Wall clock time and date at job start Tue Mar 31 2020 12:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53000 * 109.47169 * 2 1 4 4 O 1.42895 * 109.46829 * 239.99646 * 2 1 3 5 5 C 1.35779 * 116.99889 * 204.61984 * 4 2 1 6 6 C 1.38637 * 120.07815 * 354.43272 * 5 4 2 7 7 C 1.38048 * 120.16611 * 179.71940 * 6 5 4 8 8 C 1.39068 * 120.32635 * 0.56190 * 7 6 5 9 9 N 1.40165 * 119.92304 * 179.74264 * 8 7 6 10 10 C 1.34783 * 120.00093 * 146.77412 * 9 8 7 11 11 O 1.21599 * 119.99595 * 354.66754 * 10 9 8 12 12 N 1.34776 * 120.00160 * 174.66908 * 10 9 8 13 13 C 1.46495 * 119.99758 * 0.02562 * 12 10 9 14 14 C 1.46495 * 119.99768 * 180.02562 * 12 10 9 15 15 C 1.50705 * 109.47172 * 89.99903 * 14 12 10 16 16 H 1.07998 * 119.99914 * 359.97438 * 15 14 12 17 17 C 1.37875 * 120.00005 * 179.97438 * 15 14 12 18 18 N 1.31523 * 120.00044 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00195 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46818 * 59.99661 * 19 17 15 21 21 H 1.48500 * 109.47183 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47178 * 300.00423 * 19 17 15 23 23 C 1.38406 * 120.15124 * 359.71664 * 8 7 6 24 24 C 1.39684 * 119.83143 * 0.02562 * 23 8 7 25 25 C 1.43198 * 120.16205 * 179.97438 * 24 23 8 26 26 N 4.92458 * 98.81609 * 240.80776 * 2 1 3 27 27 H 1.08997 * 109.46839 * 59.99892 * 1 2 3 28 28 H 1.09003 * 109.46957 * 300.00581 * 1 2 3 29 29 H 1.08995 * 109.46978 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46721 * 119.99456 * 2 1 3 31 31 H 1.09004 * 109.46795 * 300.00159 * 3 2 1 32 32 H 1.08997 * 109.46981 * 59.99842 * 3 2 1 33 33 H 1.08996 * 109.46926 * 180.02562 * 3 2 1 34 34 H 1.08004 * 119.91359 * 359.97438 * 6 5 4 35 35 H 1.08006 * 119.83824 * 180.27656 * 7 6 5 36 36 H 0.97003 * 120.00332 * 326.77719 * 9 8 7 37 37 H 1.08997 * 109.47524 * 90.00399 * 13 12 10 38 38 H 1.09002 * 109.46962 * 210.00366 * 13 12 10 39 39 H 1.09000 * 109.47525 * 329.99620 * 13 12 10 40 40 H 1.08998 * 109.46861 * 210.00027 * 14 12 10 41 41 H 1.09000 * 109.47393 * 329.99676 * 14 12 10 42 42 H 0.96998 * 119.99537 * 179.97438 * 18 17 15 43 43 H 1.08001 * 120.08273 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 -1.1667 5 6 3.2487 -1.2175 -1.1005 6 6 4.0402 -1.0079 0.0182 7 6 5.3014 -1.5647 0.0899 8 6 5.7922 -2.3295 -0.9628 9 7 7.0760 -2.8864 -0.8833 10 6 7.3312 -4.0769 -1.4614 11 8 6.4270 -4.7132 -1.9676 12 7 8.5885 -4.5621 -1.4785 13 6 9.6776 -3.7957 -0.8682 14 6 8.8658 -5.8558 -2.1074 15 6 9.1961 -5.6463 -3.5628 16 1 9.1987 -4.6493 -3.9779 17 6 9.4950 -6.7275 -4.3644 18 7 9.4923 -7.9417 -3.8589 19 14 9.9037 -6.4680 -6.1686 20 1 11.0987 -5.5941 -6.2846 21 1 10.1861 -7.7793 -6.8057 22 1 8.7517 -5.8241 -6.8495 23 6 5.0156 -2.5426 -2.0884 24 6 3.7365 -1.9867 -2.1655 25 6 2.9272 -2.2021 -3.3271 26 7 2.2848 -2.3735 -4.2483 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5138 0.8901 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1301 1.4424 -0.0005 34 1 3.6676 -0.4109 0.8375 35 1 5.9118 -1.4017 0.9659 36 1 7.7809 -2.4151 -0.4122 37 1 9.7777 -4.0780 0.1799 38 1 10.6095 -4.0082 -1.3923 39 1 9.4562 -2.7307 -0.9381 40 1 9.7109 -6.3290 -1.6075 41 1 7.9882 -6.4967 -2.0226 42 1 9.7022 -8.7024 -4.4230 43 1 5.3977 -3.1371 -2.9051 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000157850039.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:28 Heat of formation + Delta-G solvation = -23.982776 kcal Electronic energy + Delta-G solvation = -25794.171694 eV Core-core repulsion = 22032.671659 eV Total energy + Delta-G solvation = -3761.500035 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.88450 -41.00795 -38.94808 -37.64383 -36.60403 -35.60193 -34.61768 -33.87916 -32.36015 -30.36209 -29.19240 -28.08400 -27.27752 -25.40811 -25.02548 -23.92218 -22.07298 -20.82683 -20.50832 -19.16815 -18.70080 -18.61620 -17.46117 -17.13457 -16.66136 -16.60734 -16.28759 -15.84956 -15.57416 -15.24253 -14.97435 -14.78789 -14.44984 -14.30836 -14.16760 -14.03686 -13.78129 -13.65397 -13.51252 -13.41488 -13.27476 -13.14745 -13.05274 -12.80808 -12.76559 -12.53003 -12.32880 -12.17455 -11.93207 -11.73014 -11.58755 -11.08651 -10.82527 -10.62987 -10.06720 -9.47253 -8.71010 -8.20828 -6.35260 -0.26195 0.28722 1.35505 1.40056 1.46321 1.53641 1.71800 1.86176 2.12215 2.25759 2.39531 2.81918 2.84601 3.07971 3.16122 3.78284 3.86796 3.98704 4.09761 4.16776 4.21635 4.34164 4.36404 4.60651 4.71132 4.74930 4.77100 4.89529 4.90546 4.91739 4.99773 5.02715 5.11834 5.19062 5.27581 5.29712 5.34906 5.39705 5.56592 5.80452 5.82959 6.07658 6.12770 6.31259 6.46508 6.73857 7.10831 7.31834 7.67470 8.84855 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.019089 B = 0.002971 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.427689 B = 9422.711612 C =10419.951040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.064 3.936 3 C -0.179 4.179 4 O -0.328 6.328 5 C 0.166 3.834 6 C -0.174 4.174 7 C -0.048 4.048 8 C 0.124 3.876 9 N -0.669 5.669 10 C 0.691 3.309 11 O -0.624 6.624 12 N -0.619 5.619 13 C 0.076 3.924 14 C 0.275 3.725 15 C -0.541 4.541 16 H 0.052 0.948 17 C 0.010 3.990 18 N -0.927 5.927 19 Si 0.961 3.039 20 H -0.258 1.258 21 H -0.279 1.279 22 H -0.284 1.284 23 C -0.056 4.056 24 C -0.071 4.071 25 C 0.281 3.719 26 N -0.471 5.471 27 H 0.055 0.945 28 H 0.106 0.894 29 H 0.055 0.945 30 H 0.101 0.899 31 H 0.053 0.947 32 H 0.098 0.902 33 H 0.071 0.929 34 H 0.186 0.814 35 H 0.184 0.816 36 H 0.426 0.574 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.091 0.909 40 H 0.031 0.969 41 H -0.001 1.001 42 H 0.267 0.733 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.421 22.673 18.172 30.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.009 3.991 3 C -0.236 4.236 4 O -0.242 6.242 5 C 0.116 3.884 6 C -0.193 4.193 7 C -0.069 4.069 8 C 0.028 3.972 9 N -0.322 5.322 10 C 0.393 3.607 11 O -0.504 6.504 12 N -0.354 5.354 13 C -0.066 4.066 14 C 0.154 3.846 15 C -0.580 4.580 16 H 0.070 0.930 17 C -0.190 4.190 18 N -0.567 5.567 19 Si 0.786 3.214 20 H -0.182 1.182 21 H -0.204 1.204 22 H -0.210 1.210 23 C -0.080 4.080 24 C -0.076 4.076 25 C -0.032 4.032 26 N -0.148 5.148 27 H 0.074 0.926 28 H 0.125 0.875 29 H 0.074 0.926 30 H 0.119 0.881 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.090 0.910 34 H 0.203 0.797 35 H 0.201 0.799 36 H 0.267 0.733 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.049 0.951 41 H 0.017 0.983 42 H 0.076 0.924 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -10.049 21.731 16.188 28.901 hybrid contribution 0.791 -0.507 -1.037 1.399 sum -9.257 21.225 15.151 27.672 Atomic orbital electron populations 1.21923 0.92019 1.02939 1.03922 1.22931 0.96025 0.93559 0.86597 1.22414 1.02658 0.94615 1.03924 1.86159 1.28396 1.68089 1.41534 1.18850 0.85347 0.91188 0.92982 1.21368 0.94362 1.05337 0.98228 1.21292 0.95263 0.94172 0.96167 1.17391 0.86170 0.99381 0.94214 1.42489 1.11397 1.19639 1.58662 1.16153 0.83509 0.81470 0.79612 1.90898 1.45565 1.60915 1.52989 1.47338 1.05937 1.22916 1.59208 1.21940 0.90120 0.96049 0.98501 1.18684 0.94954 0.79445 0.91552 1.21702 1.46958 0.93274 0.96038 0.92994 1.25780 0.95286 0.94727 1.03163 1.70031 1.49685 0.99018 1.37947 0.85569 0.78791 0.77695 0.79362 1.18226 1.20364 1.20963 1.20881 0.92151 0.96812 0.98121 1.15150 0.93783 1.08000 0.90648 1.25832 0.92452 0.92173 0.92776 1.81139 1.10852 1.10659 1.12114 0.92612 0.87547 0.92631 0.88136 0.92740 0.88296 0.90973 0.79738 0.79880 0.73339 0.90518 0.91160 0.89096 0.95085 0.98252 0.92437 0.87085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.56 71.99 0.69 -0.87 16 2 C 0.06 0.71 2.85 30.60 0.09 0.80 16 3 C -0.18 -1.36 9.16 71.98 0.66 -0.70 16 4 O -0.33 -6.86 9.23 -91.07 -0.84 -7.70 16 5 C 0.17 3.57 6.60 22.83 0.15 3.72 16 6 C -0.17 -2.29 8.21 22.32 0.18 -2.11 16 7 C -0.05 -0.67 9.94 22.42 0.22 -0.45 16 8 C 0.12 3.10 6.28 38.05 0.24 3.34 16 9 N -0.67 -17.74 5.18 -317.18 -1.64 -19.38 16 10 C 0.69 27.89 8.01 179.05 1.43 29.33 16 11 O -0.62 -32.23 13.60 -4.03 -0.05 -32.28 16 12 N -0.62 -25.04 2.86 -869.31 -2.48 -27.52 16 13 C 0.08 1.97 10.16 127.77 1.30 3.27 16 14 C 0.28 14.58 5.16 85.64 0.44 15.02 16 15 C -0.54 -31.08 9.39 25.60 0.24 -30.83 16 16 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 17 C 0.01 0.55 5.46 84.65 0.46 1.02 16 18 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 19 Si 0.96 45.68 29.54 68.60 2.03 47.71 16 20 H -0.26 -11.39 7.11 99.48 0.71 -10.69 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 23 C -0.06 -1.83 8.36 22.66 0.19 -1.64 16 24 C -0.07 -2.11 5.75 -21.22 -0.12 -2.23 16 25 C 0.28 10.08 14.86 88.33 1.31 11.39 16 26 N -0.47 -18.69 18.54 19.00 0.35 -18.34 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.67 6.34 -2.38 -0.02 0.66 16 31 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.07 0.49 6.86 -2.39 -0.02 0.47 16 34 H 0.19 0.88 5.40 -2.91 -0.02 0.86 16 35 H 0.18 0.90 8.06 -2.91 -0.02 0.88 16 36 H 0.43 7.16 6.63 -92.71 -0.61 6.54 16 37 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 39 H 0.09 1.63 6.45 -2.39 -0.02 1.61 16 40 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 41 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 42 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.11 4.65 6.39 -2.91 -0.02 4.63 16 Total: -1.00 -85.08 367.95 5.57 -79.52 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: 0.44 Total: 4.94 kcal Atomic # 6 Polarization: 21.57 SS G_CDS: 7.49 Total: 29.06 kcal Atomic # 7 Polarization: -117.74 SS G_CDS: -3.49 Total: -121.23 kcal Atomic # 8 Polarization: -39.09 SS G_CDS: -0.90 Total: -39.99 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -85.08 5.57 -79.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000157850039.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.534 kcal (2) G-P(sol) polarization free energy of solvation -85.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.517 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds