Wall clock time and date at job start Tue Mar 31 2020 12:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46568 * 2 1 4 4 O 1.42896 * 109.47326 * 119.99438 * 2 1 3 5 5 C 1.35666 * 117.00191 * 154.89371 * 4 2 1 6 6 C 1.39287 * 119.61764 * 174.91189 * 5 4 2 7 7 C 1.38329 * 119.30363 * 180.02562 * 6 5 4 8 8 C 1.38783 * 118.56180 * 0.02562 * 7 6 5 9 9 C 1.39128 * 119.18480 * 359.97438 * 8 7 6 10 10 C 1.48157 * 119.68734 * 179.97438 * 9 8 7 11 11 O 1.21513 * 119.99803 * 152.27939 * 10 9 8 12 12 N 1.34774 * 119.99841 * 332.27988 * 10 9 8 13 13 C 1.46504 * 119.99559 * 184.89192 * 12 10 9 14 14 C 1.50706 * 109.47056 * 90.00180 * 13 12 10 15 15 H 1.08004 * 119.99411 * 0.02562 * 14 13 12 16 16 C 1.37866 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00449 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99950 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46806 * 90.00346 * 18 16 14 20 20 H 1.48493 * 109.47042 * 210.00119 * 18 16 14 21 21 H 1.48496 * 109.46901 * 330.00388 * 18 16 14 22 22 C 1.46496 * 120.00409 * 4.89710 * 12 10 9 23 23 C 1.53002 * 109.47434 * 97.73551 * 22 12 10 24 24 C 1.47202 * 109.46983 * 185.41437 * 23 22 12 25 25 N 9.05363 * 152.25151 * 148.37672 * 2 1 3 26 26 N 1.31897 * 119.61377 * 354.64828 * 5 4 2 27 27 H 1.09001 * 109.46873 * 299.99873 * 1 2 3 28 28 H 1.08998 * 109.47093 * 60.00289 * 1 2 3 29 29 H 1.08999 * 109.46646 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47267 * 239.99861 * 2 1 3 31 31 H 1.08996 * 109.46884 * 304.98308 * 3 2 1 32 32 H 1.08998 * 109.47469 * 64.99042 * 3 2 1 33 33 H 1.09002 * 109.46777 * 184.99053 * 3 2 1 34 34 H 1.07996 * 120.35144 * 359.97438 * 6 5 4 35 35 H 1.08001 * 120.72273 * 180.02562 * 7 6 5 36 36 H 1.08002 * 120.40864 * 179.97438 * 8 7 6 37 37 H 1.09003 * 109.47045 * 209.99874 * 13 12 10 38 38 H 1.09000 * 109.47246 * 330.00328 * 13 12 10 39 39 H 0.96998 * 120.00424 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.46992 * 217.73450 * 22 12 10 41 41 H 1.09002 * 109.47190 * 337.73084 * 22 12 10 42 42 H 1.08998 * 109.46600 * 305.40916 * 23 22 12 43 43 H 1.08993 * 109.46984 * 65.41296 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 3.2437 -1.2256 1.0973 6 6 3.8052 -1.8018 2.2343 7 6 5.0674 -2.3624 2.1563 8 6 5.7338 -2.3298 0.9393 9 6 5.1150 -1.7384 -0.1574 10 6 5.8165 -1.6969 -1.4617 11 8 5.1773 -1.6699 -2.4948 12 7 7.1636 -1.6892 -1.5024 13 6 7.8569 -1.5402 -2.7844 14 6 8.0914 -0.0775 -3.0616 15 1 7.7578 0.6665 -2.3534 16 6 8.7327 0.3106 -4.2187 17 7 9.1394 -0.5955 -5.0808 18 14 9.0228 2.1237 -4.5627 19 1 10.3328 2.5318 -3.9947 20 1 9.0256 2.3549 -6.0295 21 1 7.9406 2.9254 -3.9372 22 6 7.9347 -1.8299 -0.2647 23 6 8.3715 -3.2868 -0.0987 24 6 9.0331 -3.4551 1.2055 25 7 9.5425 -3.5894 2.2102 26 7 3.8988 -1.2151 -0.0474 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6055 1.9814 -0.8420 32 1 1.7514 1.9300 0.9313 33 1 3.1263 1.4439 -0.0894 34 1 3.2613 -1.8101 3.1672 35 1 5.5244 -2.8156 3.0235 36 1 6.7207 -2.7583 0.8448 37 1 8.8140 -2.0600 -2.7424 38 1 7.2459 -1.9673 -3.5796 39 1 9.5909 -0.3224 -5.8947 40 1 8.8155 -1.1895 -0.3106 41 1 7.3164 -1.5369 0.5839 42 1 7.4974 -3.9360 -0.1491 43 1 9.0667 -3.5507 -0.8955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179046063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:59 Heat of formation + Delta-G solvation = 24.340045 kcal Electronic energy + Delta-G solvation = -26527.308986 eV Core-core repulsion = 22767.904386 eV Total energy + Delta-G solvation = -3759.404600 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.04659 -39.45705 -37.79091 -37.13378 -35.52099 -33.44033 -32.94933 -32.50813 -31.17267 -30.34888 -27.45331 -27.32514 -24.94836 -24.25846 -23.39785 -22.66213 -21.14664 -19.64435 -18.25832 -17.67849 -17.08539 -16.78348 -16.47287 -15.98250 -15.77291 -15.29659 -14.70070 -14.62622 -14.42673 -14.25266 -13.91739 -13.71011 -13.44286 -13.16558 -12.88674 -12.83746 -12.56796 -12.45562 -12.41754 -12.20327 -11.94398 -11.88363 -11.56541 -11.30768 -11.10898 -10.98890 -10.92284 -10.72165 -10.57724 -10.24949 -9.96742 -9.88200 -9.73667 -9.05064 -8.51610 -8.47454 -7.95279 -6.12622 -4.17506 0.77445 1.19134 2.64017 2.71948 2.90147 3.10530 3.26840 3.34210 3.34700 3.40981 3.82872 4.04696 4.36472 4.49075 4.64177 4.78916 4.80433 4.90862 4.92552 4.97043 5.01180 5.05595 5.21745 5.23040 5.33766 5.43821 5.47083 5.62454 5.69841 5.72735 5.74470 5.82238 5.97023 6.02950 6.05346 6.16804 6.29367 6.82494 7.20516 7.25838 7.33960 7.47268 7.75828 7.84209 8.10415 8.13130 8.72252 8.89246 9.48279 10.95493 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009308 B = 0.004813 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.401269 B = 5816.023085 C = 8139.287967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.079 3.921 3 C -0.170 4.170 4 O -0.303 6.303 5 C 0.324 3.676 6 C -0.181 4.181 7 C -0.046 4.046 8 C -0.219 4.219 9 C 0.145 3.855 10 C 0.557 3.443 11 O -0.503 6.503 12 N -0.583 5.583 13 C 0.245 3.755 14 C -0.532 4.532 15 H 0.059 0.941 16 C 0.065 3.935 17 N -0.892 5.892 18 Si 0.897 3.103 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.274 1.274 22 C 0.082 3.918 23 C -0.060 4.060 24 C 0.213 3.787 25 N -0.437 5.437 26 N -0.494 5.494 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.142 0.858 35 H 0.144 0.856 36 H 0.168 0.832 37 H 0.040 0.960 38 H 0.051 0.949 39 H 0.264 0.736 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.114 0.886 43 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.079 -3.269 13.626 17.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.023 3.977 3 C -0.228 4.228 4 O -0.211 6.211 5 C 0.143 3.857 6 C -0.202 4.202 7 C -0.071 4.071 8 C -0.240 4.240 9 C 0.005 3.995 10 C 0.341 3.659 11 O -0.376 6.376 12 N -0.315 5.315 13 C 0.127 3.873 14 C -0.570 4.570 15 H 0.077 0.923 16 C -0.138 4.138 17 N -0.531 5.531 18 Si 0.724 3.276 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.044 4.044 23 C -0.101 4.101 24 C -0.105 4.105 25 N -0.114 5.114 26 N -0.218 5.218 27 H 0.081 0.919 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.160 0.840 35 H 0.162 0.838 36 H 0.184 0.816 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.121 0.879 42 H 0.132 0.868 43 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.163 -3.068 13.794 17.406 hybrid contribution 0.490 0.803 -0.091 0.945 sum -9.674 -2.264 13.703 16.925 Atomic orbital electron populations 1.21870 0.92811 1.02880 1.02849 1.22394 0.94348 0.92875 0.88123 1.22234 1.02626 0.95554 1.02348 1.86267 1.27279 1.67439 1.40096 1.19781 0.85881 0.90809 0.89269 1.21223 0.97002 1.03608 0.98317 1.21408 0.92818 0.94984 0.97919 1.23179 1.03101 1.04203 0.93476 1.20991 0.89673 0.94062 0.94728 1.17767 0.82458 0.78641 0.86994 1.90777 1.65382 1.47531 1.33931 1.48042 1.04062 1.70065 1.09359 1.19454 0.92073 0.97484 0.78293 1.21403 1.37979 0.92039 1.05621 0.92280 1.24890 0.95377 0.97853 0.95663 1.69909 1.39308 1.33147 1.10720 0.86512 0.78486 0.84995 0.77559 1.20592 1.21051 1.19872 1.22204 0.99172 0.93386 0.89598 1.19987 1.01388 1.00680 0.88057 1.28957 0.93606 0.93365 0.94566 1.81158 1.09505 1.08448 1.12273 1.67107 1.08930 1.20615 1.25151 0.91852 0.90398 0.91868 0.88753 0.90953 0.92229 0.91745 0.84009 0.83788 0.81560 0.94189 0.93097 0.92589 0.88506 0.87901 0.86849 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.56 37.16 0.36 -1.03 16 2 C 0.08 0.99 3.09 -26.73 -0.08 0.91 16 3 C -0.17 -2.06 9.46 37.16 0.35 -1.71 16 4 O -0.30 -4.11 9.78 -18.70 -0.18 -4.29 16 5 C 0.32 4.65 7.38 -17.13 -0.13 4.52 16 6 C -0.18 -2.04 10.05 -39.16 -0.39 -2.44 16 7 C -0.05 -0.47 10.16 -39.35 -0.40 -0.87 16 8 C -0.22 -2.70 7.47 -39.05 -0.29 -3.00 16 9 C 0.14 2.39 6.46 -83.02 -0.54 1.85 16 10 C 0.56 11.14 7.57 -12.19 -0.09 11.05 16 11 O -0.50 -12.31 16.55 5.35 0.09 -12.23 16 12 N -0.58 -10.81 2.46 -176.05 -0.43 -11.25 16 13 C 0.25 5.68 5.21 -5.19 -0.03 5.66 16 14 C -0.53 -14.00 9.39 -34.44 -0.32 -14.33 16 15 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 16 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 17 N -0.89 -24.98 13.29 55.43 0.74 -24.25 16 18 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 19 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 C 0.08 1.10 4.83 -4.04 -0.02 1.08 16 23 C -0.06 -0.61 5.07 -29.52 -0.15 -0.76 16 24 C 0.21 2.38 14.91 -20.81 -0.31 2.07 16 25 N -0.44 -5.89 18.53 42.10 0.78 -5.11 16 26 N -0.49 -8.39 8.52 -9.87 -0.08 -8.48 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 1.41 7.08 -51.93 -0.37 1.04 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 35 H 0.14 1.03 8.06 -52.49 -0.42 0.60 16 36 H 0.17 1.76 1.97 -52.49 -0.10 1.66 16 37 H 0.04 0.89 8.02 -51.93 -0.42 0.48 16 38 H 0.05 1.35 7.36 -51.93 -0.38 0.97 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.10 1.33 8.13 -51.93 -0.42 0.91 16 41 H 0.10 1.25 4.10 -52.12 -0.21 1.04 16 42 H 0.11 0.98 7.20 -51.93 -0.37 0.60 16 43 H 0.13 1.22 8.09 -51.93 -0.42 0.80 16 LS Contribution 369.10 15.07 5.56 5.56 Total: -1.00 -33.03 369.10 -6.32 -39.35 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.63 Total: 0.03 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -2.14 Total: 4.65 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 1.00 Total: -49.08 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: -0.09 Total: -16.51 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.03 -6.32 -39.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179046063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.695 kcal (2) G-P(sol) polarization free energy of solvation -33.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds