Wall clock time and date at job start Tue Mar 31 2020 12:41:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47353 * 2 1 4 4 O 1.42907 * 109.47337 * 119.99930 * 2 1 3 5 5 C 1.35923 * 117.00286 * 90.80202 * 4 2 1 6 6 C 1.38847 * 120.40464 * 174.40264 * 5 4 2 7 7 N 1.31880 * 120.99677 * 179.97438 * 6 5 4 8 8 C 1.31688 * 121.94517 * 359.97438 * 7 6 5 9 9 C 1.39526 * 120.68736 * 0.02562 * 8 7 6 10 10 C 1.47852 * 120.53022 * 180.02562 * 9 8 7 11 11 O 1.21552 * 120.00095 * 136.88014 * 10 9 8 12 12 N 1.34776 * 120.00116 * 316.87963 * 10 9 8 13 13 C 1.46506 * 119.99774 * 6.01764 * 12 10 9 14 14 C 1.50700 * 109.46835 * 97.38888 * 13 12 10 15 15 H 1.07997 * 120.00446 * 0.02562 * 14 13 12 16 16 C 1.37881 * 119.99755 * 179.97438 * 14 13 12 17 17 N 1.31516 * 119.99839 * 180.02562 * 16 14 13 18 18 Si 1.86802 * 119.99844 * 0.02562 * 16 14 13 19 19 H 1.48506 * 109.46951 * 89.99904 * 18 16 14 20 20 H 1.48504 * 109.47083 * 209.99471 * 18 16 14 21 21 H 1.48488 * 109.47415 * 329.99809 * 18 16 14 22 22 C 1.46496 * 120.00477 * 186.02244 * 12 10 9 23 23 C 1.52993 * 109.47469 * 94.70821 * 22 12 10 24 24 C 1.47196 * 109.47200 * 180.02562 * 23 22 12 25 25 N 9.54344 * 96.32675 * 223.47133 * 2 1 3 26 26 C 1.38844 * 120.40226 * 354.38076 * 5 4 2 27 27 H 1.09005 * 109.47074 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46615 * 299.99914 * 1 2 3 29 29 H 1.08993 * 109.47057 * 60.00639 * 1 2 3 30 30 H 1.09005 * 109.47175 * 239.99357 * 2 1 3 31 31 H 1.09000 * 109.47648 * 180.02562 * 3 2 1 32 32 H 1.09007 * 109.46573 * 299.99661 * 3 2 1 33 33 H 1.08996 * 109.47594 * 59.99829 * 3 2 1 34 34 H 1.08000 * 119.50113 * 359.95588 * 6 5 4 35 35 H 1.07997 * 119.65600 * 179.97438 * 8 7 6 36 36 H 1.08994 * 109.47181 * 217.38945 * 13 12 10 37 37 H 1.09000 * 109.46999 * 337.39140 * 13 12 10 38 38 H 0.96999 * 119.99859 * 180.02562 * 17 16 14 39 39 H 1.09002 * 109.47269 * 214.71607 * 22 12 10 40 40 H 1.09007 * 109.46732 * 334.71113 * 22 12 10 41 41 H 1.09002 * 109.47517 * 300.00634 * 23 22 12 42 42 H 1.09007 * 109.46905 * 60.00398 * 23 22 12 43 43 H 1.08001 * 120.88201 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2281 -2.0104 1.0604 6 6 2.7997 -2.7139 2.1122 7 7 3.0196 -4.0111 2.0217 8 6 2.7105 -4.6964 0.9404 9 6 2.1326 -4.0654 -0.1616 10 6 1.7865 -4.8383 -1.3736 11 8 0.7262 -4.6449 -1.9356 12 7 2.6466 -5.7574 -1.8552 13 6 3.8630 -6.0852 -1.1072 14 6 3.6305 -7.3306 -0.2913 15 1 2.6728 -7.8285 -0.3266 16 6 4.6409 -7.8352 0.4997 17 7 4.4382 -8.9224 1.2114 18 14 6.2977 -6.9745 0.5603 19 1 6.2902 -5.9623 1.6469 20 1 7.3652 -7.9733 0.8216 21 1 6.5549 -6.3036 -0.7392 22 6 2.3655 -6.4285 -3.1267 23 6 3.0786 -5.6908 -4.2615 24 6 2.7956 -6.3648 -5.5391 25 7 2.5817 -6.8837 -6.5258 26 6 1.8853 -2.6892 -0.1013 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5137 -0.8900 30 1 1.8934 -0.5140 -0.8900 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9562 -0.8901 33 1 1.6768 1.9563 0.8899 34 1 3.0686 -2.1908 3.0180 35 1 2.9072 -5.7578 0.9061 36 1 4.6834 -6.2553 -1.8043 37 1 4.1155 -5.2580 -0.4438 38 1 5.1490 -9.2771 1.7681 39 1 2.7225 -7.4574 -3.0812 40 1 1.2909 -6.4246 -3.3096 41 1 2.7216 -4.6619 -4.3070 42 1 4.1532 -5.6947 -4.0785 43 1 1.4393 -2.1691 -0.9362 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160928201.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:41:10 Heat of formation + Delta-G solvation = -22.053822 kcal Electronic energy + Delta-G solvation = -26576.249548 eV Core-core repulsion = 22814.833159 eV Total energy + Delta-G solvation = -3761.416389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.05284 -40.71917 -39.27594 -37.97814 -36.97672 -34.77401 -34.28215 -33.65968 -32.56435 -30.92852 -29.78874 -28.15649 -26.48822 -24.90034 -24.80747 -23.92693 -22.01833 -20.79477 -19.24201 -19.05468 -18.51277 -18.14329 -17.81504 -17.45365 -17.04525 -16.43936 -16.17410 -15.87552 -15.73572 -15.32624 -15.07498 -14.89221 -14.69626 -14.42265 -14.26144 -14.12271 -13.76004 -13.62508 -13.47595 -13.26247 -13.25453 -13.09592 -12.95132 -12.74449 -12.63832 -12.41304 -12.07262 -11.93262 -11.83448 -11.69681 -11.64771 -11.33059 -10.81382 -10.77774 -10.42153 -9.59246 -9.38171 -8.27815 -6.35207 -0.27358 0.20889 1.43820 1.48728 1.52278 1.55177 1.74282 1.79686 2.03672 2.15388 2.37803 2.73825 3.05610 3.12002 3.36678 3.59986 3.74099 3.82107 3.88811 4.00021 4.07708 4.11965 4.16464 4.18558 4.47854 4.54362 4.66554 4.71798 4.78596 4.80261 4.87505 4.89268 4.90056 4.93715 5.04405 5.05974 5.24511 5.31191 5.42826 5.49695 5.59380 6.13398 6.24392 6.47502 6.55607 6.73396 6.93680 7.08178 7.30789 8.87017 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009343 B = 0.005132 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2996.051343 B = 5454.168268 C = 7617.748587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.062 3.938 3 C -0.144 4.144 4 O -0.305 6.305 5 C 0.076 3.924 6 C 0.086 3.914 7 N -0.474 5.474 8 C 0.079 3.921 9 C -0.151 4.151 10 C 0.567 3.433 11 O -0.571 6.571 12 N -0.579 5.579 13 C 0.203 3.797 14 C -0.542 4.542 15 H 0.041 0.959 16 C 0.036 3.964 17 N -0.931 5.931 18 Si 0.918 3.082 19 H -0.268 1.268 20 H -0.288 1.288 21 H -0.227 1.227 22 C 0.119 3.881 23 C -0.030 4.030 24 C 0.244 3.756 25 N -0.490 5.490 26 C -0.116 4.116 27 H 0.045 0.955 28 H 0.070 0.930 29 H 0.093 0.907 30 H 0.078 0.922 31 H 0.064 0.936 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.188 0.812 35 H 0.180 0.820 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.269 0.731 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.128 0.872 42 H 0.138 0.862 43 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.699 20.644 -3.188 20.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.006 3.994 3 C -0.201 4.201 4 O -0.219 6.219 5 C 0.028 3.972 6 C -0.073 4.073 7 N -0.183 5.183 8 C -0.077 4.077 9 C -0.156 4.156 10 C 0.356 3.644 11 O -0.452 6.452 12 N -0.307 5.307 13 C 0.081 3.919 14 C -0.580 4.580 15 H 0.059 0.941 16 C -0.165 4.165 17 N -0.569 5.569 18 Si 0.741 3.259 19 H -0.193 1.193 20 H -0.214 1.214 21 H -0.150 1.150 22 C -0.005 4.005 23 C -0.071 4.071 24 C -0.073 4.073 25 N -0.168 5.168 26 C -0.143 4.143 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.083 0.917 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.205 0.795 35 H 0.197 0.803 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.107 0.893 40 H 0.100 0.900 41 H 0.146 0.854 42 H 0.155 0.845 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.074 19.530 -3.999 19.964 hybrid contribution 0.181 -0.101 0.040 0.211 sum -0.892 19.429 -3.959 19.849 Atomic orbital electron populations 1.22335 0.94198 1.02512 1.04301 1.22848 0.95125 0.94716 0.86713 1.21892 1.02079 0.91933 1.04232 1.86157 1.80833 1.15917 1.38949 1.19902 0.97492 0.85001 0.94777 1.22884 0.96382 0.89305 0.98714 1.67908 1.16898 1.07813 1.25638 1.24179 0.92930 1.02866 0.87701 1.20753 1.03359 0.94990 0.96489 1.18185 0.83278 0.79696 0.83278 1.90710 1.23852 1.69200 1.61480 1.47698 1.23343 1.38018 1.21646 1.20070 0.83626 0.95452 0.92753 1.21386 0.99754 1.10352 1.26517 0.94051 1.25606 1.02041 0.94793 0.94047 1.70019 1.35085 1.23134 1.28678 0.86144 0.79449 0.79102 0.81206 1.19312 1.21411 1.14969 1.21281 1.01340 0.96792 0.81119 1.19715 1.05208 0.99712 0.82491 1.29162 0.91568 0.92342 0.94210 1.81192 1.10814 1.10891 1.13858 1.21805 1.00532 0.92913 0.99018 0.93568 0.91117 0.88815 0.90390 0.91702 0.88393 0.91208 0.79543 0.80341 0.91981 0.93444 0.92201 0.89289 0.89957 0.85422 0.84470 0.82137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.65 9.37 71.98 0.67 -1.97 16 2 C 0.06 0.99 2.82 30.59 0.09 1.08 16 3 C -0.14 -1.60 9.56 71.98 0.69 -0.91 16 4 O -0.31 -6.70 9.79 -92.68 -0.91 -7.61 16 5 C 0.08 2.01 6.67 22.56 0.15 2.16 16 6 C 0.09 2.47 11.13 84.83 0.94 3.42 16 7 N -0.47 -17.22 10.34 -194.40 -2.01 -19.23 16 8 C 0.08 3.05 8.57 85.03 0.73 3.78 16 9 C -0.15 -5.17 5.18 -20.01 -0.10 -5.28 16 10 C 0.57 20.23 7.32 86.79 0.64 20.87 16 11 O -0.57 -22.03 16.46 -3.88 -0.06 -22.09 16 12 N -0.58 -19.51 2.46 -829.57 -2.04 -21.55 16 13 C 0.20 7.53 3.74 85.63 0.32 7.85 16 14 C -0.54 -25.98 7.57 25.60 0.19 -25.79 16 15 H 0.04 2.30 8.06 -2.91 -0.02 2.28 16 16 C 0.04 1.84 5.47 84.66 0.46 2.30 16 17 N -0.93 -52.59 13.96 21.45 0.30 -52.29 16 18 Si 0.92 37.67 27.47 68.60 1.88 39.55 16 19 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 20 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 21 H -0.23 -7.93 6.54 99.48 0.65 -7.28 16 22 C 0.12 3.37 5.47 86.38 0.47 3.84 16 23 C -0.03 -0.61 6.02 28.79 0.17 -0.44 16 24 C 0.24 6.05 15.43 89.45 1.38 7.43 16 25 N -0.49 -15.00 18.53 19.99 0.37 -14.63 16 26 C -0.12 -3.25 8.32 22.83 0.19 -3.06 16 27 H 0.05 0.88 7.62 -2.38 -0.02 0.86 16 28 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 1.22 5.98 -2.38 -0.01 1.21 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.19 4.19 8.06 -2.91 -0.02 4.17 16 35 H 0.18 8.02 4.35 -2.91 -0.01 8.01 16 36 H 0.06 2.06 7.18 -2.39 -0.02 2.04 16 37 H 0.05 1.78 4.39 -2.39 -0.01 1.77 16 38 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 39 H 0.09 2.65 8.11 -2.39 -0.02 2.63 16 40 H 0.08 2.47 7.22 -2.38 -0.02 2.46 16 41 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.14 2.18 8.14 -2.38 -0.02 2.16 16 43 H 0.16 3.85 5.83 -2.91 -0.02 3.83 16 Total: -1.00 -65.92 364.50 5.51 -60.41 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.98 Total: 22.15 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 7.00 Total: 15.29 kcal Atomic # 7 Polarization: -104.31 SS G_CDS: -3.38 Total: -107.70 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.97 Total: -29.70 kcal Atomic # 14 Polarization: 37.67 SS G_CDS: 1.88 Total: 39.55 kcal Total: -65.92 5.51 -60.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160928201.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.356 kcal (2) G-P(sol) polarization free energy of solvation -65.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds