Wall clock time and date at job start Tue Mar 31 2020 12:41:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47353 * 2 1 4 4 O 1.42907 * 109.47337 * 119.99930 * 2 1 3 5 5 C 1.35923 * 117.00286 * 90.80202 * 4 2 1 6 6 C 1.38847 * 120.40464 * 174.40264 * 5 4 2 7 7 N 1.31880 * 120.99677 * 179.97438 * 6 5 4 8 8 C 1.31688 * 121.94517 * 359.97438 * 7 6 5 9 9 C 1.39526 * 120.68736 * 0.02562 * 8 7 6 10 10 C 1.47852 * 120.53022 * 180.02562 * 9 8 7 11 11 O 1.21552 * 120.00095 * 136.88014 * 10 9 8 12 12 N 1.34776 * 120.00116 * 316.87963 * 10 9 8 13 13 C 1.46506 * 119.99774 * 6.01764 * 12 10 9 14 14 C 1.50700 * 109.46835 * 97.38888 * 13 12 10 15 15 H 1.07997 * 120.00446 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99755 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99839 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99844 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.46951 * 89.99904 * 18 16 14 20 20 H 1.48504 * 109.47083 * 209.99471 * 18 16 14 21 21 H 1.48488 * 109.47415 * 329.99809 * 18 16 14 22 22 C 1.46496 * 120.00477 * 186.02244 * 12 10 9 23 23 C 1.52993 * 109.47469 * 94.70821 * 22 12 10 24 24 C 1.47196 * 109.47200 * 180.02562 * 23 22 12 25 25 N 9.54344 * 96.32675 * 223.47133 * 2 1 3 26 26 C 1.38844 * 120.40226 * 354.38076 * 5 4 2 27 27 H 1.09005 * 109.47074 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46615 * 299.99914 * 1 2 3 29 29 H 1.08993 * 109.47057 * 60.00639 * 1 2 3 30 30 H 1.09005 * 109.47175 * 239.99357 * 2 1 3 31 31 H 1.09000 * 109.47648 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46573 * 299.99661 * 3 2 1 33 33 H 1.08996 * 109.47594 * 59.99829 * 3 2 1 34 34 H 1.08000 * 119.50113 * 359.95588 * 6 5 4 35 35 H 1.07997 * 119.65600 * 179.97438 * 8 7 6 36 36 H 1.08994 * 109.47181 * 217.38945 * 13 12 10 37 37 H 1.09000 * 109.46999 * 337.39140 * 13 12 10 38 38 H 0.96999 * 119.99859 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47269 * 214.71607 * 22 12 10 40 40 H 1.09007 * 109.46732 * 334.71113 * 22 12 10 41 41 H 1.09002 * 109.47517 * 300.00634 * 23 22 12 42 42 H 1.09007 * 109.46905 * 60.00398 * 23 22 12 43 43 H 1.08001 * 120.88201 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2281 -2.0104 1.0604 6 6 2.7997 -2.7139 2.1122 7 7 3.0196 -4.0111 2.0217 8 6 2.7105 -4.6964 0.9404 9 6 2.1326 -4.0654 -0.1616 10 6 1.7865 -4.8383 -1.3736 11 8 0.7262 -4.6449 -1.9356 12 7 2.6466 -5.7574 -1.8552 13 6 3.8630 -6.0852 -1.1072 14 6 3.6305 -7.3306 -0.2913 15 1 2.6728 -7.8285 -0.3266 16 6 4.6409 -7.8352 0.4997 17 7 4.4382 -8.9224 1.2114 18 14 6.2977 -6.9745 0.5603 19 1 6.2902 -5.9623 1.6469 20 1 7.3652 -7.9733 0.8216 21 1 6.5549 -6.3036 -0.7392 22 6 2.3655 -6.4285 -3.1267 23 6 3.0786 -5.6908 -4.2615 24 6 2.7956 -6.3648 -5.5391 25 7 2.5817 -6.8837 -6.5258 26 6 1.8853 -2.6892 -0.1013 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5140 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6768 1.9563 0.8899 34 1 3.0686 -2.1908 3.0180 35 1 2.9072 -5.7578 0.9061 36 1 4.6834 -6.2553 -1.8043 37 1 4.1155 -5.2580 -0.4438 38 1 5.1490 -9.2771 1.7681 39 1 2.7225 -7.4574 -3.0812 40 1 1.2909 -6.4246 -3.3096 41 1 2.7216 -4.6619 -4.3070 42 1 4.1532 -5.6947 -4.0785 43 1 1.4393 -2.1691 -0.9362 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160928201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:11 Heat of formation + Delta-G solvation = -4.478318 kcal Electronic energy + Delta-G solvation = -26575.487417 eV Core-core repulsion = 22814.833159 eV Total energy + Delta-G solvation = -3760.654258 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.80224 -39.47044 -38.10760 -36.78899 -35.54435 -33.51461 -33.03158 -32.29357 -31.30366 -29.73481 -28.13064 -27.52689 -25.27010 -23.73767 -23.28784 -22.49000 -21.10837 -19.52359 -17.93569 -17.66089 -17.06106 -16.88047 -16.58221 -16.20993 -15.66440 -15.49447 -14.82960 -14.58312 -14.38435 -14.31449 -13.87412 -13.67890 -13.40283 -13.14457 -12.95948 -12.75250 -12.67719 -12.53239 -12.45517 -12.36107 -12.15415 -12.04459 -11.85398 -11.44942 -11.19881 -11.04446 -10.93153 -10.80851 -10.75335 -10.41845 -9.92380 -9.79298 -9.52546 -9.11742 -8.84974 -8.17470 -8.11910 -6.37097 -4.42766 1.01193 1.47008 2.71747 2.85463 3.01450 3.12504 3.14318 3.18232 3.24353 3.40602 4.05199 4.16212 4.19049 4.50849 4.63805 4.70080 4.75169 4.87529 4.91360 5.01507 5.12472 5.19541 5.20284 5.28652 5.33442 5.45925 5.48109 5.51396 5.55149 5.79864 5.82644 5.93016 5.95930 6.09939 6.14402 6.18780 6.26860 6.47770 6.87422 6.98590 7.24409 7.30335 7.60945 7.76621 8.19468 8.23801 8.49897 8.69737 9.19639 10.73695 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009343 B = 0.005132 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.051343 B = 5454.168268 C = 7617.748587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.072 3.928 3 C -0.148 4.148 4 O -0.305 6.305 5 C 0.058 3.942 6 C 0.087 3.913 7 N -0.450 5.450 8 C 0.100 3.900 9 C -0.142 4.142 10 C 0.567 3.433 11 O -0.553 6.553 12 N -0.581 5.581 13 C 0.194 3.806 14 C -0.558 4.558 15 H 0.085 0.915 16 C 0.088 3.912 17 N -0.875 5.875 18 Si 0.862 3.138 19 H -0.264 1.264 20 H -0.281 1.281 21 H -0.263 1.263 22 C 0.123 3.877 23 C -0.045 4.045 24 C 0.220 3.780 25 N -0.445 5.445 26 C -0.122 4.122 27 H 0.064 0.936 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.160 0.840 35 H 0.211 0.789 36 H 0.038 0.962 37 H 0.041 0.959 38 H 0.271 0.729 39 H 0.096 0.904 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 16.993 -2.177 17.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.016 3.984 3 C -0.206 4.206 4 O -0.219 6.219 5 C 0.011 3.989 6 C -0.071 4.071 7 N -0.158 5.158 8 C -0.057 4.057 9 C -0.147 4.147 10 C 0.355 3.645 11 O -0.433 6.433 12 N -0.310 5.310 13 C 0.074 3.926 14 C -0.595 4.595 15 H 0.103 0.897 16 C -0.118 4.118 17 N -0.510 5.510 18 Si 0.688 3.312 19 H -0.188 1.188 20 H -0.207 1.207 21 H -0.188 1.188 22 C -0.002 4.002 23 C -0.087 4.087 24 C -0.098 4.098 25 N -0.122 5.122 26 C -0.149 4.149 27 H 0.083 0.917 28 H 0.086 0.914 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.085 0.915 34 H 0.178 0.822 35 H 0.227 0.773 36 H 0.056 0.944 37 H 0.059 0.941 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.108 0.892 41 H 0.125 0.875 42 H 0.130 0.870 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -1.985 15.863 -2.943 16.255 hybrid contribution 0.634 0.912 -0.342 1.162 sum -1.351 16.774 -3.285 17.146 Atomic orbital electron populations 1.22330 0.94782 1.03399 1.02995 1.22482 0.94575 0.93629 0.87703 1.21871 1.02087 0.93627 1.02979 1.86128 1.81219 1.17240 1.37287 1.19959 0.99186 0.84094 0.95647 1.22488 0.96987 0.90220 0.97453 1.67997 1.15993 1.06182 1.25657 1.24768 0.90598 1.03941 0.86362 1.20833 1.02684 0.93954 0.97264 1.18052 0.83581 0.79617 0.83253 1.90724 1.23354 1.68444 1.60808 1.47742 1.23950 1.38187 1.21079 1.20247 0.82370 0.97474 0.92551 1.21275 1.01886 1.09647 1.26688 0.89681 1.24855 0.98332 0.94325 0.94324 1.69868 1.33851 1.20639 1.26615 0.87044 0.84082 0.80365 0.79752 1.18839 1.20665 1.18775 1.21203 1.01246 0.96737 0.80983 1.19745 1.04160 0.99659 0.85115 1.28962 0.92959 0.93465 0.94450 1.81160 1.09255 1.09510 1.12280 1.21644 1.01145 0.93961 0.98132 0.91654 0.91429 0.90992 0.90762 0.91666 0.90618 0.91451 0.82247 0.77291 0.94380 0.94150 0.91897 0.88521 0.89162 0.87503 0.86975 0.83992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 9.37 37.16 0.35 -1.24 16 2 C 0.07 0.70 2.82 -26.73 -0.08 0.63 16 3 C -0.15 -1.10 9.56 37.15 0.36 -0.74 16 4 O -0.31 -3.81 9.79 -19.50 -0.19 -4.00 16 5 C 0.06 0.84 6.67 -39.13 -0.26 0.58 16 6 C 0.09 1.33 11.13 -17.31 -0.19 1.14 16 7 N -0.45 -8.27 10.34 -12.80 -0.13 -8.40 16 8 C 0.10 1.90 8.57 -17.13 -0.15 1.76 16 9 C -0.14 -2.50 5.18 -104.84 -0.54 -3.04 16 10 C 0.57 10.33 7.32 -12.33 -0.09 10.24 16 11 O -0.55 -10.90 16.46 5.32 0.09 -10.81 16 12 N -0.58 -10.05 2.46 -176.17 -0.43 -10.48 16 13 C 0.19 3.73 3.74 -5.19 -0.02 3.71 16 14 C -0.56 -13.02 7.57 -34.44 -0.26 -13.28 16 15 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 16 C 0.09 2.19 5.47 -17.82 -0.10 2.09 16 17 N -0.87 -23.64 13.96 55.43 0.77 -22.86 16 18 Si 0.86 18.47 27.47 -169.99 -4.67 13.81 16 19 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 20 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.26 -5.22 6.54 56.52 0.37 -4.86 16 22 C 0.12 1.81 5.47 -4.05 -0.02 1.79 16 23 C -0.05 -0.52 6.02 -29.52 -0.18 -0.70 16 24 C 0.22 2.92 15.43 -20.79 -0.32 2.60 16 25 N -0.44 -7.03 18.53 42.12 0.78 -6.25 16 26 C -0.12 -1.83 8.32 -38.72 -0.32 -2.16 16 27 H 0.06 0.69 7.62 -51.93 -0.40 0.29 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.72 5.98 -51.93 -0.31 0.41 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.42 8.14 -51.92 -0.42 0.00 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.16 2.00 8.06 -52.49 -0.42 1.57 16 35 H 0.21 4.52 4.35 -52.49 -0.23 4.29 16 36 H 0.04 0.69 7.18 -51.93 -0.37 0.32 16 37 H 0.04 0.79 4.39 -51.93 -0.23 0.56 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.10 1.45 8.11 -51.93 -0.42 1.03 16 40 H 0.09 1.37 7.22 -51.92 -0.37 1.00 16 41 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.11 1.13 8.14 -51.92 -0.42 0.71 16 43 H 0.14 1.89 5.83 -52.49 -0.31 1.59 16 LS Contribution 364.50 15.07 5.49 5.49 Total: -1.00 -29.12 364.50 -5.73 -34.85 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -5.61 Total: 5.31 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: -1.83 Total: 3.36 kcal Atomic # 7 Polarization: -49.00 SS G_CDS: 0.99 Total: -48.01 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: -0.10 Total: -14.81 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -4.67 Total: 13.81 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.12 -5.73 -34.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160928201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.370 kcal (2) G-P(sol) polarization free energy of solvation -29.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds