329.99620 * 13 12 10 40 40 H 1.08998 * 109.46861 * 210.00027 * 14 12 10 41 41 H 1.09000 * 109.47393 * 329.99676 * 14 12 10 42 42 H 0.96998 * 119.99537 * 179.97438 * 18 17 15 43 43 H 1.08001 * 120.08273 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 3.2487 -1.2175 -1.1005 6 6 4.0402 -1.0079 0.0182 7 6 5.3014 -1.5647 0.0899 8 6 5.7922 -2.3295 -0.9628 9 7 7.0760 -2.8864 -0.8833 10 6 7.3312 -4.0769 -1.4614 11 8 6.4270 -4.7132 -1.9676 12 7 8.5885 -4.5621 -1.4785 13 6 9.6776 -3.7957 -0.8682 14 6 8.8658 -5.8558 -2.1074 15 6 9.1961 -5.6463 -3.5628 16 1 9.1987 -4.6493 -3.9779 17 6 9.4950 -6.7275 -4.3644 18 7 9.4923 -7.9417 -3.8589 19 14 9.9037 -6.4680 -6.1686 20 1 11.0987 -5.5941 -6.2846 21 1 10.1861 -7.7793 -6.8057 22 1 8.7517 -5.8241 -6.8495 23 6 5.0156 -2.5426 -2.0884 24 6 3.7365 -1.9867 -2.1655 25 6 2.9272 -2.2021 -3.3271 26 7 2.2848 -2.3735 -4.2483 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 0.8901 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 3.6676 -0.4109 0.8375 35 1 5.9118 -1.4017 0.9659 36 1 7.7809 -2.4151 -0.4122 37 1 9.7777 -4.0780 0.1799 38 1 10.6095 -4.0082 -1.3923 39 1 9.4562 -2.7307 -0.9381 40 1 9.7109 -6.3290 -1.6075 41 1 7.9882 -6.4967 -2.0226 42 1 9.7022 -8.7024 -4.4230 43 1 5.3977 -3.1371 -2.9051 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000157850039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:29 Heat of formation + Delta-G solvation = -0.862447 kcal Electronic energy + Delta-G solvation = -25793.169121 eV Core-core repulsion = 22032.671659 eV Total energy + Delta-G solvation = -3760.497462 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.82955 -39.80722 -37.89328 -36.31300 -34.98862 -34.34295 -33.27252 -32.49584 -31.38712 -29.03285 -27.72777 -27.50700 -25.82077 -24.27679 -23.60529 -22.69629 -21.15787 -19.57178 -19.34541 -18.19696 -17.39104 -16.58493 -16.22815 -16.05239 -15.81289 -15.01787 -14.91824 -14.72820 -14.45573 -13.93767 -13.88602 -13.44749 -13.22943 -13.11497 -12.97009 -12.89726 -12.81760 -12.68196 -12.49194 -12.27104 -12.15075 -12.08458 -11.88743 -11.54562 -11.24546 -11.21276 -10.95135 -10.93596 -10.58276 -10.17588 -9.82460 -9.67730 -9.42302 -9.03525 -8.44271 -7.90401 -7.57430 -6.05664 -4.10658 0.73884 1.26736 2.80559 2.85431 2.96462 3.14520 3.32095 3.37117 3.40884 3.70361 3.95723 3.99567 4.37009 4.38206 4.49575 4.50898 4.62220 4.74331 4.82025 5.04153 5.15757 5.25429 5.28761 5.33653 5.38415 5.40192 5.45241 5.66187 5.74192 5.78345 5.79524 5.80107 5.98630 6.06451 6.17641 6.38403 6.71955 6.91370 7.16781 7.30094 7.43872 7.59816 7.69684 7.91413 8.20220 8.49135 8.89338 9.14979 9.54834 11.02222 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.002971 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.427689 B = 9422.711612 C =10419.951040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 C -0.182 4.182 4 O -0.306 6.306 5 C 0.152 3.848 6 C -0.192 4.192 7 C -0.085 4.085 8 C 0.147 3.853 9 N -0.695 5.695 10 C 0.696 3.304 11 O -0.567 6.567 12 N -0.610 5.610 13 C 0.082 3.918 14 C 0.259 3.741 15 C -0.529 4.529 16 H 0.057 0.943 17 C 0.062 3.938 18 N -0.894 5.894 19 Si 0.898 3.102 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.276 1.276 23 C -0.035 4.035 24 C -0.042 4.042 25 C 0.270 3.730 26 N -0.422 5.422 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.141 0.859 35 H 0.134 0.866 36 H 0.404 0.596 37 H 0.046 0.954 38 H 0.079 0.921 39 H 0.052 0.948 40 H 0.035 0.965 41 H 0.046 0.954 42 H 0.264 0.736 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.065 19.319 14.915 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.020 3.980 3 C -0.239 4.239 4 O -0.219 6.219 5 C 0.103 3.897 6 C -0.211 4.211 7 C -0.107 4.107 8 C 0.051 3.949 9 N -0.345 5.345 10 C 0.397 3.603 11 O -0.443 6.443 12 N -0.345 5.345 13 C -0.062 4.062 14 C 0.140 3.860 15 C -0.568 4.568 16 H 0.075 0.925 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.725 3.275 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.058 4.058 24 C -0.047 4.047 25 C -0.045 4.045 26 N -0.098 5.098 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.158 0.842 35 H 0.152 0.848 36 H 0.241 0.759 37 H 0.064 0.936 38 H 0.098 0.902 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.064 0.936 42 H 0.074 0.926 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.718 18.290 12.876 24.803 hybrid contribution 1.105 0.426 -0.165 1.196 sum -9.613 18.716 12.710 24.581 Atomic orbital electron populations 1.21862 0.92405 1.03382 1.03055 1.22503 0.95556 0.92674 0.87305 1.22410 1.02405 0.95852 1.03245 1.86146 1.28703 1.68059 1.39032 1.18751 0.84809 0.92750 0.93417 1.20894 0.95293 1.06369 0.98580 1.20843 0.95194 0.97939 0.96683 1.17186 0.86536 0.97721 0.93482 1.42954 1.10212 1.21692 1.59664 1.15956 0.84318 0.80272 0.79722 1.90927 1.43855 1.58867 1.50685 1.47509 1.04129 1.23902 1.58991 1.21615 0.92513 0.94592 0.97508 1.19272 0.97484 0.77230 0.92001 1.21397 1.47323 0.93473 0.94572 0.92490 1.24920 0.95356 0.94956 0.98767 1.69919 1.48780 0.98268 1.36359 0.86567 0.78827 0.77316 0.84773 1.20267 1.21159 1.20126 1.21240 0.90945 0.95780 0.97883 1.15113 0.94009 1.05444 0.90086 1.25245 0.93124 0.93439 0.92717 1.81171 1.09139 1.08743 1.10755 0.91449 0.90431 0.91506 0.90443 0.91361 0.90937 0.91472 0.84185 0.84784 0.75932 0.93590 0.90204 0.92977 0.94715 0.93586 0.92607 0.82464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.56 37.16 0.36 -0.59 16 2 C 0.08 0.55 2.85 -26.73 -0.08 0.48 16 3 C -0.18 -1.06 9.16 37.16 0.34 -0.72 16 4 O -0.31 -3.46 9.23 -19.05 -0.18 -3.63 16 5 C 0.15 1.78 6.60 -38.72 -0.26 1.53 16 6 C -0.19 -1.74 8.21 -39.50 -0.32 -2.06 16 7 C -0.08 -0.81 9.94 -39.34 -0.39 -1.20 16 8 C 0.15 1.97 6.28 -83.68 -0.53 1.44 16 9 N -0.69 -9.83 5.18 -14.23 -0.07 -9.90 16 10 C 0.70 13.80 8.01 -86.91 -0.70 13.10 16 11 O -0.57 -13.77 13.60 5.28 0.07 -13.70 16 12 N -0.61 -12.23 2.86 -188.74 -0.54 -12.77 16 13 C 0.08 1.16 10.16 59.84 0.61 1.76 16 14 C 0.26 6.57 5.16 -5.19 -0.03 6.55 16 15 C -0.53 -14.70 9.39 -34.44 -0.32 -15.02 16 16 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 17 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 18 N -0.89 -26.35 13.29 55.43 0.74 -25.61 16 19 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 C -0.04 -0.55 8.36 -38.98 -0.33 -0.88 16 24 C -0.04 -0.60 5.75 -106.72 -0.61 -1.22 16 25 C 0.27 4.51 14.86 -22.47 -0.33 4.17 16 26 N -0.42 -7.79 18.54 41.84 0.78 -7.01 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.47 6.34 -51.93 -0.33 0.14 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.39 6.86 -51.93 -0.36 0.04 16 34 H 0.14 0.85 5.40 -52.48 -0.28 0.57 16 35 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 36 H 0.40 4.20 6.63 -40.82 -0.27 3.93 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 39 H 0.05 0.56 6.45 -51.93 -0.33 0.23 16 40 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 41 H 0.05 1.32 7.42 -51.93 -0.39 0.94 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.16 2.96 6.39 -52.49 -0.34 2.62 16 LS Contribution 367.95 15.07 5.54 5.54 Total: -1.00 -34.89 367.95 -7.00 -41.89 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -5.64 Total: -0.66 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -2.69 Total: 9.01 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.90 Total: -55.30 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.10 Total: -17.33 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.89 -7.00 -41.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157850039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.032 kcal (2) G-P(sol) polarization free energy of solvation -34.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds