Wall clock time and date at job start Tue Mar 31 2020 12:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.46568 * 2 1 4 4 O 1.42896 * 109.47326 * 119.99438 * 2 1 3 5 5 C 1.35666 * 117.00191 * 154.89371 * 4 2 1 6 6 C 1.39287 * 119.61764 * 174.91189 * 5 4 2 7 7 C 1.38329 * 119.30363 * 180.02562 * 6 5 4 8 8 C 1.38783 * 118.56180 * 0.02562 * 7 6 5 9 9 C 1.39128 * 119.18480 * 359.97438 * 8 7 6 10 10 C 1.48157 * 119.68734 * 179.97438 * 9 8 7 11 11 O 1.21513 * 119.99803 * 152.27939 * 10 9 8 12 12 N 1.34774 * 119.99841 * 332.27988 * 10 9 8 13 13 C 1.46504 * 119.99559 * 184.89192 * 12 10 9 14 14 C 1.50706 * 109.47056 * 90.00180 * 13 12 10 15 15 H 1.08004 * 119.99411 * 0.02562 * 14 13 12 16 16 C 1.37866 * 119.99865 * 179.97438 * 14 13 12 17 17 N 1.31511 * 120.00449 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99950 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46806 * 90.00346 * 18 16 14 20 20 H 1.48493 * 109.47042 * 210.00119 * 18 16 14 21 21 H 1.48496 * 109.46901 * 330.00388 * 18 16 14 22 22 C 1.46496 * 120.00409 * 4.89710 * 12 10 9 23 23 C 1.53002 * 109.47434 * 97.73551 * 22 12 10 24 24 C 1.47202 * 109.46983 * 185.41437 * 23 22 12 25 25 N 9.05363 * 152.25151 * 148.37672 * 2 1 3 26 26 N 1.31897 * 119.61377 * 354.64828 * 5 4 2 27 27 H 1.09001 * 109.46873 * 299.99873 * 1 2 3 28 28 H 1.08998 * 109.47093 * 60.00289 * 1 2 3 29 29 H 1.08999 * 109.46646 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47267 * 239.99861 * 2 1 3 31 31 H 1.08996 * 109.46884 * 304.98308 * 3 2 1 32 32 H 1.08998 * 109.47469 * 64.99042 * 3 2 1 33 33 H 1.09002 * 109.46777 * 184.99053 * 3 2 1 34 34 H 1.07996 * 120.35144 * 359.97438 * 6 5 4 35 35 H 1.08001 * 120.72273 * 180.02562 * 7 6 5 36 36 H 1.08002 * 120.40864 * 179.97438 * 8 7 6 37 37 H 1.09003 * 109.47045 * 209.99874 * 13 12 10 38 38 H 1.09000 * 109.47246 * 330.00328 * 13 12 10 39 39 H 0.96998 * 120.00424 * 180.02562 * 17 16 14 40 40 H 1.08996 * 109.46992 * 217.73450 * 22 12 10 41 41 H 1.09002 * 109.47190 * 337.73084 * 22 12 10 42 42 H 1.08998 * 109.46600 * 305.40916 * 23 22 12 43 43 H 1.08993 * 109.46984 * 65.41296 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6735 1.1668 5 6 3.2437 -1.2256 1.0973 6 6 3.8052 -1.8018 2.2343 7 6 5.0674 -2.3624 2.1563 8 6 5.7338 -2.3298 0.9393 9 6 5.1150 -1.7384 -0.1574 10 6 5.8165 -1.6969 -1.4617 11 8 5.1773 -1.6699 -2.4948 12 7 7.1636 -1.6892 -1.5024 13 6 7.8569 -1.5402 -2.7844 14 6 8.0914 -0.0775 -3.0616 15 1 7.7578 0.6665 -2.3534 16 6 8.7327 0.3106 -4.2187 17 7 9.1394 -0.5955 -5.0808 18 14 9.0228 2.1237 -4.5627 19 1 10.3328 2.5318 -3.9947 20 1 9.0256 2.3549 -6.0295 21 1 7.9406 2.9254 -3.9372 22 6 7.9347 -1.8299 -0.2647 23 6 8.3715 -3.2868 -0.0987 24 6 9.0331 -3.4551 1.2055 25 7 9.5425 -3.5894 2.2102 26 7 3.8988 -1.2151 -0.0474 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.6055 1.9814 -0.8420 32 1 1.7514 1.9300 0.9313 33 1 3.1263 1.4439 -0.0894 34 1 3.2613 -1.8101 3.1672 35 1 5.5244 -2.8156 3.0235 36 1 6.7207 -2.7583 0.8448 37 1 8.8140 -2.0600 -2.7424 38 1 7.2459 -1.9673 -3.5796 39 1 9.5909 -0.3224 -5.8947 40 1 8.8155 -1.1895 -0.3106 41 1 7.3164 -1.5369 0.5839 42 1 7.4974 -3.9360 -0.1491 43 1 9.0667 -3.5507 -0.8955 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179046063.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:59 Heat of formation + Delta-G solvation = 2.308402 kcal Electronic energy + Delta-G solvation = -26528.264350 eV Core-core repulsion = 22767.904386 eV Total energy + Delta-G solvation = -3760.359964 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 317.153 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.19014 -40.71227 -38.95211 -38.27401 -36.87232 -35.03712 -34.23509 -33.57517 -32.55003 -31.46564 -29.19912 -28.20681 -26.27263 -25.55541 -24.50907 -24.17682 -22.13756 -20.97465 -19.43677 -18.83473 -18.37720 -18.11294 -17.94696 -17.21352 -16.93529 -16.80602 -16.09368 -15.95501 -15.55635 -15.41373 -15.09595 -14.85757 -14.49338 -14.33142 -14.27378 -13.89631 -13.85810 -13.62932 -13.31885 -13.28299 -13.21738 -13.04414 -12.91172 -12.84176 -12.59175 -12.36752 -12.20976 -12.10935 -11.91717 -11.72624 -11.65273 -11.19405 -10.94464 -10.58737 -10.39330 -9.61280 -9.52872 -8.19572 -6.31468 -0.32186 0.22851 1.38968 1.41743 1.50276 1.64636 1.66479 1.81595 1.98100 2.11647 2.41558 2.74555 2.92288 3.12708 3.33249 3.58456 3.80226 3.87822 3.97229 3.97406 3.99305 4.01049 4.15887 4.25365 4.40804 4.46899 4.65023 4.74080 4.77803 4.79240 4.83739 4.94564 4.97147 5.03782 5.09595 5.16134 5.22744 5.30609 5.40529 5.53723 5.81628 6.09765 6.16701 6.47281 6.57135 6.75685 6.78995 7.22104 7.40464 8.87395 Molecular weight = 317.15amu Principal moments of inertia in cm(-1) A = 0.009308 B = 0.004813 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3007.401269 B = 5816.023085 C = 8139.287967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.075 3.925 3 C -0.165 4.165 4 O -0.304 6.304 5 C 0.302 3.698 6 C -0.162 4.162 7 C -0.032 4.032 8 C -0.200 4.200 9 C 0.112 3.888 10 C 0.552 3.448 11 O -0.567 6.567 12 N -0.580 5.580 13 C 0.259 3.741 14 C -0.545 4.545 15 H 0.049 0.951 16 C 0.017 3.983 17 N -0.921 5.921 18 Si 0.956 3.044 19 H -0.264 1.264 20 H -0.283 1.283 21 H -0.279 1.279 22 C 0.077 3.923 23 C -0.049 4.049 24 C 0.241 3.759 25 N -0.469 5.469 26 N -0.531 5.531 27 H 0.077 0.923 28 H 0.090 0.910 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.032 0.968 34 H 0.177 0.823 35 H 0.192 0.808 36 H 0.184 0.816 37 H 0.050 0.950 38 H 0.009 0.991 39 H 0.267 0.733 40 H 0.095 0.905 41 H 0.121 0.879 42 H 0.136 0.864 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.114 -3.406 16.783 19.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.019 3.981 3 C -0.222 4.222 4 O -0.212 6.212 5 C 0.121 3.879 6 C -0.183 4.183 7 C -0.057 4.057 8 C -0.221 4.221 9 C -0.025 4.025 10 C 0.338 3.662 11 O -0.445 6.445 12 N -0.311 5.311 13 C 0.139 3.861 14 C -0.583 4.583 15 H 0.067 0.933 16 C -0.183 4.183 17 N -0.561 5.561 18 Si 0.781 3.219 19 H -0.189 1.189 20 H -0.208 1.208 21 H -0.204 1.204 22 C -0.046 4.046 23 C -0.090 4.090 24 C -0.077 4.077 25 N -0.146 5.146 26 N -0.256 5.256 27 H 0.096 0.904 28 H 0.109 0.891 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.051 0.949 34 H 0.194 0.806 35 H 0.209 0.791 36 H 0.201 0.799 37 H 0.068 0.932 38 H 0.027 0.973 39 H 0.076 0.924 40 H 0.113 0.887 41 H 0.138 0.862 42 H 0.154 0.846 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.160 -3.216 17.001 20.065 hybrid contribution 0.455 0.833 -1.017 1.391 sum -9.706 -2.383 15.984 18.851 Atomic orbital electron populations 1.21853 0.90117 1.03443 1.04213 1.22455 0.96349 0.92474 0.86851 1.22193 1.00535 0.95788 1.03710 1.86262 1.27163 1.67646 1.40161 1.20213 0.86200 0.91889 0.89617 1.21713 0.97223 1.01047 0.98284 1.21932 0.92050 0.93564 0.98172 1.23296 1.03427 1.02435 0.92909 1.20471 0.90322 0.97668 0.94036 1.18428 0.82606 0.77149 0.87971 1.90723 1.66727 1.50571 1.36513 1.47879 1.04116 1.69428 1.09631 1.18971 0.91794 0.95696 0.79644 1.21691 1.37610 0.93408 1.05635 0.93254 1.25644 0.95304 1.01757 0.95559 1.70001 1.40048 1.34873 1.11133 0.85592 0.78708 0.80232 0.77343 1.18883 1.20809 1.20422 1.22462 0.98759 0.95731 0.87679 1.19874 1.02463 0.98623 0.88005 1.28763 0.92627 0.92333 0.93940 1.81208 1.10608 1.09479 1.13317 1.66887 1.09618 1.21848 1.27270 0.90365 0.89099 0.91722 0.92058 0.89856 0.90535 0.94875 0.80572 0.79102 0.79917 0.93160 0.97294 0.92412 0.88699 0.86163 0.84603 0.84644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.56 71.98 0.69 -1.80 16 2 C 0.07 1.92 3.09 30.60 0.09 2.02 16 3 C -0.16 -4.05 9.46 71.98 0.68 -3.37 16 4 O -0.30 -8.04 9.78 -89.83 -0.88 -8.91 16 5 C 0.30 8.42 7.38 84.94 0.63 9.05 16 6 C -0.16 -3.09 10.05 22.54 0.23 -2.86 16 7 C -0.03 -0.52 10.16 22.42 0.23 -0.29 16 8 C -0.20 -4.44 7.47 22.61 0.17 -4.27 16 9 C 0.11 3.75 6.46 41.84 0.27 4.02 16 10 C 0.55 23.14 7.57 86.88 0.66 23.79 16 11 O -0.57 -30.01 16.55 -3.76 -0.06 -30.07 16 12 N -0.58 -22.05 2.46 -829.21 -2.04 -24.09 16 13 C 0.26 12.51 5.21 85.63 0.45 12.96 16 14 C -0.54 -29.60 9.39 25.60 0.24 -29.36 16 15 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 16 C 0.02 0.94 5.46 84.65 0.46 1.41 16 17 N -0.92 -52.69 13.29 21.44 0.28 -52.40 16 18 Si 0.96 43.68 29.54 68.60 2.03 45.70 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 C 0.08 1.97 4.83 86.38 0.42 2.39 16 23 C -0.05 -0.88 5.07 28.79 0.15 -0.73 16 24 C 0.24 4.65 14.91 89.46 1.33 5.99 16 25 N -0.47 -11.35 18.53 19.99 0.37 -10.98 16 26 N -0.53 -18.58 8.52 -298.20 -2.54 -21.12 16 27 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.06 1.97 7.08 -2.39 -0.02 1.96 16 31 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.18 2.16 8.06 -2.91 -0.02 2.13 16 35 H 0.19 1.40 8.06 -2.91 -0.02 1.38 16 36 H 0.18 3.29 1.97 -2.91 -0.01 3.28 16 37 H 0.05 2.30 8.02 -2.39 -0.02 2.28 16 38 H 0.01 0.51 7.36 -2.39 -0.02 0.49 16 39 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 40 H 0.09 2.50 8.13 -2.39 -0.02 2.48 16 41 H 0.12 2.67 4.10 -2.57 -0.01 2.66 16 42 H 0.14 1.94 7.20 -2.39 -0.02 1.92 16 43 H 0.14 2.33 8.09 -2.39 -0.02 2.31 16 Total: -1.00 -77.45 369.10 4.89 -72.56 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.04 Total: 10.38 kcal Atomic # 6 Polarization: 12.25 SS G_CDS: 6.69 Total: 18.94 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -3.93 Total: -108.60 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.94 Total: -38.98 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -77.45 4.89 -72.56 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179046063.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.869 kcal (2) G-P(sol) polarization free energy of solvation -77.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds